Experiment setATCH153 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS03285 -5.4 -2.6 protein YgfX compare
DDA3937_RS18130 -3.9 -4.0 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS18585 -3.7 -1.8 adenylosuccinate synthase compare
DDA3937_RS10140 -3.4 -7.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS19615 -3.3 -5.1 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS21095 -3.2 -1.1 DUF1471 domain-containing protein compare
DDA3937_RS10470 -3.1 -9.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS06075 -3.0 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS10465 -3.0 -9.4 tryptophan synthase subunit beta compare
DDA3937_RS17830 -3.0 -2.3 DeoR/GlpR transcriptional regulator compare
DDA3937_RS04140 -3.0 -1.7 hypothetical protein compare
DDA3937_RS19510 -2.9 -2.5 peptidylprolyl isomerase A compare
DDA3937_RS00640 -2.9 -2.6 cell division ATP-binding protein FtsE compare
DDA3937_RS18125 -2.9 -12.0 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18120 -2.9 -9.1 3-isopropylmalate dehydrogenase compare
DDA3937_RS10475 -2.8 -9.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS04125 -2.7 -6.7 acetyltransferase compare
DDA3937_RS18405 -2.7 -12.6 threonine synthase compare
DDA3937_RS10485 -2.7 -11.0 anthranilate synthase component 1 compare
DDA3937_RS10540 -2.7 -1.9 HTH-type transcriptional regulator CysB compare
DDA3937_RS10555 -2.5 -3.1 electron transport complex subunit RsxG compare
DDA3937_RS06295 -2.5 -11.7 asparagine synthase B compare
DDA3937_RS11335 -2.5 -5.3 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS10985 -2.5 -3.5 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS10460 -2.4 -7.0 tryptophan synthase subunit alpha compare
DDA3937_RS06615 -2.4 -15.6 UDP-glucose 4-epimerase GalE compare
DDA3937_RS02425 -2.4 -8.4 phosphoserine phosphatase compare
DDA3937_RS11715 -2.3 -4.2 hypothetical protein compare
DDA3937_RS01000 -2.3 -3.4 glutamate racemase compare
DDA3937_RS14910 -2.3 -10.8 beta-galactosidase compare
DDA3937_RS06025 -2.2 -7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS01820 -2.2 -2.9 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS20455 -2.2 -3.2 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS14475 -2.2 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS10580 -2.2 -2.5 transcription modulator YdgT compare
DDA3937_RS14435 -2.2 -14.6 amidophosphoribosyltransferase compare
DDA3937_RS06770 -2.1 -2.0 oligosaccharide flippase family protein compare
DDA3937_RS06145 -2.1 -1.8 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS01740 -2.1 -4.7 outer membrane channel protein TolC compare
DDA3937_RS15110 -2.1 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS09670 -2.1 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS07175 -2.0 -2.2 LysR family transcriptional regulator compare
DDA3937_RS15655 -2.0 -11.7 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS10950 -2.0 -4.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS01530 -2.0 -4.1 RNA polymerase factor sigma-54 compare
DDA3937_RS17155 -1.9 -8.7 translocation/assembly module TamB compare
DDA3937_RS15420 -1.9 -6.0 IMP dehydrogenase compare
DDA3937_RS00135 -1.9 -1.4 glutamate--ammonia ligase compare
DDA3937_RS01600 -1.8 -8.9 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS18410 -1.8 -5.0 homoserine kinase compare
DDA3937_RS05150 -1.8 -4.7 sigma E protease regulator RseP compare
DDA3937_RS02965 -1.8 -1.8 transcriptional regulator ArgR compare
DDA3937_RS20970 -1.8 -4.0 mannitol operon repressor compare
DDA3937_RS01410 -1.7 -4.0 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS01220 -1.7 -8.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS12920 -1.7 -2.2 MBL fold metallo-hydrolase compare
DDA3937_RS22235 -1.7 -4.1 immunity 8 family protein compare
DDA3937_RS16130 -1.7 -8.6 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS20415 -1.7 -2.7 rhodanese-like domain-containing protein compare
DDA3937_RS16470 -1.7 -2.2 hypothetical protein compare
DDA3937_RS05895 -1.7 -4.8 transcriptional regulator RcsB compare
DDA3937_RS18415 -1.7 -8.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS21310 -1.7 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS00560 -1.6 -7.3 insulinase family protein compare
DDA3937_RS20155 -1.6 -7.1 dihydroxy-acid dehydratase compare
DDA3937_RS02915 -1.6 -5.0 TetR/AcrR family transcriptional regulator compare
