Experiment setATCH151 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS01820 -2.7 -3.8 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS10140 -2.6 -6.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS10985 -2.5 -4.2 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS05160 -2.4 -2.7 molecular chaperone Skp compare
DDA3937_RS02425 -2.4 -7.9 phosphoserine phosphatase compare
DDA3937_RS04125 -2.2 -6.2 acetyltransferase compare
DDA3937_RS12425 -2.2 -2.2 phage shock protein PspA compare
DDA3937_RS19620 -2.1 -4.0 two-component system response regulator OmpR compare
DDA3937_RS18125 -2.0 -9.5 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS03285 -2.0 -2.7 protein YgfX compare
DDA3937_RS06615 -2.0 -13.2 UDP-glucose 4-epimerase GalE compare
DDA3937_RS14910 -1.9 -9.5 beta-galactosidase compare
DDA3937_RS15420 -1.9 -6.2 IMP dehydrogenase compare
DDA3937_RS16935 -1.9 -3.3 phosphoadenylyl-sulfate reductase compare
DDA3937_RS06350 -1.9 -4.4 replication initiation negative regulator SeqA compare
DDA3937_RS09770 -1.8 -1.8 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS12920 -1.8 -2.6 MBL fold metallo-hydrolase compare
DDA3937_RS15655 -1.7 -12.8 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS17160 -1.7 -6.5 outer membrane protein assembly factor compare
DDA3937_RS12790 -1.7 -1.9 hotdog fold thioesterase compare
DDA3937_RS04960 -1.7 -2.6 thymidylate synthase compare
DDA3937_RS19615 -1.6 -3.2 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06270 -1.6 -2.0 tRNA-Met compare
DDA3937_RS07795 -1.6 -2.1 GNAT family N-acetyltransferase compare
DDA3937_RS14475 -1.6 -4.9 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS19510 -1.6 -2.7 peptidylprolyl isomerase A compare
DDA3937_RS18080 -1.6 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS09575 -1.6 -1.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS12800 -1.5 -3.7 AI-2E family transporter YdiK compare
DDA3937_RS04895 -1.5 -3.2 oxidative damage protection protein compare
DDA3937_RS13220 -1.5 -4.0 glucan biosynthesis protein G compare
DDA3937_RS09580 -1.5 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS18405 -1.5 -6.8 threonine synthase compare
DDA3937_RS12855 -1.5 -4.9 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS02915 -1.5 -3.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS10315 -1.5 -3.2 trimeric intracellular cation channel family protein compare
DDA3937_RS13170 -1.5 -4.8 dihydroorotase compare
DDA3937_RS09370 -1.4 -1.4 GTP cyclohydrolase I FolE compare
DDA3937_RS13110 -1.4 -5.8 beta-ketoacyl-ACP synthase II compare
DDA3937_RS10460 -1.4 -7.1 tryptophan synthase subunit alpha compare
DDA3937_RS22235 -1.4 -4.1 immunity 8 family protein compare
DDA3937_RS21795 -1.4 -2.6 CopG family transcriptional regulator compare
DDA3937_RS12610 -1.4 -3.9 Grx4 family monothiol glutaredoxin compare
DDA3937_RS18310 -1.4 -8.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18120 -1.4 -4.4 3-isopropylmalate dehydrogenase compare
DDA3937_RS12010 -1.4 -1.6 hypothetical protein compare
DDA3937_RS12450 -1.4 -2.8 peptide ABC transporter permease SapC compare
DDA3937_RS00640 -1.4 -1.3 cell division ATP-binding protein FtsE compare
DDA3937_RS15815 -1.4 -1.1 tRNA-Val compare
DDA3937_RS05150 -1.4 -4.5 sigma E protease regulator RseP compare
DDA3937_RS10465 -1.3 -6.2 tryptophan synthase subunit beta compare
DDA3937_RS15765 -1.3 -9.3 RNA polymerase sigma factor RpoE compare
DDA3937_RS16595 -1.3 -2.0 acyl-CoA dehydrogenase FadE compare
DDA3937_RS14435 -1.3 -9.4 amidophosphoribosyltransferase compare
DDA3937_RS21965 -1.3 -1.1 helix-turn-helix domain-containing protein compare
DDA3937_RS17155 -1.3 -5.9 translocation/assembly module TamB compare
DDA3937_RS22560 -1.3 -1.6 membrane protein insertion efficiency factor YidD compare
DDA3937_RS14225 -1.3 -1.9 hydrogenase maturation nickel metallochaperone HypA compare
DDA3937_RS18480 -1.3 -3.1 phosphoglycerate dehydrogenase compare
DDA3937_RS06075 -1.3 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS01000 -1.3 -3.1 glutamate racemase compare
DDA3937_RS06295 -1.3 -7.5 asparagine synthase B compare
DDA3937_RS06765 -1.3 -2.0 DUF616 domain-containing protein compare
DDA3937_RS11715 -1.3 -2.5 hypothetical protein compare
DDA3937_RS01925 -1.3 -7.7 aspartate carbamoyltransferase compare
