Experiment setATCH162 for Dickeya dadantii 3937

Compare to:

Upstate

Group: plant
Media: Potato tuber + cv.Upstate
Culturing: Dda3937, Potato tuber
By: Tyler Helmann on 11/16/20

Specific Phenotypes

For 2 genes in this experiment

For plant cv.Upstate in Dickeya dadantii 3937

For plant cv.Upstate across organisms

SEED Subsystems

Subsystem #Specific
Formate hydrogenase 1
Serine-glyoxylate cycle 1
Succinate dehydrogenase 1
TCA Cycle 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
formate oxidation to CO2 1 1 1
NADH to fumarate electron transfer 2 2 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
glycerol-3-phosphate to fumarate electron transfer 2 2 1
succinate to cytochrome aa3 oxidase electron transfer 2 1 1
hydrogen to fumarate electron transfer 2 1 1
succinate to cytochrome bo oxidase electron transfer 2 1 1
aerobic respiration III (alternative oxidase pathway) 3 3 1
oxalate degradation VI 4 2 1
aerobic respiration II (cytochrome c) (yeast) 4 2 1
aerobic respiration I (cytochrome c) 4 2 1
oxalate degradation III 5 2 1
incomplete reductive TCA cycle 7 5 1
pyruvate fermentation to propanoate I 7 3 1
TCA cycle VI (Helicobacter) 9 7 1
TCA cycle III (animals) 10 8 1
reductive TCA cycle I 11 8 1
L-glutamate degradation VIII (to propanoate) 11 3 1
reductive TCA cycle II 12 8 1
superpathway of C1 compounds oxidation to CO2 12 4 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 8 1
purine nucleobases degradation I (anaerobic) 15 6 1
mixed acid fermentation 16 16 1
purine nucleobases degradation II (anaerobic) 24 13 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 22 1