Experiment setATCH152 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -4.9 -4.8 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS10140 -4.4 -6.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS06755 -3.8 -8.1 glycosyltransferase family 2 protein compare
DDA3937_RS06075 -3.6 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS14910 -3.5 -14.9 beta-galactosidase compare
DDA3937_RS19510 -3.3 -4.7 peptidylprolyl isomerase A compare
DDA3937_RS18125 -3.3 -13.2 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS17830 -3.2 -2.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS10470 -3.2 -10.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS18120 -3.2 -12.4 3-isopropylmalate dehydrogenase compare
DDA3937_RS20455 -3.2 -4.3 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS10465 -3.0 -9.1 tryptophan synthase subunit beta compare
DDA3937_RS09585 -2.9 -2.6 thioredoxin-disulfide reductase compare
DDA3937_RS15420 -2.9 -8.0 IMP dehydrogenase compare
DDA3937_RS10485 -2.9 -10.7 anthranilate synthase component 1 compare
DDA3937_RS05595 -2.8 -2.3 protoheme IX farnesyltransferase compare
DDA3937_RS18480 -2.8 -9.0 phosphoglycerate dehydrogenase compare
DDA3937_RS18585 -2.7 -2.3 adenylosuccinate synthase compare
DDA3937_RS02425 -2.5 -9.1 phosphoserine phosphatase compare
DDA3937_RS11335 -2.5 -8.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS10480 -2.5 -3.3 glutamine amidotransferase compare
DDA3937_RS10460 -2.4 -6.9 tryptophan synthase subunit alpha compare
DDA3937_RS19615 -2.4 -3.9 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS16935 -2.4 -4.1 phosphoadenylyl-sulfate reductase compare
DDA3937_RS10950 -2.3 -8.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS10475 -2.3 -8.3 anthranilate phosphoribosyltransferase compare
DDA3937_RS04125 -2.3 -4.9 acetyltransferase compare
DDA3937_RS06615 -2.3 -14.2 UDP-glucose 4-epimerase GalE compare
DDA3937_RS10985 -2.3 -3.8 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS06295 -2.2 -10.4 asparagine synthase B compare
DDA3937_RS15655 -2.1 -14.1 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS18405 -2.1 -8.3 threonine synthase compare
DDA3937_RS01820 -2.1 -5.0 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS06025 -2.0 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS04960 -2.0 -3.0 thymidylate synthase compare
DDA3937_RS16685 -1.9 -2.5 oxalurate catabolism protein HpxZ compare
DDA3937_RS05150 -1.9 -6.6 sigma E protease regulator RseP compare
DDA3937_RS11035 -1.9 -4.2 redox-regulated ATPase YchF compare
DDA3937_RS05105 -1.8 -4.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS03420 -1.8 -4.5 sugar transferase compare
DDA3937_RS10325 -1.8 -9.3 formyltetrahydrofolate deformylase compare
DDA3937_RS17160 -1.8 -9.2 outer membrane protein assembly factor compare
DDA3937_RS09345 -1.8 -1.4 IS200/IS605 family transposase compare
DDA3937_RS01600 -1.7 -10.5 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS16795 -1.7 -2.2 YfiM family lipoprotein compare
DDA3937_RS11715 -1.7 -3.4 hypothetical protein compare
DDA3937_RS14385 -1.7 -6.0 phosphate acetyltransferase compare
DDA3937_RS18305 -1.7 -10.0 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS06610 -1.7 -5.9 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS17155 -1.7 -8.4 translocation/assembly module TamB compare
DDA3937_RS14380 -1.7 -3.1 acetate kinase compare
DDA3937_RS18115 -1.7 -6.6 2-isopropylmalate synthase compare
DDA3937_RS06350 -1.7 -3.6 replication initiation negative regulator SeqA compare
DDA3937_RS00125 -1.7 -2.6 nitrogen regulation protein NR(I) compare
DDA3937_RS04895 -1.7 -3.6 oxidative damage protection protein compare
DDA3937_RS17425 -1.6 -7.1 diaminopimelate decarboxylase compare
DDA3937_RS14435 -1.6 -11.8 amidophosphoribosyltransferase compare
DDA3937_RS09650 -1.6 -9.1 pyruvate formate lyase 1-activating protein compare
DDA3937_RS18310 -1.6 -7.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS15765 -1.6 -11.4 RNA polymerase sigma factor RpoE compare
DDA3937_RS19015 -1.6 -7.1 glucose-6-phosphate isomerase compare
DDA3937_RS20155 -1.6 -6.8 dihydroxy-acid dehydratase compare
DDA3937_RS20470 -1.6 -7.8 glycosyltransferase family 9 protein compare
DDA3937_RS15815 -1.6 -1.5 tRNA-Val compare
DDA3937_RS17835 -1.6 -5.4 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS16860 -1.5 -4.6 Rcs stress response system protein RcsF compare
DDA3937_RS01215 -1.5 -7.0 phosphoribosylamine--glycine ligase compare
DDA3937_RS00900 -1.5 -4.7 cell division protein ZapB compare
DDA3937_RS14360 -1.5 -2.9 sugar phosphatase compare
DDA3937_RS19670 -1.5 -2.9 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS00580 -1.5 -8.4 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS14465 -1.5 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS06765 -1.5 -1.8 DUF616 domain-containing protein compare
DDA3937_RS20130 -1.5 -5.7 ketol-acid reductoisomerase compare
DDA3937_RS04820 -1.5 -2.9 integrase compare
DDA3937_RS00910 -1.5 -9.7 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS00640 -1.5 -1.9 cell division ATP-binding protein FtsE compare
DDA3937_RS10555 -1.5 -2.6 electron transport complex subunit RsxG compare
DDA3937_RS12525 -1.4 -4.2 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS01740 -1.4 -2.9 outer membrane channel protein TolC compare
DDA3937_RS01220 -1.4 -7.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS18080 -1.4 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS09655 -1.4 -10.0 formate C-acetyltransferase compare
DDA3937_RS15110 -1.4 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS05640 -1.4 -6.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS18410 -1.4 -3.7 homoserine kinase compare
DDA3937_RS00600 -1.4 -2.0 DcrB family lipoprotein compare
DDA3937_RS09775 -1.3 -1.3 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS13335 -1.3 -1.4 IS200/IS605 family transposase compare
DDA3937_RS09575 -1.3 -1.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS05645 -1.3 -9.2 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS19910 -1.3 -2.2 iron donor protein CyaY compare
DDA3937_RS14475 -1.3 -4.7 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS14095 -1.3 -1.4 ABC transporter ATP-binding protein compare
DDA3937_RS09120 -1.3 -1.0 YejL family protein compare
DDA3937_RS13110 -1.3 -5.6 beta-ketoacyl-ACP synthase II compare
DDA3937_RS04480 -1.3 -5.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS16110 -1.3 -8.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS09195 -1.3 -2.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS12680 -1.3 -3.2 type II secretion system protein compare
DDA3937_RS10435 -1.3 -1.7 septation protein A compare
DDA3937_RS09720 -1.3 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS09670 -1.3 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS13220 -1.2 -3.4 glucan biosynthesis protein G compare
DDA3937_RS12610 -1.2 -3.2 Grx4 family monothiol glutaredoxin compare
DDA3937_RS10315 -1.2 -3.5 trimeric intracellular cation channel family protein compare
DDA3937_RS03285 -1.2 -1.9 protein YgfX compare
DDA3937_RS15150 -1.2 -5.7 polyphosphate kinase 1 compare
DDA3937_RS18660 -1.2 -9.5 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS01550 -1.2 -4.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS10540 -1.2 -1.6 HTH-type transcriptional regulator CysB compare
DDA3937_RS16555 -1.2 -7.0 esterase FrsA compare
DDA3937_RS06805 -1.2 -8.3 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS14675 -1.2 -2.1 ABC transporter ATP-binding protein compare
DDA3937_RS06605 -1.2 -6.1 galactokinase compare
DDA3937_RS03300 -1.2 -1.5 site-specific tyrosine recombinase XerD compare
DDA3937_RS01590 -1.2 -3.8 BolA family iron metabolism protein IbaG compare
DDA3937_RS21310 -1.2 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS18415 -1.2 -5.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS21230 -1.2 -5.1 GntR family transcriptional regulator compare
DDA3937_RS18690 -1.2 -3.1 glycosyltransferase compare
DDA3937_RS11330 -1.2 -5.1 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS13920 -1.1 -1.5 CcdB family protein compare
DDA3937_RS00140 -1.1 -4.8 ribosome-dependent GTPase TypA compare
DDA3937_RS13530 -1.1 -5.2 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS21375 -1.1 -2.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS15720 -1.1 -4.2 pyridoxine 5'-phosphate synthase compare
DDA3937_RS23190 -1.1 -1.9 hypothetical protein compare
DDA3937_RS14440 -1.1 -4.7 colicin V production protein compare
DDA3937_RS22235 -1.1 -3.4 immunity 8 family protein compare
DDA3937_RS09590 -1.1 -2.9 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS04070 -1.1 -1.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS17010 -1.1 -4.1 nucleoside triphosphate pyrophosphohydrolase compare
DDA3937_RS09710 -1.1 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS05810 -1.1 -5.3 Kef family K(+) transporter compare
DDA3937_RS12855 -1.1 -3.3 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS16095 -1.1 -2.9 16S ribosomal RNA compare
DDA3937_RS19880 -1.1 -4.1 DNA helicase II compare
DDA3937_RS17135 -1.1 -2.1 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS00645 -1.1 -3.8 cell division protein FtsX compare
DDA3937_RS12590 -1.1 -4.5 glycine zipper 2TM domain-containing protein compare
DDA3937_RS13930 -1.1 -3.0 transposase compare
DDA3937_RS12390 -1.0 -3.7 transcriptional regulator TyrR compare
DDA3937_RS13540 -1.0 -5.7 chemotaxis protein CheW compare
DDA3937_RS04195 -1.0 -4.0 GPO family capsid scaffolding protein compare
DDA3937_RS02915 -1.0 -3.0 TetR/AcrR family transcriptional regulator compare
DDA3937_RS19395 -1.0 -4.9 peptidylprolyl isomerase compare
DDA3937_RS01875 -1.0 -8.2 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS13520 -1.0 -5.4 chemotaxis response regulator CheY compare
DDA3937_RS08400 -1.0 -1.9 H-NS histone family protein compare
DDA3937_RS16245 -1.0 -1.9 recombinase RecA compare
DDA3937_RS02725 -1.0 -1.4 FxsA family protein compare
DDA3937_RS15455 -1.0 -1.6 YfgM family protein compare
DDA3937_RS18655 -1.0 -5.9 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS22035 -1.0 -1.3 immunity protein RhsIC compare
DDA3937_RS06760 -1.0 -2.5 EpsG family protein compare
DDA3937_RS12900 -1.0 -8.3 porin compare
DDA3937_RS18085 -1.0 -2.7 division/cell wall cluster transcriptional repressor MraZ compare
DDA3937_RS13345 -1.0 -5.1 flagellar filament capping protein FliD compare
DDA3937_RS14915 -0.9 -2.3 glycosyl hydrolase 53 family protein compare
DDA3937_RS10445 -0.9 -2.0 hypothetical protein compare
DDA3937_RS06070 -0.9 -3.7 outer membrane protein assembly factor BamC compare
DDA3937_RS02535 -0.9 -2.1 hydroxyisourate hydrolase compare
DDA3937_RS00345 -0.9 -4.7 inorganic phosphate transporter PitA compare
DDA3937_RS04180 -0.9 -2.8 ogr/Delta-like zinc finger family protein compare
DDA3937_RS18680 -0.9 -2.7 GDP-L-fucose synthase compare
DDA3937_RS10580 -0.9 -1.7 transcription modulator YdgT compare
DDA3937_RS17250 -0.9 -1.3 hypothetical protein compare
DDA3937_RS15485 -0.9 -3.0 nucleoside-diphosphate kinase compare
DDA3937_RS18425 -0.9 -6.0 two-component system response regulator ArcA compare
DDA3937_RS01530 -0.9 -2.0 RNA polymerase factor sigma-54 compare
DDA3937_RS02585 -0.9 -4.5 oligosaccharide flippase family protein compare
DDA3937_RS13245 -0.9 -2.0 macrodomain Ter protein MatP compare
DDA3937_RS18430 -0.9 -3.0 protein CreA compare
DDA3937_RS06155 -0.9 -5.7 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS10135 -0.9 -4.3 glucose-6-phosphate dehydrogenase compare
DDA3937_RS06735 -0.9 -4.9 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS03570 -0.9 -3.7 L,D-transpeptidase family protein compare
DDA3937_RS16085 -0.9 -1.7 23S ribosomal RNA compare
DDA3937_RS14225 -0.9 -1.8 hydrogenase maturation nickel metallochaperone HypA compare
DDA3937_RS09730 -0.9 -4.5 histidinol-phosphate transaminase compare
DDA3937_RS20415 -0.9 -1.9 rhodanese-like domain-containing protein compare
DDA3937_RS16915 -0.9 -2.8 adenylyl-sulfate kinase compare
DDA3937_RS01925 -0.9 -4.4 aspartate carbamoyltransferase compare
DDA3937_RS21605 -0.9 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS01865 -0.9 -2.7 YhbP family protein compare
DDA3937_RS06270 -0.9 -1.6 tRNA-Met compare
DDA3937_RS02800 -0.9 -2.6 DUF883 domain-containing protein compare
DDA3937_RS00950 -0.9 -4.9 cystathionine gamma-synthase compare
DDA3937_RS13965 -0.9 -1.9 CcdB family protein compare
DDA3937_RS13545 -0.9 -6.4 chemotaxis protein CheA compare
DDA3937_RS20475 -0.9 -1.3 glycosyltransferase family 4 protein compare
DDA3937_RS13580 -0.9 -3.0 protein DsrB compare
DDA3937_RS20535 -0.8 -3.8 orotate phosphoribosyltransferase compare
DDA3937_RS17180 -0.8 -3.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS00135 -0.8 -0.9 glutamate--ammonia ligase compare
DDA3937_RS01870 -0.8 -2.8 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS14695 -0.8 -4.2 enterochelin esterase compare
DDA3937_RS05650 -0.8 -3.0 endopeptidase La compare
DDA3937_RS19915 -0.8 -0.6 class I adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms