Experiment setATCH155 for Dickeya dadantii 3937

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DDA3937_RS00600 -3.4 -1.6 DcrB family lipoprotein compare
DDA3937_RS18130 -3.1 -2.8 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS19615 -3.1 -5.2 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS10985 -3.1 -3.8 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS14910 -2.9 -12.0 beta-galactosidase compare
DDA3937_RS15655 -2.9 -19.5 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS10140 -2.9 -6.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS05150 -2.9 -6.0 sigma E protease regulator RseP compare
DDA3937_RS15420 -2.8 -7.0 IMP dehydrogenase compare
DDA3937_RS01600 -2.8 -12.6 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS01220 -2.8 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS18125 -2.8 -9.8 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18480 -2.7 -7.7 phosphoglycerate dehydrogenase compare
DDA3937_RS14435 -2.6 -15.9 amidophosphoribosyltransferase compare
DDA3937_RS15765 -2.6 -14.3 RNA polymerase sigma factor RpoE compare
DDA3937_RS06075 -2.5 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS10435 -2.5 -2.2 septation protein A compare
DDA3937_RS06475 -2.5 -2.6 succinate--CoA ligase subunit alpha compare
DDA3937_RS18120 -2.5 -8.7 3-isopropylmalate dehydrogenase compare
DDA3937_RS12855 -2.4 -8.1 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS03285 -2.3 -2.8 protein YgfX compare
DDA3937_RS06770 -2.3 -2.3 oligosaccharide flippase family protein compare
DDA3937_RS02325 -2.3 -1.5 HTH-type transcriptional activator RhaS compare
DDA3937_RS16935 -2.3 -3.1 phosphoadenylyl-sulfate reductase compare
DDA3937_RS02425 -2.3 -8.9 phosphoserine phosphatase compare
DDA3937_RS04140 -2.3 -1.7 hypothetical protein compare
DDA3937_RS17830 -2.3 -2.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS09585 -2.3 -1.9 thioredoxin-disulfide reductase compare
DDA3937_RS18585 -2.3 -1.5 adenylosuccinate synthase compare
DDA3937_RS11335 -2.2 -6.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS01000 -2.2 -3.2 glutamate racemase compare
DDA3937_RS22035 -2.1 -2.3 immunity protein RhsIC compare
DDA3937_RS06615 -2.1 -12.9 UDP-glucose 4-epimerase GalE compare
DDA3937_RS18310 -2.1 -11.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS03420 -2.1 -3.5 sugar transferase compare
DDA3937_RS02725 -2.1 -2.0 FxsA family protein compare
DDA3937_RS18115 -2.1 -11.4 2-isopropylmalate synthase compare
DDA3937_RS18275 -2.1 -7.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS20415 -2.0 -3.3 rhodanese-like domain-containing protein compare
DDA3937_RS14675 -2.0 -2.8 ABC transporter ATP-binding protein compare
DDA3937_RS01740 -2.0 -4.3 outer membrane channel protein TolC compare
DDA3937_RS01925 -2.0 -10.4 aspartate carbamoyltransferase compare
DDA3937_RS14475 -2.0 -5.3 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS01215 -2.0 -7.8 phosphoribosylamine--glycine ligase compare
DDA3937_RS18305 -2.0 -11.0 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS11715 -2.0 -3.4 hypothetical protein compare
DDA3937_RS10325 -2.0 -9.7 formyltetrahydrofolate deformylase compare
DDA3937_RS12525 -1.9 -5.1 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS04125 -1.9 -3.2 acetyltransferase compare
DDA3937_RS06295 -1.9 -8.8 asparagine synthase B compare
DDA3937_RS15110 -1.9 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS20535 -1.8 -8.7 orotate phosphoribosyltransferase compare
DDA3937_RS01820 -1.8 -2.5 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS02815 -1.8 -1.9 transcriptional regulator ExuR compare
DDA3937_RS06025 -1.8 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS04910 -1.7 -2.3 YggL family protein compare
DDA3937_RS15910 -1.7 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS19910 -1.7 -1.7 iron donor protein CyaY compare
DDA3937_RS06350 -1.7 -3.9 replication initiation negative regulator SeqA compare
DDA3937_RS18980 -1.7 -4.7 fumarate reductase subunit FrdD compare
DDA3937_RS14440 -1.6 -7.6 colicin V production protein compare
DDA3937_RS13215 -1.6 -4.3 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS06755 -1.6 -3.2 glycosyltransferase family 2 protein compare
DDA3937_RS17425 -1.6 -7.7 diaminopimelate decarboxylase compare
DDA3937_RS06870 -1.6 -2.3 iron ABC transporter permease compare
DDA3937_RS22235 -1.6 -3.9 immunity 8 family protein compare
DDA3937_RS11275 -1.5 -6.6 TerC family protein compare
DDA3937_RS14095 -1.5 -1.4 ABC transporter ATP-binding protein compare
DDA3937_RS00875 -1.5 -3.1 DUF805 domain-containing protein compare
DDA3937_RS06270 -1.5 -1.8 tRNA-Met compare
DDA3937_RS17835 -1.5 -5.0 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS18410 -1.5 -5.4 homoserine kinase compare
DDA3937_RS03945 -1.5 -3.7 DNA sulfur modification protein DndE compare
DDA3937_RS09575 -1.5 -0.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS00100 -1.5 -8.4 thiol:disulfide interchange protein DsbA compare
DDA3937_RS14665 -1.5 -4.6 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS09235 -1.5 -3.1 1-phosphofructokinase compare
DDA3937_RS11035 -1.5 -3.2 redox-regulated ATPase YchF compare
DDA3937_RS19510 -1.5 -1.7 peptidylprolyl isomerase A compare
DDA3937_RS00910 -1.5 -7.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS21375 -1.4 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS13205 -1.4 -3.4 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS05635 -1.4 -5.1 trigger factor compare
DDA3937_RS18145 -1.4 -2.4 hypothetical protein compare
DDA3937_RS00975 -1.4 -1.7 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS19930 -1.4 -3.5 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS09120 -1.4 -1.3 YejL family protein compare
DDA3937_RS05500 -1.4 -5.3 transcriptional regulator NrdR compare
DDA3937_RS05645 -1.4 -6.5 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS00560 -1.4 -6.5 insulinase family protein compare
DDA3937_RS12800 -1.4 -2.9 AI-2E family transporter YdiK compare
DDA3937_RS14695 -1.4 -4.9 enterochelin esterase compare
DDA3937_RS20410 -1.4 -2.1 protein-export chaperone SecB compare
DDA3937_RS10675 -1.3 -1.5 ROK family transcriptional regulator compare
DDA3937_RS17155 -1.3 -5.8 translocation/assembly module TamB compare
DDA3937_RS00135 -1.3 -1.0 glutamate--ammonia ligase compare
DDA3937_RS19015 -1.3 -4.8 glucose-6-phosphate isomerase compare
DDA3937_RS18405 -1.3 -7.1 threonine synthase compare
DDA3937_RS05640 -1.3 -5.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS14700 -1.3 -8.9 TonB-dependent siderophore receptor compare
DDA3937_RS19880 -1.3 -4.9 DNA helicase II compare
DDA3937_RS06070 -1.3 -4.2 outer membrane protein assembly factor BamC compare
DDA3937_RS00645 -1.3 -5.2 cell division protein FtsX compare
DDA3937_RS11330 -1.2 -6.1 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS00125 -1.2 -1.8 nitrogen regulation protein NR(I) compare
DDA3937_RS13515 -1.2 -6.2 protein phosphatase CheZ compare
DDA3937_RS19395 -1.2 -4.7 peptidylprolyl isomerase compare
DDA3937_RS05895 -1.2 -4.0 transcriptional regulator RcsB compare
DDA3937_RS13345 -1.2 -5.7 flagellar filament capping protein FliD compare
DDA3937_RS13350 -1.2 -3.4 flagellar export chaperone FliS compare
DDA3937_RS11590 -1.2 -2.9 hypothetical protein compare
DDA3937_RS00785 -1.2 -1.5 cell-envelope stress modulator CpxP compare
DDA3937_RS04480 -1.2 -4.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS01225 -1.2 -1.4 16S ribosomal RNA compare
DDA3937_RS22485 -1.2 -2.1 hypothetical protein compare
DDA3937_RS12805 -1.2 -7.2 phosphoenolpyruvate synthase compare
DDA3937_RS00005 -1.2 -3.0 FMN-binding protein MioC compare
DDA3937_RS14655 -1.2 -5.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS14630 -1.2 -2.5 tRNA-Arg compare
DDA3937_RS13525 -1.2 -5.9 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS13530 -1.2 -5.9 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS15485 -1.2 -5.4 nucleoside-diphosphate kinase compare
DDA3937_RS06695 -1.2 -3.5 dCTP deaminase compare
DDA3937_RS10580 -1.2 -1.7 transcription modulator YdgT compare
DDA3937_RS04960 -1.2 -1.8 thymidylate synthase compare
DDA3937_RS17160 -1.2 -5.4 outer membrane protein assembly factor compare
DDA3937_RS01410 -1.1 -2.9 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS20455 -1.1 -1.9 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS04945 -1.1 -5.0 RNA pyrophosphohydrolase compare
DDA3937_RS16755 -1.1 -4.3 transcriptional repressor MprA compare
DDA3937_RS16840 -1.1 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS05160 -1.1 -1.6 molecular chaperone Skp compare
DDA3937_RS10440 -1.1 -2.4 UPF0259 family protein compare
DDA3937_RS21965 -1.1 -1.0 helix-turn-helix domain-containing protein compare
DDA3937_RS17180 -1.1 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS16110 -1.1 -7.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS23460 -1.1 -1.7 hypothetical protein compare
DDA3937_RS06610 -1.1 -4.6 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS06305 -1.1 -5.1 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS13920 -1.1 -1.2 CcdB family protein compare
DDA3937_RS19645 -1.1 -2.3 pimeloyl-ACP methyl ester esterase BioH compare
DDA3937_RS11685 -1.1 -1.2 HrpP protein compare
DDA3937_RS16490 -1.1 -1.1 hypothetical protein compare
DDA3937_RS02585 -1.1 -4.1 oligosaccharide flippase family protein compare
DDA3937_RS20975 -1.1 -5.5 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS20855 -1.1 -1.8 acyl carrier protein compare
DDA3937_RS03100 -1.0 -1.9 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS01530 -1.0 -2.7 RNA polymerase factor sigma-54 compare
DDA3937_RS03565 -1.0 -3.1 MarR family transcriptional regulator compare
DDA3937_RS00915 -1.0 -3.2 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS06685 -1.0 -3.2 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS18975 -1.0 -4.9 fumarate reductase subunit FrdC compare
DDA3937_RS22435 -1.0 -1.2 AlpA family transcriptional regulator compare
DDA3937_RS05670 -1.0 -2.1 7-cyano-7-deazaguanine synthase QueC compare
DDA3937_RS06805 -1.0 -6.5 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS22175 -1.0 -1.3 IS3 family transposase compare
DDA3937_RS10480 -1.0 -1.9 glutamine amidotransferase compare
DDA3937_RS18690 -1.0 -3.1 glycosyltransferase compare
DDA3937_RS15780 -1.0 -4.3 ATP-dependent RNA helicase SrmB compare
DDA3937_RS09670 -1.0 -4.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS04315 -1.0 -2.2 RnfH family protein compare
DDA3937_RS19035 -1.0 -6.0 DASS family sodium-coupled anion symporter compare
DDA3937_RS12770 -1.0 -2.8 Fe-S cluster assembly ATPase SufC compare
DDA3937_RS09650 -1.0 -5.4 pyruvate formate lyase 1-activating protein compare
DDA3937_RS01550 -1.0 -3.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS02545 -1.0 -5.2 heavy metal translocating P-type ATPase compare
DDA3937_RS06235 -1.0 -3.6 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS09655 -1.0 -7.2 formate C-acetyltransferase compare
DDA3937_RS18575 -1.0 -6.3 class 1 fructose-bisphosphatase compare
DDA3937_RS17015 -1.0 -7.9 GTP diphosphokinase compare
DDA3937_RS00640 -1.0 -1.2 cell division ATP-binding protein FtsE compare
DDA3937_RS12500 -1.0 -1.7 carbon starvation protein A compare
DDA3937_RS23305 -1.0 -1.5 hypothetical protein compare
DDA3937_RS17150 -1.0 -1.4 gamma-glutamylcyclotransferase compare
DDA3937_RS08415 -1.0 -1.5 IS3 family transposase compare
DDA3937_RS23190 -1.0 -1.2 hypothetical protein compare
DDA3937_RS08470 -1.0 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS14380 -1.0 -2.3 acetate kinase compare
DDA3937_RS00900 -0.9 -3.0 cell division protein ZapB compare
DDA3937_RS18840 -0.9 -2.2 nitrogen fixation protein NifW compare
DDA3937_RS08535 -0.9 -2.9 glyoxalase/bleomycin resistance/dioxygenase family protein compare
DDA3937_RS08280 -0.9 -2.1 RhsIA family immunity protein compare
DDA3937_RS06155 -0.9 -5.7 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS13170 -0.9 -2.3 dihydroorotase compare
DDA3937_RS18010 -0.9 -0.7 DUF721 domain-containing protein compare
DDA3937_RS02765 -0.9 -5.1 zinc uptake transcriptional repressor Zur compare
DDA3937_RS15340 -0.9 -1.9 hydroxyethylthiazole kinase compare
DDA3937_RS10950 -0.9 -2.1 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS01810 -0.9 -4.3 DedA family protein compare
DDA3937_RS15650 -0.9 -6.0 HAMP domain-containing histidine kinase compare
DDA3937_RS13930 -0.9 -1.7 transposase compare
DDA3937_RS06360 -0.9 -1.3 EamA family transporter compare
DDA3937_RS21605 -0.9 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS17995 -0.9 -1.6 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS23335 -0.9 -2.0 leu operon leader peptide compare
DDA3937_RS16640 -0.9 -5.1 alanine--glyoxylate aminotransferase family protein compare
DDA3937_RS16065 -0.9 -2.5 murein transglycosylase D compare
DDA3937_RS23075 -0.9 -2.4 hypothetical protein compare
DDA3937_RS17930 -0.9 -2.4 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
DDA3937_RS13155 -0.9 -3.3 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Norland across organisms