Experiment setATCH154 for Dickeya dadantii 3937

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -4.3 -3.9 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS00640 -4.3 -3.1 cell division ATP-binding protein FtsE compare
DDA3937_RS17830 -3.8 -2.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS19615 -3.7 -6.5 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS18120 -3.6 -10.7 3-isopropylmalate dehydrogenase compare
DDA3937_RS06075 -3.5 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS10140 -3.3 -7.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS20455 -3.3 -3.9 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS02425 -3.1 -9.3 phosphoserine phosphatase compare
DDA3937_RS00600 -3.0 -2.3 DcrB family lipoprotein compare
DDA3937_RS06025 -3.0 -9.4 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS18480 -2.9 -8.5 phosphoglycerate dehydrogenase compare
DDA3937_RS15655 -2.9 -18.3 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS14910 -2.8 -12.7 beta-galactosidase compare
DDA3937_RS18125 -2.8 -10.7 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS05150 -2.8 -7.1 sigma E protease regulator RseP compare
DDA3937_RS00135 -2.7 -1.6 glutamate--ammonia ligase compare
DDA3937_RS01820 -2.6 -3.8 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS14435 -2.6 -13.4 amidophosphoribosyltransferase compare
DDA3937_RS20885 -2.4 -2.7 MarR family transcriptional regulator compare
DDA3937_RS01215 -2.3 -7.2 phosphoribosylamine--glycine ligase compare
DDA3937_RS09575 -2.2 -1.3 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS06350 -2.2 -5.5 replication initiation negative regulator SeqA compare
DDA3937_RS03420 -2.2 -4.2 sugar transferase compare
DDA3937_RS04125 -2.2 -4.4 acetyltransferase compare
DDA3937_RS06615 -2.2 -10.8 UDP-glucose 4-epimerase GalE compare
DDA3937_RS11335 -2.1 -4.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS01000 -2.1 -3.7 glutamate racemase compare
DDA3937_RS04960 -2.1 -3.4 thymidylate synthase compare
DDA3937_RS15765 -2.1 -13.4 RNA polymerase sigma factor RpoE compare
DDA3937_RS09585 -2.1 -2.2 thioredoxin-disulfide reductase compare
DDA3937_RS06295 -2.1 -10.9 asparagine synthase B compare
DDA3937_RS01220 -2.1 -9.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS11035 -2.0 -5.2 redox-regulated ATPase YchF compare
DDA3937_RS10465 -2.0 -7.8 tryptophan synthase subunit beta compare
DDA3937_RS01600 -2.0 -8.6 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS12855 -1.9 -7.1 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS18305 -1.8 -9.3 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS18115 -1.8 -7.8 2-isopropylmalate synthase compare
DDA3937_RS09670 -1.8 -7.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS15910 -1.7 -1.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS15420 -1.7 -2.9 IMP dehydrogenase compare
DDA3937_RS10985 -1.7 -3.1 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS03280 -1.7 -2.3 FAD assembly factor SdhE compare
DDA3937_RS14440 -1.7 -7.1 colicin V production protein compare
DDA3937_RS18310 -1.7 -8.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS06770 -1.7 -1.7 oligosaccharide flippase family protein compare
DDA3937_RS17835 -1.7 -6.0 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS10325 -1.7 -8.8 formyltetrahydrofolate deformylase compare
DDA3937_RS07760 -1.6 -3.6 iron ABC transporter permease compare
DDA3937_RS13215 -1.6 -3.7 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS11715 -1.6 -2.9 hypothetical protein compare
DDA3937_RS04480 -1.6 -5.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS13170 -1.6 -5.6 dihydroorotase compare
DDA3937_RS16935 -1.6 -2.9 phosphoadenylyl-sulfate reductase compare
DDA3937_RS01530 -1.6 -3.7 RNA polymerase factor sigma-54 compare
DDA3937_RS01550 -1.6 -5.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS18275 -1.6 -6.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS01925 -1.6 -7.3 aspartate carbamoyltransferase compare
DDA3937_RS10460 -1.6 -5.0 tryptophan synthase subunit alpha compare
DDA3937_RS12535 -1.6 -3.5 LapA family protein compare
DDA3937_RS14695 -1.6 -7.8 enterochelin esterase compare
DDA3937_RS06685 -1.6 -3.2 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS05645 -1.5 -8.3 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS05500 -1.5 -5.8 transcriptional regulator NrdR compare