DDA3937_RS12525 -1.3 -3.8 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS01600 -1.3 -5.8 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS20415 -1.3 -2.7 rhodanese-like domain-containing protein compare
DDA3937_RS14695 -1.3 -5.8 enterochelin esterase compare
DDA3937_RS01215 -1.2 -6.8 phosphoribosylamine--glycine ligase compare
DDA3937_RS01740 -1.2 -2.9 outer membrane channel protein TolC compare
DDA3937_RS17830 -1.2 -1.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS15110 -1.2 -5.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS08240 -1.2 -2.1 acetyl-CoA carboxylase compare
DDA3937_RS15060 -1.2 -1.6 imidazolonepropionase compare
DDA3937_RS17835 -1.2 -4.2 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS00835 -1.2 -1.4 2TM domain-containing protein compare
DDA3937_RS04140 -1.2 -0.9 hypothetical protein compare
DDA3937_RS00900 -1.2 -3.7 cell division protein ZapB compare
DDA3937_RS10435 -1.2 -1.5 septation protein A compare
DDA3937_RS11335 -1.2 -3.3 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS08475 -1.2 -4.3 molybdopterin molybdotransferase MoeA compare
DDA3937_RS03420 -1.2 -2.3 sugar transferase compare
DDA3937_RS00645 -1.2 -5.3 cell division protein FtsX compare
DDA3937_RS20700 -1.2 -1.1 hypothetical protein compare
DDA3937_RS01550 -1.2 -4.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS06770 -1.2 -1.4 oligosaccharide flippase family protein compare
DDA3937_RS20535 -1.2 -6.7 orotate phosphoribosyltransferase compare
DDA3937_RS00600 -1.2 -1.4 DcrB family lipoprotein compare
DDA3937_RS06025 -1.2 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS06535 -1.1 -1.1 tRNA-Lys compare
DDA3937_RS09195 -1.1 -2.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS18410 -1.1 -4.4 homoserine kinase compare
DDA3937_RS09235 -1.1 -2.9 1-phosphofructokinase compare
DDA3937_RS10580 -1.1 -1.9 transcription modulator YdgT compare
DDA3937_RS02855 -1.1 -1.1 hypothetical protein compare
DDA3937_RS06610 -1.1 -4.8 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS22035 -1.1 -1.5 immunity protein RhsIC compare
DDA3937_RS14385 -1.1 -4.4 phosphate acetyltransferase compare
DDA3937_RS23450 -1.1 -2.1 CPBP family intramembrane metalloprotease compare
DDA3937_RS19000 -1.1 -1.4 EF-P beta-lysylation protein EpmB compare
DDA3937_RS06755 -1.1 -2.9 glycosyltransferase family 2 protein compare
DDA3937_RS20265 -1.1 -0.7 YeeE/YedE family protein compare
DDA3937_RS21310 -1.1 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS10950 -1.1 -4.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS18675 -1.1 -3.5 ABC transporter ATP-binding protein compare
DDA3937_RS06805 -1.1 -6.6 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS16840 -1.1 -1.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS07750 -1.0 -2.3 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS13240 -1.0 -2.6 GhoT/OrtT family toxin compare
DDA3937_RS10470 -1.0 -3.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS18670 -1.0 -2.9 ABC transporter permease compare
DDA3937_RS12280 -1.0 -0.9 YnbE family lipoprotein compare
DDA3937_RS00910 -1.0 -5.9 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS05500 -1.0 -4.0 transcriptional regulator NrdR compare
DDA3937_RS09550 -1.0 -2.0 cold shock-like protein CspD compare
DDA3937_RS14440 -1.0 -5.1 colicin V production protein compare
DDA3937_RS06235 -1.0 -4.2 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS10560 -1.0 -3.2 electron transport complex subunit RsxD compare
DDA3937_RS18305 -1.0 -5.6 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS19915 -1.0 -0.9 class I adenylate cyclase compare
DDA3937_RS00140 -1.0 -4.5 ribosome-dependent GTPase TypA compare
DDA3937_RS01870 -1.0 -3.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS13215 -1.0 -3.0 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS17150 -1.0 -1.4 gamma-glutamylcyclotransferase compare
DDA3937_RS01810 -1.0 -4.0 DedA family protein compare
DDA3937_RS04315 -0.9 -1.9 RnfH family protein compare
DDA3937_RS01220 -0.9 -5.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS15910 -0.9 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS19785 -0.9 -1.4 gluconate operon transcriptional repressor GntR compare
DDA3937_RS00580 -0.9 -5.0 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS23190 -0.9 -0.8 hypothetical protein compare
DDA3937_RS14465 -0.9 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS19015 -0.9 -3.8 glucose-6-phosphate isomerase compare
DDA3937_RS10575 -0.9 -3.0 electron transport complex subunit RsxA compare
DDA3937_RS13175 -0.9 -1.6 DNA damage-inducible protein I compare
DDA3937_RS10555 -0.9 -1.7 electron transport complex subunit RsxG compare
DDA3937_RS22485 -0.9 -2.1 hypothetical protein compare
DDA3937_RS17665 -0.9 -2.5 PAAR domain-containing protein compare
DDA3937_RS13205 -0.9 -2.0 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS11365 -0.9 -1.6 oligogalacturonate-specific porin KdgM compare
DDA3937_RS17010 -0.9 -2.6 nucleoside triphosphate pyrophosphohydrolase compare
DDA3937_RS03280 -0.9 -1.4 FAD assembly factor SdhE compare
DDA3937_RS16860 -0.9 -2.6 Rcs stress response system protein RcsF compare
DDA3937_RS15485 -0.9 -3.3 nucleoside-diphosphate kinase compare
DDA3937_RS11480 -0.9 -1.9 NUDIX hydrolase compare
DDA3937_RS04945 -0.9 -4.4 RNA pyrophosphohydrolase compare
DDA3937_RS02050 -0.9 -1.4 helix-turn-helix domain-containing protein compare
DDA3937_RS18115 -0.9 -4.9 2-isopropylmalate synthase compare
DDA3937_RS18275 -0.9 -4.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS14665 -0.9 -3.6 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS12900 -0.8 -7.0 porin compare
DDA3937_RS23335 -0.8 -1.7 leu operon leader peptide compare
DDA3937_RS05065 -0.8 -2.7 flap endonuclease Xni compare
DDA3937_RS14655 -0.8 -4.0 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS19880 -0.8 -2.6 DNA helicase II compare
DDA3937_RS18005 -0.8 -1.6 secA regulator SecM compare
DDA3937_RS16110 -0.8 -5.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS11950 -0.8 -2.4 two-component system response regulator NarL compare
DDA3937_RS05105 -0.8 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS04040 -0.8 -3.5 type II toxin-antitoxin system RelE/ParE family toxin compare
DDA3937_RS14700 -0.8 -6.3 TonB-dependent siderophore receptor compare
DDA3937_RS10675 -0.8 -0.9 ROK family transcriptional regulator compare
DDA3937_RS12535 -0.8 -1.9 LapA family protein compare
DDA3937_RS04400 -0.8 -1.9 glycosyltransferase compare
DDA3937_RS10065 -0.8 -2.3 YebC/PmpR family DNA-binding transcriptional regulator compare
DDA3937_RS13580 -0.8 -2.4 protein DsrB compare
DDA3937_RS19440 -0.8 -1.3 OsmC family protein compare
DDA3937_RS05240 -0.8 -2.3 NAD(P)-binding domain-containing protein compare
DDA3937_RS02210 -0.8 -3.4 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS17180 -0.8 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS10485 -0.8 -4.1 anthranilate synthase component 1 compare
DDA3937_RS11590 -0.8 -2.0 hypothetical protein compare
DDA3937_RS06475 -0.8 -1.1 succinate--CoA ligase subunit alpha compare
DDA3937_RS06685 -0.8 -2.5 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS12660 -0.8 -1.7 type II secretion system protein M compare
DDA3937_RS06040 -0.8 -0.9 DnaA inactivator Hda compare
DDA3937_RS00865 -0.8 -0.6 triose-phosphate isomerase compare
DDA3937_RS05670 -0.8 -1.8 7-cyano-7-deazaguanine synthase QueC compare
DDA3937_RS19780 -0.8 -1.0 gluconokinase compare
DDA3937_RS08135 -0.8 -3.6 LysR family transcriptional regulator compare
DDA3937_RS05050 -0.8 -2.2 transcriptional regulator GcvA compare
DDA3937_RS12575 -0.8 -0.9 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS06210 -0.8 -1.1 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS02765 -0.8 -4.3 zinc uptake transcriptional repressor Zur compare
DDA3937_RS01875 -0.8 -5.4 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS12430 -0.7 -2.2 phage shock protein operon transcriptional activator compare
DDA3937_RS15030 -0.7 -2.2 ATP-binding cassette domain-containing protein compare
DDA3937_RS02280 -0.7 -1.4 chorismate mutase compare
DDA3937_RS02585 -0.7 -2.6 oligosaccharide flippase family protein compare
DDA3937_RS19340 -0.7 -1.7 transcriptional regulator compare
DDA3937_RS15545 -0.7 -0.6 cysteine desulfurase compare
DDA3937_RS20305 -0.7 -3.1 Sec-independent protein translocase subunit TatC compare
DDA3937_RS15150 -0.7 -3.9 polyphosphate kinase 1 compare
DDA3937_RS06900 -0.7 -1.6 hypothetical protein compare
DDA3937_RS00925 -0.7 -3.0 cell division protein FtsN compare
DDA3937_RS16195 -0.7 -1.5 glutamate--cysteine ligase compare
DDA3937_RS14920 -0.7 -2.5 sugar ABC transporter permease compare
DDA3937_RS23305 -0.7 -1.3 hypothetical protein compare
DDA3937_RS00920 -0.7 -1.9 ATP-dependent protease subunit HslV compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms