Experiment setATCH158 for Dickeya dadantii 3937

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DDA3937_RS00640 -4.2 -1.9 cell division ATP-binding protein FtsE compare
DDA3937_RS08585 -3.2 -2.8 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS18130 -3.1 -2.4 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS15910 -3.0 -1.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS06075 -3.0 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS19615 -2.9 -3.9 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS00600 -2.7 -1.2 DcrB family lipoprotein compare
DDA3937_RS10140 -2.6 -5.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS18585 -2.5 -1.1 adenylosuccinate synthase compare
DDA3937_RS14465 -2.5 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS10985 -2.5 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS15420 -2.4 -4.4 IMP dehydrogenase compare
DDA3937_RS18125 -2.4 -10.7 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS15655 -2.4 -15.4 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS02425 -2.4 -6.5 phosphoserine phosphatase compare
DDA3937_RS12855 -2.3 -8.6 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS14910 -2.3 -10.9 beta-galactosidase compare
DDA3937_RS09575 -2.3 -0.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS06025 -2.3 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS13170 -2.2 -7.5 dihydroorotase compare
DDA3937_RS09775 -2.2 -0.9 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS08400 -2.1 -1.8 H-NS histone family protein compare
DDA3937_RS11770 -2.0 -2.0 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS18305 -1.9 -11.5 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS14385 -1.9 -6.4 phosphate acetyltransferase compare
DDA3937_RS01220 -1.9 -9.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS13490 -1.9 -1.2 anti-sigma-28 factor FlgM compare
DDA3937_RS12500 -1.9 -2.0 carbon starvation protein A compare
DDA3937_RS09370 -1.9 -1.2 GTP cyclohydrolase I FolE compare
DDA3937_RS01250 -1.9 -0.8 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS12525 -1.8 -5.7 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS14435 -1.8 -10.9 amidophosphoribosyltransferase compare
DDA3937_RS20455 -1.8 -2.4 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS06615 -1.7 -11.2 UDP-glucose 4-epimerase GalE compare
DDA3937_RS09585 -1.7 -1.4 thioredoxin-disulfide reductase compare
DDA3937_RS18675 -1.7 -3.2 ABC transporter ATP-binding protein compare
DDA3937_RS01530 -1.7 -2.3 RNA polymerase factor sigma-54 compare
DDA3937_RS19670 -1.7 -2.6 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS18480 -1.7 -4.4 phosphoglycerate dehydrogenase compare
DDA3937_RS05150 -1.7 -4.2 sigma E protease regulator RseP compare
DDA3937_RS18690 -1.7 -4.4 glycosyltransferase compare
DDA3937_RS21965 -1.7 -0.9 helix-turn-helix domain-containing protein compare
DDA3937_RS10470 -1.6 -6.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS10950 -1.6 -5.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS13920 -1.6 -1.1 CcdB family protein compare
DDA3937_RS20475 -1.6 -1.1 glycosyltransferase family 4 protein compare
DDA3937_RS09070 -1.6 -1.8 hypothetical protein compare
DDA3937_RS04125 -1.6 -3.5 acetyltransferase compare
DDA3937_RS01215 -1.6 -5.7 phosphoribosylamine--glycine ligase compare
DDA3937_RS03285 -1.5 -1.5 protein YgfX compare
DDA3937_RS06755 -1.5 -3.5 glycosyltransferase family 2 protein compare
DDA3937_RS10675 -1.5 -1.2 ROK family transcriptional regulator compare
DDA3937_RS22125 -1.5 -1.5 conjugal transfer protein TrbI compare
DDA3937_RS20535 -1.5 -5.0 orotate phosphoribosyltransferase compare
DDA3937_RS06295 -1.5 -7.3 asparagine synthase B compare
DDA3937_RS18310 -1.5 -7.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18275 -1.5 -6.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS10465 -1.5 -6.3 tryptophan synthase subunit beta compare
DDA3937_RS06610 -1.5 -5.3 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS16685 -1.5 -1.5 oxalurate catabolism protein HpxZ compare
DDA3937_RS00910 -1.4 -7.6 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS13060 -1.4 -1.8 penicillin-binding protein activator LpoB compare
DDA3937_RS18670 -1.4 -2.8 ABC transporter permease compare
DDA3937_RS18080 -1.4 -1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS01875 -1.4 -8.5 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS18120 -1.4 -3.7 3-isopropylmalate dehydrogenase compare
DDA3937_RS06860 -1.4 -4.0 hemin-degrading factor compare
DDA3937_RS11335 -1.4 -3.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS14380 -1.4 -2.2 acetate kinase compare
DDA3937_RS10485 -1.4 -5.4 anthranilate synthase component 1 compare
DDA3937_RS16935 -1.4 -1.7 phosphoadenylyl-sulfate reductase compare
DDA3937_RS11090 -1.4 -2.0 CesT family type III secretion system chaperone compare
DDA3937_RS19015 -1.4 -6.7 glucose-6-phosphate isomerase compare
DDA3937_RS00135 -1.4 -0.7 glutamate--ammonia ligase compare
DDA3937_RS01000 -1.4 -1.8 glutamate racemase compare
DDA3937_RS01925 -1.3 -6.6 aspartate carbamoyltransferase compare
DDA3937_RS14695 -1.3 -5.7 enterochelin esterase compare
DDA3937_RS10420 -1.3 -1.1 YciI family protein compare
DDA3937_RS01810 -1.3 -6.9 DedA family protein compare
DDA3937_RS07980 -1.3 -1.5 ABC transporter permease subunit compare
DDA3937_RS02965 -1.3 -1.2 transcriptional regulator ArgR compare
DDA3937_RS14235 -1.3 -2.1 HyaD/HybD family hydrogenase maturation endopeptidase compare
DDA3937_RS18330 -1.3 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS06805 -1.3 -7.5 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS22235 -1.3 -3.0 immunity 8 family protein compare
DDA3937_RS00345 -1.3 -4.4 inorganic phosphate transporter PitA compare
DDA3937_RS02915 -1.3 -2.8 TetR/AcrR family transcriptional regulator compare
DDA3937_RS19510 -1.3 -1.5 peptidylprolyl isomerase A compare
DDA3937_RS00645 -1.3 -4.7 cell division protein FtsX compare
DDA3937_RS01065 -1.3 -0.6 elongation factor Tu compare
DDA3937_RS10755 -1.3 -2.3 paraquat-inducible protein A compare
DDA3937_RS03300 -1.3 -0.9 site-specific tyrosine recombinase XerD compare
DDA3937_RS06210 -1.3 -1.4 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS17835 -1.3 -4.9 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS13345 -1.2 -4.4 flagellar filament capping protein FliD compare
DDA3937_RS07795 -1.2 -1.4 GNAT family N-acetyltransferase compare
DDA3937_RS17155 -1.2 -6.3 translocation/assembly module TamB compare
DDA3937_RS02725 -1.2 -1.1 FxsA family protein compare
DDA3937_RS10460 -1.2 -3.7 tryptophan synthase subunit alpha compare
DDA3937_RS13780 -1.2 -1.6 helix-turn-helix domain-containing protein compare
DDA3937_RS02410 -1.2 -1.5 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS18115 -1.2 -6.3 2-isopropylmalate synthase compare
DDA3937_RS11875 -1.2 -2.7 AAA family ATPase compare
DDA3937_RS05575 -1.2 -0.8 MFS transporter compare
DDA3937_RS10475 -1.2 -4.2 anthranilate phosphoribosyltransferase compare
DDA3937_RS06350 -1.2 -1.9 replication initiation negative regulator SeqA compare
DDA3937_RS18555 -1.2 -3.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
DDA3937_RS10540 -1.2 -0.9 HTH-type transcriptional regulator CysB compare
DDA3937_RS09120 -1.2 -0.8 YejL family protein compare
DDA3937_RS22175 -1.2 -1.2 IS3 family transposase compare
DDA3937_RS20700 -1.1 -0.6 hypothetical protein compare
DDA3937_RS07985 -1.1 -1.7 hypothetical protein compare
DDA3937_RS06735 -1.1 -5.6 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS14655 -1.1 -4.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS11440 -1.1 -2.6 YebO family protein compare
DDA3937_RS01870 -1.1 -2.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS08510 -1.1 -5.5 biotin synthase BioB compare
DDA3937_RS04910 -1.1 -1.5 YggL family protein compare
DDA3937_RS22130 -1.1 -1.7 recombinase compare
DDA3937_RS05640 -1.1 -4.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS10170 -1.1 -3.4 non-heme ferritin compare
DDA3937_RS01820 -1.1 -2.1 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS18655 -1.1 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS10560 -1.1 -2.9 electron transport complex subunit RsxD compare
DDA3937_RS06745 -1.1 -3.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DDA3937_RS12280 -1.1 -0.6 YnbE family lipoprotein compare
DDA3937_RS13515 -1.1 -4.8 protein phosphatase CheZ compare
DDA3937_RS02395 -1.1 -0.7 Xaa-Pro aminopeptidase compare
DDA3937_RS18425 -1.1 -5.3 two-component system response regulator ArcA compare
DDA3937_RS09670 -1.1 -3.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS15765 -1.1 -7.6 RNA polymerase sigma factor RpoE compare
DDA3937_RS15815 -1.1 -0.6 tRNA-Val compare
DDA3937_RS08540 -1.1 -2.6 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
DDA3937_RS12430 -1.1 -1.6 phage shock protein operon transcriptional activator compare
DDA3937_RS17015 -1.1 -8.3 GTP diphosphokinase compare
DDA3937_RS17830 -1.0 -0.9 DeoR/GlpR transcriptional regulator compare
DDA3937_RS16560 -1.0 -4.1 xanthine phosphoribosyltransferase compare
DDA3937_RS16130 -1.0 -5.2 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS13220 -1.0 -2.6 glucan biosynthesis protein G compare
DDA3937_RS02790 -1.0 -0.8 YqjK-like family protein compare
DDA3937_RS16105 -1.0 -2.8 polyphenol oxidase compare
DDA3937_RS10405 -1.0 -1.4 cardiolipin synthase compare
DDA3937_RS18870 -1.0 -2.8 nitrogen fixation protein NifX compare
DDA3937_RS18405 -1.0 -5.1 threonine synthase compare
DDA3937_RS13110 -1.0 -3.5 beta-ketoacyl-ACP synthase II compare
DDA3937_RS05895 -1.0 -3.1 transcriptional regulator RcsB compare
DDA3937_RS01740 -1.0 -2.3 outer membrane channel protein TolC compare
DDA3937_RS14920 -1.0 -3.3 sugar ABC transporter permease compare
DDA3937_RS15335 -1.0 -2.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DDA3937_RS09655 -1.0 -6.4 formate C-acetyltransferase compare
DDA3937_RS21095 -1.0 -0.5 DUF1471 domain-containing protein compare
DDA3937_RS01550 -1.0 -2.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS03265 -1.0 -2.2 HD domain-containing protein compare
DDA3937_RS21310 -1.0 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS22560 -1.0 -1.0 membrane protein insertion efficiency factor YidD compare
DDA3937_RS00945 -1.0 -1.3 met regulon transcriptional regulator MetJ compare
DDA3937_RS11180 -1.0 -2.6 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS00005 -1.0 -2.5 FMN-binding protein MioC compare
DDA3937_RS12770 -1.0 -2.1 Fe-S cluster assembly ATPase SufC compare
DDA3937_RS15155 -1.0 -3.3 exopolyphosphatase compare
DDA3937_RS20130 -1.0 -5.2 ketol-acid reductoisomerase compare
DDA3937_RS06765 -1.0 -1.5 DUF616 domain-containing protein compare
DDA3937_RS01590 -1.0 -2.4 BolA family iron metabolism protein IbaG compare
DDA3937_RS15240 -1.0 -2.6 cell division inhibitor SulA compare
DDA3937_RS05645 -1.0 -5.5 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS15780 -1.0 -4.2 ATP-dependent RNA helicase SrmB compare
DDA3937_RS04960 -1.0 -1.3 thymidylate synthase compare
DDA3937_RS04605 -1.0 -2.0 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS10330 -1.0 -3.9 YchJ family protein compare
DDA3937_RS06605 -1.0 -3.0 galactokinase compare
DDA3937_RS05770 -1.0 -3.0 DUF454 family protein compare
DDA3937_RS08565 -1.0 -1.4 GTP 3',8-cyclase MoaA compare
DDA3937_RS03465 -1.0 -4.9 Na+/H+ antiporter compare
DDA3937_RS12645 -1.0 -1.7 type II secretion system pilot lipoprotein GspS compare
DDA3937_RS07675 -1.0 -2.0 CRISPR-associated endonuclease Cas2 compare
DDA3937_RS16555 -1.0 -4.5 esterase FrsA compare
DDA3937_RS19620 -1.0 -1.8 two-component system response regulator OmpR compare
DDA3937_RS10065 -1.0 -2.8 YebC/PmpR family DNA-binding transcriptional regulator compare
DDA3937_RS23470 -1.0 -2.6 hypothetical protein compare
DDA3937_RS04945 -0.9 -3.9 RNA pyrophosphohydrolase compare
DDA3937_RS17160 -0.9 -4.8 outer membrane protein assembly factor compare
DDA3937_RS05160 -0.9 -0.7 molecular chaperone Skp compare
DDA3937_RS23520 -0.9 -1.1 cell wall anchor protein compare
DDA3937_RS05650 -0.9 -2.3 endopeptidase La compare
DDA3937_RS22435 -0.9 -0.8 AlpA family transcriptional regulator compare
DDA3937_RS20470 -0.9 -2.9 glycosyltransferase family 9 protein compare
DDA3937_RS16110 -0.9 -4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS06490 -0.9 -0.9 cyd operon protein YbgE compare
DDA3937_RS16620 -0.9 -2.3 methylthioribulose 1-phosphate dehydratase compare
DDA3937_RS16860 -0.9 -3.1 Rcs stress response system protein RcsF compare
DDA3937_RS09650 -0.9 -2.9 pyruvate formate lyase 1-activating protein compare
DDA3937_RS07235 -0.9 -1.0 response regulator transcription factor compare
DDA3937_RS00580 -0.9 -4.4 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS07765 -0.9 -1.8 ABC transporter ATP-binding protein compare
DDA3937_RS02360 -0.9 -2.3 ABC transporter permease compare
DDA3937_RS12780 -0.9 -1.7 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS23455 -0.9 -1.0 hypothetical protein compare
DDA3937_RS09010 -0.9 -2.1 transposase compare
DDA3937_RS21460 -0.9 -3.0 phosphate ABC transporter permease PstA compare
DDA3937_RS04980 -0.9 -1.8 potassium:proton antiporter compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Norland across organisms