Experiment setATCH161 for Dickeya dadantii 3937

Compare to:

Upstate

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS15705 +4.2 25.2 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS19360 +3.9 25.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS21960 +3.7 6.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS18080 +2.5 2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS14775 +2.3 1.4 type II secretion system minor pseudopilin GspI compare
DDA3937_RS13555 +2.3 14.1 flagellar motor stator protein MotA compare
DDA3937_RS06100 +2.0 2.7 M15 family metallopeptidase compare
DDA3937_RS13550 +2.0 11.4 flagellar motor protein MotB compare
DDA3937_RS10980 +1.9 10.9 tetratricopeptide repeat-containing protein compare
DDA3937_RS13330 +1.9 16.3 methyltransferase regulatory domain-containing protein compare
DDA3937_RS22250 +1.8 2.6 DUF2627 domain-containing protein compare
DDA3937_RS11465 +1.8 14.2 EAL domain-containing protein compare
DDA3937_RS13325 +1.7 12.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS00325 +1.7 2.1 DUF1471 domain-containing protein compare
DDA3937_RS13320 +1.6 12.8 ATP-grasp domain-containing protein compare
DDA3937_RS02050 +1.6 1.4 helix-turn-helix domain-containing protein compare
DDA3937_RS23460 +1.6 1.8 hypothetical protein compare
DDA3937_RS19660 +1.5 12.2 4-alpha-glucanotransferase compare
DDA3937_RS03485 +1.4 2.0 hypothetical protein compare
DDA3937_RS05320 +1.3 4.5 hypothetical protein compare
DDA3937_RS15455 +1.3 1.7 YfgM family protein compare
DDA3937_RS03990 +1.3 1.7 CopG family transcriptional regulator compare
DDA3937_RS18615 +1.3 2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS18665 +1.3 11.1 GDP-mannose 4,6-dehydratase compare
DDA3937_RS13070 +1.3 3.9 purine nucleoside phosphoramidase compare
DDA3937_RS18960 +1.2 1.4 elongation factor P--(R)-beta-lysine ligase compare
DDA3937_RS06740 +1.2 7.8 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS07795 +1.2 2.4 GNAT family N-acetyltransferase compare
DDA3937_RS13315 +1.2 7.9 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS01835 +1.1 3.3 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS22980 +1.1 2.5 IS3 family transposase compare
DDA3937_RS13560 +1.1 7.3 flagellar transcriptional regulator FlhC compare
DDA3937_RS17665 +1.1 2.9 PAAR domain-containing protein compare
DDA3937_RS13565 +1.1 6.4 flagellar transcriptional regulator FlhD compare
DDA3937_RS18685 +1.1 7.6 WbeA compare
DDA3937_RS18550 +1.0 7.4 deoxyribonuclease I compare
DDA3937_RS14750 +1.0 2.3 prepilin peptidase compare
DDA3937_RS16860 +1.0 1.5 Rcs stress response system protein RcsF compare
DDA3937_RS04430 +1.0 1.7 Hcp family type VI secretion system effector compare
DDA3937_RS06735 +1.0 6.5 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS15715 +1.0 2.0 holo-ACP synthase compare
DDA3937_RS04235 +1.0 4.2 phage holin family protein compare
DDA3937_RS20265 +1.0 1.4 YeeE/YedE family protein compare
DDA3937_RS06990 +1.0 2.0 RHS domain-containing protein compare
DDA3937_RS19590 +1.0 1.6 intracellular growth attenuator family protein compare
DDA3937_RS03095 +1.0 5.3 lipoprotein NlpI compare
DDA3937_RS03620 +1.0 2.5 hypothetical protein compare
DDA3937_RS00055 +1.0 7.5 ribose operon transcriptional repressor RbsR compare
DDA3937_RS18815 +0.9 2.2 flavodoxin compare
DDA3937_RS04215 +0.9 2.4 phage tail protein compare
DDA3937_RS11680 +0.9 1.9 hypothetical protein compare
DDA3937_RS18190 +0.9 2.3 hypothetical protein compare
DDA3937_RS02155 +0.9 4.4 DeoR/GlpR transcriptional regulator compare
DDA3937_RS23320 +0.9 3.2 hypothetical protein compare
DDA3937_RS12345 +0.9 1.5 murein tripeptide amidase MpaA compare
DDA3937_RS04220 +0.9 4.4 hypothetical protein compare
DDA3937_RS23170 +0.9 1.1 YciY family protein compare
DDA3937_RS17395 +0.9 2.7 FCD domain-containing protein compare
DDA3937_RS18680 +0.8 2.5 GDP-L-fucose synthase compare
DDA3937_RS04225 +0.8 4.5 DUF2586 domain-containing protein compare
DDA3937_RS19005 +0.8 1.4 DUF4156 domain-containing protein compare
DDA3937_RS19515 +0.8 1.7 mandelate racemase family protein compare
DDA3937_RS01065 +0.8 0.9 elongation factor Tu compare
DDA3937_RS04315 +0.8 1.8 RnfH family protein compare
DDA3937_RS17645 +0.8 4.6 phage tail protein compare
DDA3937_RS00525 +0.8 3.6 cellulose synthase operon protein YhjQ compare
DDA3937_RS16410 +0.8 2.4 hypothetical protein compare
DDA3937_RS01700 +0.8 4.7 DnaA initiator-associating protein DiaA compare
DDA3937_RS04070 +0.8 2.1 helix-turn-helix transcriptional regulator compare
DDA3937_RS00845 +0.8 1.3 6-phosphofructokinase compare
DDA3937_RS10045 +0.7 3.2 MAPEG family protein compare
DDA3937_RS21095 +0.7 1.0 DUF1471 domain-containing protein compare
DDA3937_RS04405 +0.7 3.2 GNAT family N-acetyltransferase compare
DDA3937_RS02410 +0.7 1.9 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS09520 +0.7 2.3 heavy metal-binding domain-containing protein compare
DDA3937_RS14815 +0.7 2.6 type II secretion system assembly factor GspB compare
DDA3937_RS20125 +0.7 3.2 hypothetical protein compare
DDA3937_RS12435 +0.7 2.6 GTP-binding protein compare
DDA3937_RS07330 +0.7 1.8 flavin reductase family protein compare
DDA3937_RS10230 +0.7 1.8 ABC transporter ATP-binding protein compare
DDA3937_RS01450 +0.7 5.3 ribonuclease G compare
DDA3937_RS10680 +0.7 4.1 ATP-dependent dethiobiotin synthetase BioD compare
DDA3937_RS02630 +0.7 3.0 TIGR04141 family sporadically distributed protein compare
DDA3937_RS08020 +0.7 2.5 CDP-diacylglycerol diphosphatase compare
DDA3937_RS11145 +0.7 1.8 type II toxin-antitoxin system ParD family antitoxin compare
DDA3937_RS17650 +0.7 2.4 hypothetical protein compare
DDA3937_RS12065 +0.7 1.9 phage tail protein I compare
DDA3937_RS15405 +0.7 1.8 hypothetical protein compare
DDA3937_RS19580 +0.7 5.4 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DDA3937_RS21250 +0.7 1.8 ribonuclease Z compare
DDA3937_RS12660 +0.7 1.2 type II secretion system protein M compare
DDA3937_RS11845 +0.7 2.2 tautomerase PptA compare
DDA3937_RS13310 +0.7 4.0 FkbM family methyltransferase compare
DDA3937_RS12665 +0.7 2.3 general secretion pathway protein GspL compare
DDA3937_RS11515 +0.7 3.0 peptidase T compare
DDA3937_RS00835 +0.7 1.3 2TM domain-containing protein compare
DDA3937_RS21170 +0.6 0.9 PAS domain S-box protein compare
DDA3937_RS22450 +0.6 1.5 NAD-dependent dehydratase compare
DDA3937_RS10270 +0.6 1.9 peptide-methionine (R)-S-oxide reductase MsrB compare
DDA3937_RS02685 +0.6 0.6 hypothetical protein compare
DDA3937_RS22240 +0.6 1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
DDA3937_RS12450 +0.6 1.6 peptide ABC transporter permease SapC compare
DDA3937_RS00530 +0.6 5.1 UDP-forming cellulose synthase catalytic subunit compare
DDA3937_RS00535 +0.6 4.1 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
DDA3937_RS12620 +0.6 2.3 HTH-type transcriptional repressor PurR compare
DDA3937_RS01585 +0.6 2.7 lipid asymmetry maintenance protein MlaB compare
DDA3937_RS05185 +0.6 1.7 ribonuclease HII compare
DDA3937_RS06715 +0.6 1.5 protein-tyrosine-phosphatase compare
DDA3937_RS19435 +0.6 1.9 phosphoribulokinase compare
DDA3937_RS13945 +0.6 4.2 hypothetical protein compare
DDA3937_RS20465 +0.6 2.3 O-antigen ligase family protein compare
DDA3937_RS21135 +0.6 2.0 DUF3861 domain-containing protein compare
DDA3937_RS08715 +0.6 2.2 tRNA dihydrouridine(16) synthase DusC compare
DDA3937_RS00890 +0.6 3.6 glycerol kinase GlpK compare
DDA3937_RS19030 +0.6 2.4 Na/Pi cotransporter family protein compare
DDA3937_RS00540 +0.6 5.0 cellulose biosynthesis protein BcsC compare
DDA3937_RS01695 +0.6 2.2 divisome-associated lipoprotein YraP compare
DDA3937_RS06055 +0.6 1.2 thioredoxin-dependent thiol peroxidase compare
DDA3937_RS06445 +0.6 3.0 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS15570 +0.6 2.0 iron ABC transporter permease compare
DDA3937_RS01915 +0.6 1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS01710 +0.6 4.0 penicillin-binding protein activator compare
DDA3937_RS11965 +0.6 3.8 carboxy terminal-processing peptidase compare
DDA3937_RS08740 +0.6 1.4 glutathione S-transferase family protein compare
DDA3937_RS20545 +0.6 1.1 DUF202 domain-containing protein compare
DDA3937_RS18610 +0.6 1.9 RNA chaperone Hfq compare
DDA3937_RS02430 +0.6 2.8 YtjB family periplasmic protein compare
DDA3937_RS05630 +0.6 2.1 transcriptional regulator BolA compare
DDA3937_RS06180 +0.5 1.6 ribosome silencing factor compare
DDA3937_RS08215 +0.5 2.1 5-oxoprolinase subunit PxpB compare
DDA3937_RS01390 +0.5 1.4 YhdT family protein compare
DDA3937_RS04680 +0.5 1.8 TIGR00645 family protein compare
DDA3937_RS20190 +0.5 1.3 HTH-type transcriptional regulator HdfR compare
DDA3937_RS21390 +0.5 1.8 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
DDA3937_RS22480 +0.5 1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
DDA3937_RS11685 +0.5 0.7 HrpP protein compare
DDA3937_RS05285 +0.5 2.6 L-tyrosine/L-tryptophan isonitrile synthase family protein compare
DDA3937_RS14945 +0.5 0.8 hypothetical protein compare
DDA3937_RS10690 +0.5 1.4 DUF1283 family protein compare
DDA3937_RS14545 +0.5 1.6 type 1 glutamine amidotransferase domain-containing protein compare
DDA3937_RS14480 +0.5 2.1 sensor histidine kinase compare
DDA3937_RS02335 +0.5 2.1 hypothetical protein compare
DDA3937_RS01605 +0.5 1.1 serine endoprotease DegQ compare
DDA3937_RS10855 +0.5 1.3 hypothetical protein compare
DDA3937_RS02805 +0.5 1.5 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS09075 +0.5 0.8 hypothetical protein compare
DDA3937_RS05020 +0.5 1.9 D-2-hydroxyacid dehydrogenase family protein compare
DDA3937_RS07980 +0.5 1.0 ABC transporter permease subunit compare
DDA3937_RS04980 +0.5 1.6 potassium:proton antiporter compare
DDA3937_RS10415 +0.5 3.1 Tar ligand binding domain-containing protein compare
DDA3937_RS03670 +0.5 1.3 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
DDA3937_RS22515 +0.5 0.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS06670 +0.5 2.4 VirK family protein compare
DDA3937_RS10495 +0.5 1.6 threonylcarbamoyl-AMP synthase compare
DDA3937_RS17340 +0.5 1.9 lysophospholipid transporter LplT compare
DDA3937_RS20645 +0.5 3.1 YicC family protein compare
DDA3937_RS15660 +0.5 3.7 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS06480 +0.5 0.8 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS12750 +0.5 1.8 L,D-transpeptidase family protein compare
DDA3937_RS18870 +0.5 1.3 nitrogen fixation protein NifX compare
DDA3937_RS22280 +0.5 0.5 GpE family phage tail protein compare
DDA3937_RS06840 +0.5 2.1 hypothetical protein compare
DDA3937_RS15700 +0.5 3.7 sensor domain-containing diguanylate cyclase compare
DDA3937_RS07505 +0.5 2.3 glutathione-dependent disulfide-bond oxidoreductase compare
DDA3937_RS07930 +0.5 1.4 TonB family protein compare
DDA3937_RS12490 +0.5 3.7 exoribonuclease II compare
DDA3937_RS09910 +0.5 2.8 multicopper oxidase CueO compare
DDA3937_RS19665 +0.5 3.1 maltodextrin phosphorylase compare
DDA3937_RS07995 +0.5 1.8 aryl-sulfate sulfotransferase compare
DDA3937_RS01380 +0.5 1.2 50S ribosomal protein L11 methyltransferase compare
DDA3937_RS20425 +0.5 2.5 divergent polysaccharide deacetylase family protein compare
DDA3937_RS13370 +0.5 3.0 flagellar motor switch protein FliG compare
DDA3937_RS22820 +0.5 1.8 transposase compare
DDA3937_RS07650 +0.5 1.3 LysR family transcriptional regulator compare
DDA3937_RS10720 +0.5 1.9 hypothetical protein compare
DDA3937_RS04205 +0.5 1.7 terminase compare
DDA3937_RS09725 +0.5 0.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS18280 +0.5 2.2 acyltransferase compare
DDA3937_RS20560 +0.5 1.2 L-Ala-D/L-Glu epimerase compare
DDA3937_RS10225 +0.5 2.0 ABC transporter ATP-binding protein compare
DDA3937_RS12930 +0.5 3.1 L,D-transpeptidase compare
DDA3937_RS17640 +0.5 1.9 phage tail protein compare
DDA3937_RS09070 +0.5 1.3 hypothetical protein compare
DDA3937_RS20850 +0.4 2.0 hypothetical protein compare
DDA3937_RS12520 +0.4 1.7 stress response translation initiation inhibitor YciH compare
DDA3937_RS23495 +0.4 0.8 hypothetical protein compare
DDA3937_RS10640 +0.4 2.1 Lrp/AsnC family transcriptional regulator compare
DDA3937_RS01345 +0.4 2.3 hypothetical protein compare
DDA3937_RS09010 +0.4 1.4 transposase compare
DDA3937_RS08260 +0.4 2.2 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS14205 +0.4 1.4 hydrogenase expression/formation protein HypE compare
DDA3937_RS05710 +0.4 1.8 YbaY family lipoprotein compare
DDA3937_RS22180 +0.4 1.1 ash family protein compare
DDA3937_RS10090 +0.4 2.6 zinc ABC transporter permease subunit ZnuB compare
DDA3937_RS22040 +0.4 1.4 hypothetical protein compare
DDA3937_RS14635 +0.4 1.1 NPP1 family protein compare
DDA3937_RS04665 +0.4 2.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS14805 +0.4 2.1 type II secretion system protein GspC compare
DDA3937_RS17255 +0.4 1.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DDA3937_RS10760 +0.4 2.0 paraquat-inducible protein A compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms