Experiment setATCH161 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS10140 -5.2 -3.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS20475 -4.0 -3.6 glycosyltransferase family 4 protein compare
DDA3937_RS00600 -3.1 -2.7 DcrB family lipoprotein compare
DDA3937_RS11335 -3.1 -7.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS20455 -2.9 -4.4 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS10985 -2.9 -4.2 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS00135 -2.9 -2.0 glutamate--ammonia ligase compare
DDA3937_RS19615 -2.8 -5.3 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS10950 -2.7 -7.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS14385 -2.7 -9.3 phosphate acetyltransferase compare
DDA3937_RS15420 -2.6 -8.0 IMP dehydrogenase compare
DDA3937_RS03420 -2.6 -6.0 sugar transferase compare
DDA3937_RS14910 -2.6 -12.3 beta-galactosidase compare
DDA3937_RS06615 -2.5 -15.6 UDP-glucose 4-epimerase GalE compare
DDA3937_RS03285 -2.5 -2.2 protein YgfX compare
DDA3937_RS18130 -2.4 -5.6 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS18125 -2.4 -12.0 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS09585 -2.4 -2.7 thioredoxin-disulfide reductase compare
DDA3937_RS04125 -2.4 -6.5 acetyltransferase compare
DDA3937_RS17250 -2.4 -3.1 hypothetical protein compare
DDA3937_RS02725 -2.3 -1.7 FxsA family protein compare
DDA3937_RS19015 -2.3 -9.4 glucose-6-phosphate isomerase compare
DDA3937_RS18120 -2.3 -10.3 3-isopropylmalate dehydrogenase compare
DDA3937_RS02150 -2.2 -2.4 AAA family ATPase compare
DDA3937_RS02425 -2.2 -6.6 phosphoserine phosphatase compare
DDA3937_RS22485 -2.1 -5.2 hypothetical protein compare
DDA3937_RS09650 -2.1 -11.1 pyruvate formate lyase 1-activating protein compare
DDA3937_RS18585 -2.1 -2.2 adenylosuccinate synthase compare
DDA3937_RS14380 -2.1 -3.2 acetate kinase compare
DDA3937_RS06025 -2.0 -7.5 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS18275 -2.0 -9.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS15765 -2.0 -12.3 RNA polymerase sigma factor RpoE compare
DDA3937_RS15655 -1.9 -12.7 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS04960 -1.9 -3.3 thymidylate synthase compare
DDA3937_RS01215 -1.9 -8.6 phosphoribosylamine--glycine ligase compare
DDA3937_RS11035 -1.9 -4.8 redox-regulated ATPase YchF compare
DDA3937_RS00580 -1.9 -10.8 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS01600 -1.8 -9.1 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS19000 -1.8 -2.7 EF-P beta-lysylation protein EpmB compare
DDA3937_RS11715 -1.8 -3.2 hypothetical protein compare
DDA3937_RS01820 -1.8 -2.9 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS18480 -1.8 -6.4 phosphoglycerate dehydrogenase compare
DDA3937_RS10325 -1.7 -8.9 formyltetrahydrofolate deformylase compare
DDA3937_RS13215 -1.7 -5.2 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS19510 -1.7 -2.7 peptidylprolyl isomerase A compare
DDA3937_RS01000 -1.6 -3.3 glutamate racemase compare
DDA3937_RS08400 -1.6 -2.3 H-NS histone family protein compare
DDA3937_RS09655 -1.6 -11.1 formate C-acetyltransferase compare
DDA3937_RS13515 -1.6 -8.9 protein phosphatase CheZ compare
DDA3937_RS17835 -1.6 -6.1 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS05150 -1.6 -4.8 sigma E protease regulator RseP compare
DDA3937_RS17160 -1.6 -7.7 outer membrane protein assembly factor compare
DDA3937_RS01220 -1.6 -8.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS04140 -1.5 -1.9 hypothetical protein compare
DDA3937_RS06350 -1.5 -4.1 replication initiation negative regulator SeqA compare
DDA3937_RS18310 -1.5 -8.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18305 -1.5 -10.4 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS12525 -1.5 -5.9 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS14435 -1.5 -11.6 amidophosphoribosyltransferase compare
DDA3937_RS17155 -1.5 -7.5 translocation/assembly module TamB compare
DDA3937_RS16555 -1.5 -8.1 esterase FrsA compare
DDA3937_RS01550 -1.4 -5.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS06770 -1.4 -2.2 oligosaccharide flippase family protein compare
DDA3937_RS09670 -1.4 -7.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS22235 -1.4 -4.3 immunity 8 family protein compare
DDA3937_RS14470 -1.4 -2.3 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS08565 -1.4 -2.4 GTP 3',8-cyclase MoaA compare
DDA3937_RS12855 -1.4 -4.7 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS01740 -1.4 -3.4 outer membrane channel protein TolC compare
DDA3937_RS13110 -1.3 -5.2 beta-ketoacyl-ACP synthase II compare
DDA3937_RS00910 -1.3 -8.6 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS01870 -1.3 -5.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS00140 -1.3 -5.4 ribosome-dependent GTPase TypA compare
DDA3937_RS18600 -1.3 -1.3 FtsH protease activity modulator HflK compare
DDA3937_RS18115 -1.3 -7.2 2-isopropylmalate synthase compare
DDA3937_RS01875 -1.3 -9.8 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS09195 -1.3 -3.7 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS12790 -1.3 -1.4 hotdog fold thioesterase compare
DDA3937_RS10465 -1.3 -6.8 tryptophan synthase subunit beta compare
DDA3937_RS05160 -1.3 -1.8 molecular chaperone Skp compare
DDA3937_RS16935 -1.3 -2.6 phosphoadenylyl-sulfate reductase compare
DDA3937_RS06605 -1.3 -5.8 galactokinase compare
DDA3937_RS05775 -1.3 -2.1 adenine phosphoribosyltransferase compare
DDA3937_RS01925 -1.3 -8.6 aspartate carbamoyltransferase compare
DDA3937_RS19880 -1.3 -4.9 DNA helicase II compare
DDA3937_RS10435 -1.3 -2.2 septation protein A compare
DDA3937_RS13525 -1.3 -6.8 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS05575 -1.2 -1.8 MFS transporter compare
DDA3937_RS14440 -1.2 -7.6 colicin V production protein compare
DDA3937_RS21310 -1.2 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS22035 -1.2 -2.3 immunity protein RhsIC compare
DDA3937_RS15485 -1.2 -5.7 nucleoside-diphosphate kinase compare
DDA3937_RS06755 -1.2 -3.8 glycosyltransferase family 2 protein compare
DDA3937_RS23485 -1.2 -1.5 hypothetical protein compare
DDA3937_RS01530 -1.2 -3.5 RNA polymerase factor sigma-54 compare
DDA3937_RS23190 -1.2 -1.1 hypothetical protein compare
DDA3937_RS17425 -1.2 -7.1 diaminopimelate decarboxylase compare
DDA3937_RS13170 -1.2 -3.0 dihydroorotase compare
DDA3937_RS21375 -1.2 -2.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS06695 -1.1 -5.0 dCTP deaminase compare
DDA3937_RS17830 -1.1 -1.7 DeoR/GlpR transcriptional regulator compare
DDA3937_RS15450 -1.1 -2.1 outer membrane protein assembly factor BamB compare
DDA3937_RS02965 -1.1 -1.5 transcriptional regulator ArgR compare
DDA3937_RS11330 -1.1 -4.9 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS20535 -1.1 -5.5 orotate phosphoribosyltransferase compare
DDA3937_RS00345 -1.1 -5.9 inorganic phosphate transporter PitA compare
DDA3937_RS14630 -1.1 -2.6 tRNA-Arg compare
DDA3937_RS06805 -1.1 -7.9 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS02855 -1.1 -1.4 hypothetical protein compare
DDA3937_RS00645 -1.1 -4.8 cell division protein FtsX compare
DDA3937_RS07785 -1.1 -1.3 OsmC family protein compare
DDA3937_RS02915 -1.1 -3.8 TetR/AcrR family transcriptional regulator compare
DDA3937_RS01505 -1.0 -2.0 nucleoside diphosphate kinase regulator compare
DDA3937_RS10460 -1.0 -5.1 tryptophan synthase subunit alpha compare
DDA3937_RS21605 -1.0 -4.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS15780 -1.0 -3.9 ATP-dependent RNA helicase SrmB compare
DDA3937_RS16110 -1.0 -6.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS19395 -1.0 -6.2 peptidylprolyl isomerase compare
DDA3937_RS14475 -1.0 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS19875 -1.0 -4.5 magnesium/cobalt transporter CorA compare
DDA3937_RS00560 -1.0 -5.6 insulinase family protein compare
DDA3937_RS06295 -1.0 -5.5 asparagine synthase B compare
DDA3937_RS00900 -1.0 -3.6 cell division protein ZapB compare
DDA3937_RS15750 -1.0 -1.6 SoxR-reducing system protein RseC compare
DDA3937_RS17015 -1.0 -8.7 GTP diphosphokinase compare
DDA3937_RS17180 -1.0 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS13345 -1.0 -4.9 flagellar filament capping protein FliD compare
DDA3937_RS15110 -1.0 -3.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS04490 -1.0 -2.6 cysteine synthase A compare
DDA3937_RS05645 -1.0 -6.5 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS17265 -1.0 -4.3 nitric oxide-sensing transcriptional repressor NsrR compare
DDA3937_RS05895 -1.0 -3.5 transcriptional regulator RcsB compare
DDA3937_RS07760 -1.0 -2.5 iron ABC transporter permease compare
DDA3937_RS04945 -1.0 -4.0 RNA pyrophosphohydrolase compare
DDA3937_RS15720 -1.0 -3.6 pyridoxine 5'-phosphate synthase compare
DDA3937_RS02210 -0.9 -4.3 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS15745 -0.9 -3.3 elongation factor 4 compare
DDA3937_RS08735 -0.9 -4.1 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS09120 -0.9 -1.4 YejL family protein compare
DDA3937_RS11180 -0.9 -2.9 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS06075 -0.9 -2.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS13530 -0.9 -5.8 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS18005 -0.9 -3.0 secA regulator SecM compare
DDA3937_RS14695 -0.9 -3.8 enterochelin esterase compare
DDA3937_RS09945 -0.9 -3.4 LysR family transcriptional regulator compare
DDA3937_RS06475 -0.9 -2.0 succinate--CoA ligase subunit alpha compare
DDA3937_RS14465 -0.9 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS06685 -0.9 -3.1 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS18405 -0.9 -5.5 threonine synthase compare
DDA3937_RS20415 -0.9 -2.3 rhodanese-like domain-containing protein compare
DDA3937_RS13060 -0.9 -1.5 penicillin-binding protein activator LpoB compare
DDA3937_RS08425 -0.9 -1.3 tRNA-Asn compare
DDA3937_RS18690 -0.9 -3.1 glycosyltransferase compare
DDA3937_RS06610 -0.9 -2.2 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS10575 -0.9 -2.7 electron transport complex subunit RsxA compare
DDA3937_RS10485 -0.9 -5.5 anthranilate synthase component 1 compare
DDA3937_RS10135 -0.9 -4.5 glucose-6-phosphate dehydrogenase compare
DDA3937_RS16755 -0.9 -5.0 transcriptional repressor MprA compare
DDA3937_RS04895 -0.9 -1.8 oxidative damage protection protein compare
DDA3937_RS16565 -0.8 -1.4 hypothetical protein compare
DDA3937_RS15150 -0.8 -5.0 polyphosphate kinase 1 compare
DDA3937_RS02585 -0.8 -4.7 oligosaccharide flippase family protein compare
DDA3937_RS03465 -0.8 -5.0 Na+/H+ antiporter compare
DDA3937_RS13540 -0.8 -4.1 chemotaxis protein CheW compare
DDA3937_RS23115 -0.8 -1.8 hypothetical protein compare
DDA3937_RS23045 -0.8 -1.1 stress response protein AzuC compare
DDA3937_RS10315 -0.8 -1.5 trimeric intracellular cation channel family protein compare
DDA3937_RS07750 -0.8 -2.0 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS06070 -0.8 -3.4 outer membrane protein assembly factor BamC compare
DDA3937_RS15910 -0.8 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS19785 -0.8 -1.5 gluconate operon transcriptional repressor GntR compare
DDA3937_RS04915 -0.8 -2.5 DUF2884 domain-containing protein compare
DDA3937_RS13490 -0.8 -1.3 anti-sigma-28 factor FlgM compare
DDA3937_RS10470 -0.8 -3.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS09660 -0.8 -4.5 formate transporter FocA compare
DDA3937_RS14670 -0.8 -2.9 iron-enterobactin ABC transporter permease compare
DDA3937_RS18890 -0.8 -1.5 hypothetical protein compare
DDA3937_RS03690 -0.8 -3.4 AAA family ATPase compare
DDA3937_RS08310 -0.8 -2.5 nuclear transport factor 2 family protein compare
DDA3937_RS06145 -0.8 -1.1 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS18575 -0.8 -5.3 class 1 fructose-bisphosphatase compare
DDA3937_RS00640 -0.8 -1.4 cell division ATP-binding protein FtsE compare
DDA3937_RS01410 -0.8 -2.8 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS11365 -0.7 -1.6 oligogalacturonate-specific porin KdgM compare
DDA3937_RS06235 -0.7 -3.1 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS04555 -0.7 -1.3 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS05640 -0.7 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS12510 -0.7 -2.9 L-ribulose-5-phosphate 4-epimerase compare
DDA3937_RS08585 -0.7 -1.6 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS13160 -0.7 -1.6 ribonuclease E compare
DDA3937_RS12900 -0.7 -6.2 porin compare
DDA3937_RS06305 -0.7 -3.1 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS12610 -0.7 -1.7 Grx4 family monothiol glutaredoxin compare
DDA3937_RS13545 -0.7 -5.6 chemotaxis protein CheA compare
DDA3937_RS04480 -0.7 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS00785 -0.7 -0.9 cell-envelope stress modulator CpxP compare
DDA3937_RS09590 -0.7 -2.2 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS16280 -0.7 -3.0 (S)-acetoin forming diacetyl reductase compare
DDA3937_RS00760 -0.7 -2.7 hypothetical protein compare
DDA3937_RS01560 -0.7 -3.8 calcium/sodium antiporter compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms