Experiment setATCH160 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS10140 -5.0 -3.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS19615 -4.5 -6.1 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS11335 -3.7 -7.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS00600 -3.5 -2.1 DcrB family lipoprotein compare
DDA3937_RS17830 -3.4 -2.9 DeoR/GlpR transcriptional regulator compare
DDA3937_RS10465 -3.4 -10.2 tryptophan synthase subunit beta compare
DDA3937_RS06615 -3.4 -18.7 UDP-glucose 4-epimerase GalE compare
DDA3937_RS10950 -3.4 -8.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS18480 -3.3 -8.6 phosphoglycerate dehydrogenase compare
DDA3937_RS14910 -3.3 -14.3 beta-galactosidase compare
DDA3937_RS18120 -2.9 -11.2 3-isopropylmalate dehydrogenase compare
DDA3937_RS13515 -2.9 -11.0 protein phosphatase CheZ compare
DDA3937_RS04960 -2.9 -2.7 thymidylate synthase compare
DDA3937_RS10485 -2.8 -11.6 anthranilate synthase component 1 compare
DDA3937_RS19015 -2.8 -8.6 glucose-6-phosphate isomerase compare
DDA3937_RS21965 -2.8 -1.8 helix-turn-helix domain-containing protein compare
DDA3937_RS18130 -2.8 -4.2 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS18125 -2.8 -11.0 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS14385 -2.7 -8.6 phosphate acetyltransferase compare
DDA3937_RS20455 -2.7 -4.0 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS15765 -2.7 -15.6 RNA polymerase sigma factor RpoE compare
DDA3937_RS10460 -2.6 -7.4 tryptophan synthase subunit alpha compare
DDA3937_RS00580 -2.5 -12.8 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS01600 -2.5 -11.7 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS00910 -2.4 -12.2 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS18275 -2.4 -9.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS06025 -2.4 -8.7 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS10480 -2.3 -3.1 glutamine amidotransferase compare
DDA3937_RS12920 -2.3 -3.6 MBL fold metallo-hydrolase compare
DDA3937_RS10470 -2.3 -7.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS20475 -2.3 -2.0 glycosyltransferase family 4 protein compare
DDA3937_RS14380 -2.3 -4.2 acetate kinase compare
DDA3937_RS17835 -2.3 -8.8 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS10985 -2.3 -3.4 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS09650 -2.3 -10.9 pyruvate formate lyase 1-activating protein compare
DDA3937_RS10435 -2.3 -2.7 septation protein A compare
DDA3937_RS01740 -2.2 -4.9 outer membrane channel protein TolC compare
DDA3937_RS10475 -2.2 -6.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS09655 -2.2 -12.5 formate C-acetyltransferase compare
DDA3937_RS05150 -2.2 -6.1 sigma E protease regulator RseP compare
DDA3937_RS22235 -2.2 -4.5 immunity 8 family protein compare
DDA3937_RS06610 -2.2 -8.1 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS16935 -2.2 -3.6 phosphoadenylyl-sulfate reductase compare
DDA3937_RS15420 -2.2 -6.8 IMP dehydrogenase compare
DDA3937_RS13525 -2.2 -10.7 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS22035 -2.2 -2.8 immunity protein RhsIC compare
DDA3937_RS01820 -2.1 -4.0 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS19510 -2.1 -3.5 peptidylprolyl isomerase A compare
DDA3937_RS13530 -2.1 -10.2 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS06605 -2.1 -8.7 galactokinase compare
DDA3937_RS17160 -2.1 -9.0 outer membrane protein assembly factor compare
DDA3937_RS09235 -2.1 -5.2 1-phosphofructokinase compare
DDA3937_RS17250 -2.0 -2.0 hypothetical protein compare
DDA3937_RS08585 -2.0 -4.4 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS05645 -2.0 -12.1 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS17155 -2.0 -10.4 translocation/assembly module TamB compare
DDA3937_RS05640 -2.0 -8.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS06770 -1.9 -2.0 oligosaccharide flippase family protein compare
DDA3937_RS15655 -1.9 -12.8 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS15450 -1.9 -3.1 outer membrane protein assembly factor BamB compare
DDA3937_RS00775 -1.9 -3.4 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS21095 -1.9 -1.4 DUF1471 domain-containing protein compare
DDA3937_RS04125 -1.9 -4.6 acetyltransferase compare
DDA3937_RS12525 -1.9 -5.5 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS21310 -1.9 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS13345 -1.8 -6.8 flagellar filament capping protein FliD compare
DDA3937_RS10325 -1.8 -9.5 formyltetrahydrofolate deformylase compare
DDA3937_RS01530 -1.8 -3.9 RNA polymerase factor sigma-54 compare
DDA3937_RS08565 -1.8 -3.1 GTP 3',8-cyclase MoaA compare
DDA3937_RS15530 -1.8 -2.3 co-chaperone HscB compare
DDA3937_RS17015 -1.7 -14.1 GTP diphosphokinase compare
DDA3937_RS04140 -1.7 -1.5 hypothetical protein compare
DDA3937_RS06295 -1.7 -8.1 asparagine synthase B compare
DDA3937_RS04945 -1.7 -7.8 RNA pyrophosphohydrolase compare
DDA3937_RS18115 -1.7 -8.5 2-isopropylmalate synthase compare
DDA3937_RS18405 -1.7 -8.1 threonine synthase compare
DDA3937_RS16840 -1.7 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS06535 -1.7 -1.9 tRNA-Lys compare
DDA3937_RS14695 -1.7 -6.8 enterochelin esterase compare
DDA3937_RS20470 -1.7 -9.6 glycosyltransferase family 9 protein compare
DDA3937_RS06075 -1.7 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS06350 -1.7 -3.8 replication initiation negative regulator SeqA compare
DDA3937_RS01215 -1.7 -7.6 phosphoribosylamine--glycine ligase compare
DDA3937_RS18410 -1.6 -5.5 homoserine kinase compare
DDA3937_RS03420 -1.6 -4.4 sugar transferase compare
DDA3937_RS18385 -1.6 -6.2 molybdopterin adenylyltransferase compare
DDA3937_RS02425 -1.6 -3.6 phosphoserine phosphatase compare
DDA3937_RS11330 -1.6 -6.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS19620 -1.6 -3.0 two-component system response regulator OmpR compare
DDA3937_RS18310 -1.5 -8.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS21375 -1.5 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS14630 -1.5 -3.0 tRNA-Arg compare
DDA3937_RS14475 -1.5 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS12855 -1.5 -7.2 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS12575 -1.5 -2.5 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS06695 -1.5 -6.4 dCTP deaminase compare
DDA3937_RS03570 -1.5 -6.2 L,D-transpeptidase family protein compare
DDA3937_RS09590 -1.5 -4.2 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS11715 -1.5 -2.4 hypothetical protein compare
DDA3937_RS03465 -1.5 -9.1 Na+/H+ antiporter compare
DDA3937_RS14435 -1.5 -11.8 amidophosphoribosyltransferase compare
DDA3937_RS18305 -1.5 -8.2 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS18980 -1.5 -4.5 fumarate reductase subunit FrdD compare
DDA3937_RS13545 -1.5 -10.0 chemotaxis protein CheA compare
DDA3937_RS02970 -1.5 -1.9 malate dehydrogenase compare
DDA3937_RS13170 -1.4 -3.4 dihydroorotase compare
DDA3937_RS01220 -1.4 -8.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS09575 -1.4 -1.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS16555 -1.4 -8.6 esterase FrsA compare
DDA3937_RS04480 -1.4 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS01870 -1.4 -7.1 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS13540 -1.4 -5.6 chemotaxis protein CheW compare
DDA3937_RS13350 -1.4 -4.0 flagellar export chaperone FliS compare
DDA3937_RS18690 -1.4 -5.3 glycosyltransferase compare
DDA3937_RS11035 -1.4 -3.4 redox-regulated ATPase YchF compare
DDA3937_RS19395 -1.4 -5.7 peptidylprolyl isomerase compare
DDA3937_RS23190 -1.4 -1.8 hypothetical protein compare
DDA3937_RS14470 -1.4 -2.5 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS06805 -1.3 -8.8 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS12610 -1.3 -5.3 Grx4 family monothiol glutaredoxin compare
DDA3937_RS02835 -1.3 -6.3 altronate dehydratase compare
DDA3937_RS15110 -1.3 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS18415 -1.3 -7.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS18425 -1.3 -6.5 two-component system response regulator ArcA compare
DDA3937_RS00135 -1.3 -1.4 glutamate--ammonia ligase compare
DDA3937_RS00100 -1.3 -6.8 thiol:disulfide interchange protein DsbA compare
DDA3937_RS01875 -1.3 -9.7 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS08470 -1.2 -4.7 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS16110 -1.2 -7.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS19880 -1.2 -4.1 DNA helicase II compare
DDA3937_RS13520 -1.2 -6.0 chemotaxis response regulator CheY compare
DDA3937_RS16755 -1.2 -6.2 transcriptional repressor MprA compare
DDA3937_RS12350 -1.2 -2.1 thiol peroxidase compare
DDA3937_RS13205 -1.2 -3.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS00120 -1.2 -8.8 oxygen-independent coproporphyrinogen III oxidase compare
DDA3937_RS07760 -1.2 -2.8 iron ABC transporter permease compare
DDA3937_RS20535 -1.2 -6.3 orotate phosphoribosyltransferase compare
DDA3937_RS22485 -1.2 -3.1 hypothetical protein compare
DDA3937_RS17470 -1.2 -3.1 DUF2384 domain-containing protein compare
DDA3937_RS18970 -1.2 -7.2 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
DDA3937_RS05635 -1.2 -5.1 trigger factor compare
DDA3937_RS05160 -1.2 -1.8 molecular chaperone Skp compare
DDA3937_RS15815 -1.2 -1.3 tRNA-Val compare
DDA3937_RS03300 -1.2 -1.2 site-specific tyrosine recombinase XerD compare
DDA3937_RS11365 -1.1 -2.0 oligogalacturonate-specific porin KdgM compare
DDA3937_RS03285 -1.1 -1.2 protein YgfX compare
DDA3937_RS00140 -1.1 -4.6 ribosome-dependent GTPase TypA compare
DDA3937_RS20155 -1.1 -7.5 dihydroxy-acid dehydratase compare
DDA3937_RS15720 -1.1 -3.9 pyridoxine 5'-phosphate synthase compare
DDA3937_RS01810 -1.1 -5.9 DedA family protein compare
DDA3937_RS01550 -1.1 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS17180 -1.1 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS07750 -1.1 -2.2 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS03355 -1.1 -1.5 tRNA-Gly compare
DDA3937_RS04130 -1.1 -1.5 hypothetical protein compare
DDA3937_RS12580 -1.1 -3.7 MliC family protein compare
DDA3937_RS18975 -1.1 -4.4 fumarate reductase subunit FrdC compare
DDA3937_RS00420 -1.1 -5.2 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS19910 -1.1 -2.2 iron donor protein CyaY compare
DDA3937_RS21605 -1.1 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS02915 -1.1 -3.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS13385 -1.1 -4.6 flagella biosynthesis chaperone FliJ compare
DDA3937_RS02585 -1.1 -4.9 oligosaccharide flippase family protein compare
DDA3937_RS17425 -1.1 -5.1 diaminopimelate decarboxylase compare
DDA3937_RS10125 -1.1 -3.0 pyruvate kinase compare
DDA3937_RS08575 -1.1 -5.0 cyclic pyranopterin monophosphate synthase MoaC compare
DDA3937_RS13420 -1.1 -4.4 flagellar biosynthesis protein FliQ compare
DDA3937_RS10845 -1.0 -6.8 virulence factor SrfB compare
DDA3937_RS14670 -1.0 -4.7 iron-enterobactin ABC transporter permease compare
DDA3937_RS11210 -1.0 -2.6 septum site-determining protein MinD compare
DDA3937_RS16095 -1.0 -3.0 16S ribosomal RNA compare
DDA3937_RS17025 -1.0 -7.8 two-component sensor histidine kinase BarA compare
DDA3937_RS16490 -1.0 -1.3 hypothetical protein compare
DDA3937_RS12425 -1.0 -1.8 phage shock protein PspA compare
DDA3937_RS10725 -1.0 -2.6 acyltransferase family protein compare
DDA3937_RS15150 -1.0 -5.4 polyphosphate kinase 1 compare
DDA3937_RS00980 -1.0 -6.8 HTH-type transcriptional repressor FabR compare
DDA3937_RS04910 -1.0 -2.2 YggL family protein compare
DDA3937_RS06235 -1.0 -3.8 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS01225 -1.0 -1.6 16S ribosomal RNA compare
DDA3937_RS13415 -1.0 -5.3 flagellar type III secretion system pore protein FliP compare
DDA3937_RS13065 -1.0 -3.0 DUF1425 domain-containing protein compare
DDA3937_RS21070 -1.0 -2.7 DNA-3-methyladenine glycosylase I compare
DDA3937_RS06765 -1.0 -2.0 DUF616 domain-containing protein compare
DDA3937_RS13215 -1.0 -2.5 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS14585 -1.0 -2.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
DDA3937_RS00085 -1.0 -5.2 molybdenum cofactor guanylyltransferase MobA compare
DDA3937_RS09770 -1.0 -1.7 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS00560 -1.0 -4.5 insulinase family protein compare
DDA3937_RS09670 -1.0 -4.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS16065 -1.0 -2.5 murein transglycosylase D compare
DDA3937_RS03415 -0.9 -3.5 NAD-dependent epimerase/dehydratase family protein compare
DDA3937_RS00625 -0.9 -2.5 DUF1145 family protein compare
DDA3937_RS08570 -0.9 -2.8 molybdenum cofactor biosynthesis protein B compare
DDA3937_RS14920 -0.9 -3.5 sugar ABC transporter permease compare
DDA3937_RS19515 -0.9 -3.5 mandelate racemase family protein compare
DDA3937_RS14950 -0.9 -4.5 hypothetical protein compare
DDA3937_RS10850 -0.9 -7.1 virulence factor compare
DDA3937_RS20700 -0.9 -1.2 hypothetical protein compare
DDA3937_RS00640 -0.9 -1.3 cell division ATP-binding protein FtsE compare


Specific Phenotypes

For 5 genes in this experiment

For plant cv.Upstate in Dickeya dadantii 3937

For plant cv.Upstate across organisms