DDA3937_RS15545 -1.5 -1.5 cysteine desulfurase compare
DDA3937_RS13355 -1.5 -2.7 flagellar protein FliT compare
DDA3937_RS03300 -1.5 -1.5 site-specific tyrosine recombinase XerD compare
DDA3937_RS19510 -1.5 -2.9 peptidylprolyl isomerase A compare
DDA3937_RS20535 -1.5 -6.8 orotate phosphoribosyltransferase compare
DDA3937_RS19000 -1.5 -2.0 EF-P beta-lysylation protein EpmB compare
DDA3937_RS21375 -1.5 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS10555 -1.5 -2.4 electron transport complex subunit RsxG compare
DDA3937_RS15110 -1.5 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS16490 -1.5 -1.5 hypothetical protein compare
DDA3937_RS15815 -1.5 -1.4 tRNA-Val compare
DDA3937_RS06755 -1.4 -3.0 glycosyltransferase family 2 protein compare
DDA3937_RS21310 -1.4 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS14385 -1.4 -5.3 phosphate acetyltransferase compare
DDA3937_RS05755 -1.4 -2.7 pleiotropic regulatory protein RsmS compare
DDA3937_RS05105 -1.4 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS19880 -1.4 -4.8 DNA helicase II compare
DDA3937_RS06535 -1.4 -1.1 tRNA-Lys compare
DDA3937_RS18690 -1.3 -4.3 glycosyltransferase compare
DDA3937_RS17425 -1.3 -7.2 diaminopimelate decarboxylase compare
DDA3937_RS20130 -1.3 -6.4 ketol-acid reductoisomerase compare
DDA3937_RS05640 -1.3 -6.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS12525 -1.3 -2.2 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS12800 -1.3 -3.8 AI-2E family transporter YdiK compare
DDA3937_RS14870 -1.3 -2.3 YjfB family protein compare
DDA3937_RS23190 -1.3 -1.5 hypothetical protein compare
DDA3937_RS06765 -1.3 -2.2 DUF616 domain-containing protein compare
DDA3937_RS14675 -1.3 -2.2 ABC transporter ATP-binding protein compare
DDA3937_RS00140 -1.3 -5.0 ribosome-dependent GTPase TypA compare
DDA3937_RS01740 -1.2 -2.3 outer membrane channel protein TolC compare
DDA3937_RS18405 -1.2 -6.8 threonine synthase compare
DDA3937_RS16685 -1.2 -1.9 oxalurate catabolism protein HpxZ compare
DDA3937_RS17250 -1.2 -1.6 hypothetical protein compare
DDA3937_RS17160 -1.2 -5.8 outer membrane protein assembly factor compare
DDA3937_RS18585 -1.2 -1.1 adenylosuccinate synthase compare
DDA3937_RS05160 -1.2 -1.8 molecular chaperone Skp compare
DDA3937_RS02915 -1.2 -3.4 TetR/AcrR family transcriptional regulator compare
DDA3937_RS06040 -1.2 -1.5 DnaA inactivator Hda compare
DDA3937_RS21990 -1.2 -2.8 hypothetical protein compare
DDA3937_RS22235 -1.1 -3.4 immunity 8 family protein compare
DDA3937_RS00975 -1.1 -1.5 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS22175 -1.1 -1.9 IS3 family transposase compare
DDA3937_RS14475 -1.1 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS17700 -1.1 -2.0 AAA family ATPase compare
DDA3937_RS02855 -1.1 -1.2 hypothetical protein compare
DDA3937_RS15530 -1.1 -1.4 co-chaperone HscB compare
DDA3937_RS13345 -1.1 -3.4 flagellar filament capping protein FliD compare
DDA3937_RS06070 -1.1 -3.9 outer membrane protein assembly factor BamC compare
DDA3937_RS06610 -1.1 -4.1 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS02725 -1.1 -1.2 FxsA family protein compare
DDA3937_RS10675 -1.1 -1.5 ROK family transcriptional regulator compare
DDA3937_RS20970 -1.1 -3.2 mannitol operon repressor compare
DDA3937_RS19015 -1.1 -4.7 glucose-6-phosphate isomerase compare
DDA3937_RS09115 -1.1 -4.5 DUF3413 domain-containing protein compare
DDA3937_RS04140 -1.1 -1.3 hypothetical protein compare
DDA3937_RS14465 -1.1 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS00645 -1.1 -4.6 cell division protein FtsX compare
DDA3937_RS00560 -1.0 -6.1 insulinase family protein compare
DDA3937_RS07005 -1.0 -1.4 type I addiction module toxin, SymE family compare
DDA3937_RS11330 -1.0 -5.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS23400 -1.0 -1.7 hypothetical protein compare
DDA3937_RS13220 -1.0 -3.6 glucan biosynthesis protein G compare
DDA3937_RS10950 -1.0 -4.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS04360 -1.0 -3.1 YaiI/YqxD family protein compare
DDA3937_RS13240 -1.0 -2.4 GhoT/OrtT family toxin compare
DDA3937_RS10475 -1.0 -4.7 anthranilate phosphoribosyltransferase compare
DDA3937_RS06605 -1.0 -4.5 galactokinase compare
DDA3937_RS06805 -1.0 -6.7 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS16085 -1.0 -1.8 23S ribosomal RNA compare
DDA3937_RS06235 -1.0 -4.6 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS04310 -1.0 -1.6 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS16130 -1.0 -5.5 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS17265 -1.0 -3.1 nitric oxide-sensing transcriptional repressor NsrR compare
DDA3937_RS11365 -1.0 -1.5 oligogalacturonate-specific porin KdgM compare
DDA3937_RS08735 -1.0 -4.3 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS00900 -1.0 -3.2 cell division protein ZapB compare
DDA3937_RS03020 -1.0 -1.1 ribosome assembly RNA-binding protein YhbY compare
DDA3937_RS12575 -0.9 -1.2 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS14665 -0.9 -4.3 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS02965 -0.9 -1.3 transcriptional regulator ArgR compare
DDA3937_RS08475 -0.9 -3.0 molybdopterin molybdotransferase MoeA compare
DDA3937_RS08400 -0.9 -1.2 H-NS histone family protein compare
DDA3937_RS23460 -0.9 -1.8 hypothetical protein compare
DDA3937_RS13110 -0.9 -3.7 beta-ketoacyl-ACP synthase II compare
DDA3937_RS23335 -0.9 -2.1 leu operon leader peptide compare
DDA3937_RS14700 -0.9 -6.8 TonB-dependent siderophore receptor compare
DDA3937_RS16105 -0.9 -2.9 polyphenol oxidase compare
DDA3937_RS10485 -0.9 -4.7 anthranilate synthase component 1 compare
DDA3937_RS16970 -0.9 -1.9 7-carboxy-7-deazaguanine synthase QueE compare
DDA3937_RS02160 -0.9 -1.2 transketolase compare
DDA3937_RS11275 -0.9 -5.6 TerC family protein compare
DDA3937_RS00345 -0.9 -3.5 inorganic phosphate transporter PitA compare
DDA3937_RS14655 -0.9 -4.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS15485 -0.9 -2.4 nucleoside-diphosphate kinase compare
DDA3937_RS10435 -0.9 -1.0 septation protein A compare
DDA3937_RS18975 -0.9 -3.8 fumarate reductase subunit FrdC compare
DDA3937_RS01410 -0.9 -2.4 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS21605 -0.9 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS04970 -0.9 -1.0 prepilin peptidase-dependent protein compare
DDA3937_RS00910 -0.8 -4.6 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS22240 -0.8 -2.2 type II toxin-antitoxin system RelE/ParE family toxin compare
DDA3937_RS18890 -0.8 -1.7 hypothetical protein compare
DDA3937_RS19395 -0.8 -2.6 peptidylprolyl isomerase compare
DDA3937_RS04820 -0.8 -1.9 integrase compare
DDA3937_RS16470 -0.8 -1.4 hypothetical protein compare
DDA3937_RS08240 -0.8 -2.4 acetyl-CoA carboxylase compare
DDA3937_RS23495 -0.8 -2.0 hypothetical protein compare
DDA3937_RS02585 -0.8 -3.2 oligosaccharide flippase family protein compare
DDA3937_RS13525 -0.8 -4.6 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS21810 -0.8 -2.1 DUF1328 domain-containing protein compare
DDA3937_RS12900 -0.8 -6.6 porin compare
DDA3937_RS08815 -0.8 -1.1 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS01870 -0.8 -2.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS14380 -0.8 -1.1 acetate kinase compare
DDA3937_RS09550 -0.8 -1.7 cold shock-like protein CspD compare
DDA3937_RS05895 -0.8 -2.8 transcriptional regulator RcsB compare
DDA3937_RS03285 -0.8 -1.5 protein YgfX compare
DDA3937_RS10125 -0.8 -2.6 pyruvate kinase compare
DDA3937_RS12610 -0.8 -2.6 Grx4 family monothiol glutaredoxin compare
DDA3937_RS00580 -0.8 -4.8 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS16560 -0.8 -3.3 xanthine phosphoribosyltransferase compare
DDA3937_RS17015 -0.8 -6.7 GTP diphosphokinase compare
DDA3937_RS06145 -0.8 -1.0 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS14630 -0.8 -2.0 tRNA-Arg compare
DDA3937_RS06695 -0.8 -2.9 dCTP deaminase compare
DDA3937_RS00555 -0.8 -3.9 dicarboxylate/amino acid:cation symporter compare
DDA3937_RS14915 -0.8 -2.0 glycosyl hydrolase 53 family protein compare
DDA3937_RS06305 -0.8 -3.4 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS16610 -0.8 -2.5 acireductone dioxygenase compare
DDA3937_RS20305 -0.8 -2.7 Sec-independent protein translocase subunit TatC compare
DDA3937_RS13500 -0.8 -2.2 flagellar protein FlhE compare
DDA3937_RS13245 -0.7 -1.5 macrodomain Ter protein MatP compare
DDA3937_RS16110 -0.7 -5.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS05465 -0.7 -2.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
DDA3937_RS20155 -0.7 -5.0 dihydroxy-acid dehydratase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Norland across organisms