DDA3937_RS06610 -1.6 -5.5 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS14385 -1.6 -6.2 phosphate acetyltransferase compare
DDA3937_RS18305 -1.6 -9.3 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS00785 -1.6 -2.0 cell-envelope stress modulator CpxP compare
DDA3937_RS18115 -1.6 -7.6 2-isopropylmalate synthase compare
DDA3937_RS19620 -1.6 -2.7 two-component system response regulator OmpR compare
DDA3937_RS05595 -1.6 -1.3 protoheme IX farnesyltransferase compare
DDA3937_RS23045 -1.6 -1.2 stress response protein AzuC compare
DDA3937_RS15765 -1.6 -9.9 RNA polymerase sigma factor RpoE compare
DDA3937_RS10435 -1.6 -1.6 septation protein A compare
DDA3937_RS00975 -1.5 -1.8 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS06745 -1.5 -5.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DDA3937_RS13170 -1.5 -6.4 dihydroorotase compare
DDA3937_RS16935 -1.5 -2.5 phosphoadenylyl-sulfate reductase compare
DDA3937_RS23460 -1.5 -1.7 hypothetical protein compare
DDA3937_RS00600 -1.5 -1.8 DcrB family lipoprotein compare
DDA3937_RS01215 -1.5 -4.9 phosphoribosylamine--glycine ligase compare
DDA3937_RS11035 -1.5 -3.6 redox-regulated ATPase YchF compare
DDA3937_RS06605 -1.5 -6.3 galactokinase compare
DDA3937_RS11180 -1.5 -3.1 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS18275 -1.5 -6.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS17425 -1.5 -6.0 diaminopimelate decarboxylase compare
DDA3937_RS06350 -1.4 -3.2 replication initiation negative regulator SeqA compare
DDA3937_RS17515 -1.4 -1.5 DUF1471 domain-containing protein compare
DDA3937_RS15780 -1.4 -5.6 ATP-dependent RNA helicase SrmB compare
DDA3937_RS14380 -1.4 -2.5 acetate kinase compare
DDA3937_RS13110 -1.4 -4.9 beta-ketoacyl-ACP synthase II compare
DDA3937_RS14695 -1.4 -5.5 enterochelin esterase compare
DDA3937_RS03420 -1.4 -3.0 sugar transferase compare
DDA3937_RS18480 -1.4 -3.0 phosphoglycerate dehydrogenase compare
DDA3937_RS19880 -1.4 -4.3 DNA helicase II compare
DDA3937_RS05645 -1.4 -7.9 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS04945 -1.4 -5.7 RNA pyrophosphohydrolase compare
DDA3937_RS20150 -1.3 -6.5 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS13525 -1.3 -6.7 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS10275 -1.3 -3.2 DUF1315 family protein compare
DDA3937_RS09070 -1.3 -2.1 hypothetical protein compare
DDA3937_RS09195 -1.3 -2.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS17835 -1.3 -4.6 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS14915 -1.3 -3.7 glycosyl hydrolase 53 family protein compare
DDA3937_RS12350 -1.3 -1.7 thiol peroxidase compare
DDA3937_RS21375 -1.3 -3.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS20305 -1.3 -4.6 Sec-independent protein translocase subunit TatC compare
DDA3937_RS05560 -1.3 -1.8 YajQ family cyclic di-GMP-binding protein compare
DDA3937_RS05640 -1.3 -5.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS15910 -1.3 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS01225 -1.3 -1.4 16S ribosomal RNA compare
DDA3937_RS12855 -1.3 -3.2 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS12010 -1.3 -1.5 hypothetical protein compare
DDA3937_RS13205 -1.3 -3.3 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS19930 -1.2 -2.7 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS00420 -1.2 -4.9 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS15530 -1.2 -1.2 co-chaperone HscB compare
DDA3937_RS01870 -1.2 -4.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS09655 -1.2 -8.3 formate C-acetyltransferase compare
DDA3937_RS06805 -1.2 -7.5 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS14095 -1.2 -1.1 ABC transporter ATP-binding protein compare
DDA3937_RS19670 -1.2 -2.5 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS18310 -1.2 -5.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS13345 -1.2 -2.9 flagellar filament capping protein FliD compare
DDA3937_RS19015 -1.2 -5.3 glucose-6-phosphate isomerase compare
DDA3937_RS16685 -1.2 -1.6 oxalurate catabolism protein HpxZ compare
DDA3937_RS22035 -1.2 -1.6 immunity protein RhsIC compare
DDA3937_RS04490 -1.2 -2.2 cysteine synthase A compare
DDA3937_RS05615 -1.2 -1.3 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS16110 -1.2 -6.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS01550 -1.1 -4.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS12525 -1.1 -3.0 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS10325 -1.1 -5.2 formyltetrahydrofolate deformylase compare
DDA3937_RS23020 -1.1 -0.9 hypothetical protein compare
DDA3937_RS17180 -1.1 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS15155 -1.1 -4.3 exopolyphosphatase compare
DDA3937_RS17160 -1.1 -5.4 outer membrane protein assembly factor compare
DDA3937_RS15745 -1.1 -3.7 elongation factor 4 compare
DDA3937_RS09725 -1.1 -2.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS14670 -1.1 -2.9 iron-enterobactin ABC transporter permease compare
DDA3937_RS12780 -1.1 -2.0 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS19650 -1.1 -2.6 DNA utilization protein GntX compare
DDA3937_RS08735 -1.1 -4.6 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS11700 -1.1 -1.5 type III secretion system export apparatus subunit SctS compare
DDA3937_RS06305 -1.1 -5.3 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS05200 -1.1 -2.8 VOC family protein compare
DDA3937_RS06100 -1.1 -1.5 M15 family metallopeptidase compare
DDA3937_RS06235 -1.1 -3.7 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS08145 -1.1 -2.6 metal ABC transporter permease compare
DDA3937_RS13530 -1.1 -5.3 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS09120 -1.1 -1.0 YejL family protein compare
DDA3937_RS15545 -1.1 -0.9 cysteine desulfurase compare
DDA3937_RS18815 -1.1 -2.3 flavodoxin compare
DDA3937_RS06695 -1.1 -3.8 dCTP deaminase compare
DDA3937_RS11275 -1.1 -4.7 TerC family protein compare
DDA3937_RS15485 -1.1 -3.4 nucleoside-diphosphate kinase compare
DDA3937_RS00580 -1.1 -5.9 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS06755 -1.1 -2.6 glycosyltransferase family 2 protein compare
DDA3937_RS09715 -1.1 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS06685 -1.0 -1.7 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS14700 -1.0 -7.8 TonB-dependent siderophore receptor compare
DDA3937_RS16095 -1.0 -2.0 16S ribosomal RNA compare
DDA3937_RS14440 -1.0 -4.3 colicin V production protein compare
DDA3937_RS18980 -1.0 -2.6 fumarate reductase subunit FrdD compare
DDA3937_RS07235 -1.0 -1.4 response regulator transcription factor compare
DDA3937_RS14205 -1.0 -4.0 hydrogenase expression/formation protein HypE compare
DDA3937_RS00100 -1.0 -6.6 thiol:disulfide interchange protein DsbA compare
DDA3937_RS00345 -1.0 -4.8 inorganic phosphate transporter PitA compare
DDA3937_RS00645 -1.0 -3.5 cell division protein FtsX compare
DDA3937_RS00900 -1.0 -2.3 cell division protein ZapB compare
DDA3937_RS13540 -1.0 -4.4 chemotaxis protein CheW compare
DDA3937_RS21965 -1.0 -0.9 helix-turn-helix domain-containing protein compare
DDA3937_RS09650 -1.0 -4.5 pyruvate formate lyase 1-activating protein compare
DDA3937_RS13545 -1.0 -6.1 chemotaxis protein CheA compare
DDA3937_RS04480 -1.0 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS12800 -1.0 -2.5 AI-2E family transporter YdiK compare
DDA3937_RS02765 -1.0 -5.2 zinc uptake transcriptional repressor Zur compare
DDA3937_RS03355 -1.0 -1.3 tRNA-Gly compare
DDA3937_RS11615 -1.0 -1.8 type III secretion system stator protein SctL compare
DDA3937_RS13515 -1.0 -4.3 protein phosphatase CheZ compare
DDA3937_RS02160 -1.0 -1.1 transketolase compare
DDA3937_RS00140 -1.0 -3.6 ribosome-dependent GTPase TypA compare
DDA3937_RS23365 -1.0 -1.6 hypothetical protein compare
DDA3937_RS02210 -0.9 -3.8 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS12805 -0.9 -5.2 phosphoenolpyruvate synthase compare
DDA3937_RS17250 -0.9 -1.2 hypothetical protein compare
DDA3937_RS13520 -0.9 -4.9 chemotaxis response regulator CheY compare
DDA3937_RS12900 -0.9 -7.4 porin compare
DDA3937_RS12440 -0.9 -3.5 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS00450 -0.9 -5.3 two-component system response regulator DcuR compare
DDA3937_RS10370 -0.9 -2.7 YchE family NAAT transporter compare
DDA3937_RS05470 -0.9 -2.0 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS05500 -0.9 -3.6 transcriptional regulator NrdR compare
DDA3937_RS11445 -0.9 -4.3 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS20130 -0.9 -2.8 ketol-acid reductoisomerase compare
DDA3937_RS14360 -0.9 -1.1 sugar phosphatase compare
DDA3937_RS20535 -0.9 -4.0 orotate phosphoribosyltransferase compare
DDA3937_RS15150 -0.9 -4.7 polyphosphate kinase 1 compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms