Experiment setATCH151 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS21960 +4.4 7.3 helix-turn-helix transcriptional regulator compare
DDA3937_RS02685 +3.6 3.6 hypothetical protein compare
DDA3937_RS10980 +2.2 8.6 tetratricopeptide repeat-containing protein compare
DDA3937_RS15705 +2.0 11.0 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS04665 +2.0 7.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS02150 +1.9 3.2 AAA family ATPase compare
DDA3937_RS07930 +1.9 2.5 TonB family protein compare
DDA3937_RS15455 +1.8 1.2 YfgM family protein compare
DDA3937_RS10855 +1.8 1.8 hypothetical protein compare
DDA3937_RS00785 +1.6 1.1 cell-envelope stress modulator CpxP compare
DDA3937_RS04215 +1.5 2.8 phage tail protein compare
DDA3937_RS10060 +1.4 1.5 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS13560 +1.4 8.6 flagellar transcriptional regulator FlhC compare
DDA3937_RS22080 +1.4 1.0 transposase compare
DDA3937_RS18615 +1.4 1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS13490 +1.4 1.1 anti-sigma-28 factor FlgM compare
DDA3937_RS04405 +1.4 4.4 GNAT family N-acetyltransferase compare
DDA3937_RS02360 +1.4 2.5 ABC transporter permease compare
DDA3937_RS16490 +1.4 1.2 hypothetical protein compare
DDA3937_RS13555 +1.4 7.4 flagellar motor stator protein MotA compare
DDA3937_RS17825 +1.3 2.3 TIGR00730 family Rossman fold protein compare
DDA3937_RS13550 +1.3 6.9 flagellar motor protein MotB compare
DDA3937_RS08555 +1.3 2.8 DUF2474 domain-containing protein compare
DDA3937_RS04235 +1.3 5.0 phage holin family protein compare
DDA3937_RS12030 +1.3 2.3 hypothetical protein compare
DDA3937_RS11965 +1.3 6.1 carboxy terminal-processing peptidase compare
DDA3937_RS02455 +1.2 1.9 stress response protein compare
DDA3937_RS20470 +1.2 3.8 glycosyltransferase family 9 protein compare
DDA3937_RS23320 +1.2 1.7 hypothetical protein compare
DDA3937_RS21990 +1.2 2.4 hypothetical protein compare
DDA3937_RS13565 +1.2 6.3 flagellar transcriptional regulator FlhD compare
DDA3937_RS10270 +1.1 1.6 peptide-methionine (R)-S-oxide reductase MsrB compare
DDA3937_RS17470 +1.1 1.9 DUF2384 domain-containing protein compare
DDA3937_RS23495 +1.1 2.8 hypothetical protein compare
DDA3937_RS07765 +1.1 1.5 ABC transporter ATP-binding protein compare
DDA3937_RS01645 +1.1 3.5 stringent starvation protein A compare
DDA3937_RS03695 +1.1 3.0 hypothetical protein compare
DDA3937_RS15470 +1.0 1.4 cytoskeleton protein RodZ compare
DDA3937_RS06490 +1.0 1.6 cyd operon protein YbgE compare
DDA3937_RS21345 +1.0 2.9 NAD(P)-dependent oxidoreductase compare
DDA3937_RS23440 +1.0 1.1 hypothetical protein compare
DDA3937_RS06100 +1.0 2.3 M15 family metallopeptidase compare
DDA3937_RS10160 +1.0 1.0 copper homeostasis periplasmic binding protein CopC compare
DDA3937_RS18550 +1.0 6.3 deoxyribonuclease I compare
DDA3937_RS19580 +1.0 5.9 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DDA3937_RS23235 +1.0 1.2 hypothetical protein compare
DDA3937_RS18875 +1.0 2.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifN compare
DDA3937_RS08655 +1.0 1.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS20135 +0.9 1.9 HTH-type transcriptional activator IlvY compare
DDA3937_RS14165 +0.9 2.8 formate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS13390 +0.9 3.4 flagellar hook-length control protein FliK compare
DDA3937_RS18610 +0.9 5.0 RNA chaperone Hfq compare
DDA3937_RS15450 +0.9 1.0 outer membrane protein assembly factor BamB compare
DDA3937_RS03995 +0.9 2.0 P-type conjugative transfer ATPase TrbB compare
DDA3937_RS19990 +0.9 1.3 nuclear transport factor 2 family protein compare
DDA3937_RS13300 +0.9 4.2 RNA polymerase sigma factor FliA compare
DDA3937_RS03120 +0.9 2.1 SCP2 domain-containing protein compare
DDA3937_RS23400 +0.9 1.9 hypothetical protein compare
DDA3937_RS03095 +0.9 3.2 lipoprotein NlpI compare
DDA3937_RS20835 +0.9 5.7 AraC family transcriptional regulator VfmE compare
DDA3937_RS04220 +0.9 3.0 hypothetical protein compare
DDA3937_RS10155 +0.9 1.6 DNA polymerase III subunit theta compare
DDA3937_RS02290 +0.9 1.8 HD domain-containing protein compare
DDA3937_RS12595 +0.9 4.2 transcriptional regulator SlyA compare
DDA3937_RS03965 +0.9 1.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS12245 +0.9 1.9 serine protease compare
DDA3937_RS14230 +0.9 1.4 hydrogenase-2 assembly chaperone compare
DDA3937_RS00135 +0.9 0.9 glutamate--ammonia ligase compare
DDA3937_RS21705 +0.9 1.6 hypothetical protein compare
DDA3937_RS01450 +0.9 6.3 ribonuclease G compare
DDA3937_RS20125 +0.8 2.6 hypothetical protein compare
DDA3937_RS02870 +0.8 4.3 signal transduction histidine-protein kinase/phosphatase UhpB compare
DDA3937_RS13470 +0.8 4.3 flagellar hook assembly protein FlgD compare
DDA3937_RS18190 +0.8 2.6 hypothetical protein compare
DDA3937_RS11700 +0.8 1.4 type III secretion system export apparatus subunit SctS compare
DDA3937_RS09025 +0.8 2.1 DUF4224 domain-containing protein compare
DDA3937_RS13365 +0.8 5.4 flagellar M-ring protein FliF compare
DDA3937_RS09475 +0.8 3.1 putrescine ABC transporter permease PotI compare
DDA3937_RS13375 +0.8 1.7 flagellar assembly protein FliH compare
DDA3937_RS17600 +0.8 1.2 IS110 family transposase compare
DDA3937_RS11090 +0.8 1.3 CesT family type III secretion system chaperone compare
DDA3937_RS01710 +0.8 5.3 penicillin-binding protein activator compare
DDA3937_RS12520 +0.8 2.0 stress response translation initiation inhibitor YciH compare
DDA3937_RS13070 +0.8 3.3 purine nucleoside phosphoramidase compare
DDA3937_RS04225 +0.8 3.1 DUF2586 domain-containing protein compare
DDA3937_RS10030 +0.8 2.2 hypothetical protein compare
DDA3937_RS15700 +0.8 5.6 sensor domain-containing diguanylate cyclase compare
DDA3937_RS08010 +0.8 1.8 ABC transporter substrate-binding protein compare
DDA3937_RS13505 +0.8 4.8 flagellar biosynthesis protein FlhA compare
DDA3937_RS03485 +0.8 1.8 hypothetical protein compare
DDA3937_RS01685 +0.8 3.1 monofunctional biosynthetic peptidoglycan transglycosylase compare
DDA3937_RS13460 +0.8 5.0 flagellar basal body rod protein FlgF compare
DDA3937_RS04645 +0.8 1.9 tartrate dehydrogenase compare
DDA3937_RS04950 +0.8 1.8 phosphoenolpyruvate--protein phosphotransferase compare
DDA3937_RS07440 +0.8 2.0 hydrogenase 4 subunit H compare
DDA3937_RS08415 +0.8 2.1 IS3 family transposase compare
DDA3937_RS09170 +0.8 1.4 hypothetical protein compare
DDA3937_RS13380 +0.8 4.8 flagellum-specific ATP synthase FliI compare
DDA3937_RS13370 +0.8 4.0 flagellar motor switch protein FliG compare
DDA3937_RS13445 +0.8 3.3 flagellar basal body P-ring protein FlgI compare
DDA3937_RS19360 +0.8 5.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS05315 +0.7 1.8 DUF1987 domain-containing protein compare
DDA3937_RS18475 +0.7 2.1 zinc-binding alcohol dehydrogenase family protein compare
DDA3937_RS14525 +0.7 1.7 AzlC family ABC transporter permease compare
DDA3937_RS02345 +0.7 2.1 hypothetical protein compare
DDA3937_RS19715 +0.7 1.9 thiosulfate sulfurtransferase GlpE compare
DDA3937_RS19605 +0.7 1.2 Hsp33 family molecular chaperone HslO compare
DDA3937_RS00755 +0.7 1.7 tRNA (cytidine(34)-2'-O)-methyltransferase compare
DDA3937_RS13630 +0.7 1.4 hypothetical protein compare
DDA3937_RS15660 +0.7 3.0 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS03885 +0.7 1.9 CcdB family protein compare
DDA3937_RS20820 +0.7 3.0 two-component system response regulator VfmH compare
DDA3937_RS21120 +0.7 1.2 putative FMN-dependent luciferase-like monooxygenase compare
DDA3937_RS18835 +0.7 2.5 nitrogen fixation protein NifZ compare
DDA3937_RS00905 +0.7 1.6 ribonuclease E activity regulator RraA compare
DDA3937_RS13385 +0.7 3.2 flagella biosynthesis chaperone FliJ compare
DDA3937_RS07090 +0.7 2.5 SEL1-like repeat protein compare
DDA3937_RS04655 +0.7 3.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DDA3937_RS13420 +0.7 3.1 flagellar biosynthesis protein FliQ compare
DDA3937_RS13945 +0.7 4.3 hypothetical protein compare
DDA3937_RS05705 +0.7 3.2 acyl-CoA thioesterase II compare
DDA3937_RS20815 +0.7 5.0 two-component system sensor histidine kinase VfmI compare
DDA3937_RS03580 +0.7 2.9 hypothetical protein compare
DDA3937_RS04320 +0.7 2.5 outer membrane protein assembly factor BamE compare
DDA3937_RS13935 +0.7 2.9 hypothetical protein compare
DDA3937_RS13455 +0.7 2.9 flagellar basal-body rod protein FlgG compare
DDA3937_RS16005 +0.7 1.5 YacC family pilotin-like protein compare
DDA3937_RS08845 +0.7 2.3 LysR family transcriptional regulator compare
DDA3937_RS19145 +0.7 1.4 large-conductance mechanosensitive channel protein MscL compare
DDA3937_RS01835 +0.7 1.4 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS09275 +0.7 1.8 3-oxoacyl-ACP synthase compare
DDA3937_RS02805 +0.7 1.3 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS10420 +0.7 1.2 YciI family protein compare
DDA3937_RS02630 +0.7 1.8 TIGR04141 family sporadically distributed protein compare
DDA3937_RS17775 +0.7 2.5 metal ABC transporter substrate-binding protein compare
DDA3937_RS13165 +0.7 1.6 antibiotic biosynthesis monooxygenase compare
DDA3937_RS10040 +0.7 1.5 carboxy-S-adenosyl-L-methionine synthase CmoA compare
DDA3937_RS05630 +0.7 1.3 transcriptional regulator BolA compare
DDA3937_RS03450 +0.7 1.7 TOBE domain-containing protein compare
DDA3937_RS23165 +0.7 2.4 hypothetical protein compare
DDA3937_RS07385 +0.7 2.7 aspartate/glutamate racemase family protein compare
DDA3937_RS04680 +0.6 1.5 TIGR00645 family protein compare
DDA3937_RS09010 +0.6 1.3 transposase compare
DDA3937_RS02505 +0.6 2.1 ABC transporter substrate-binding protein compare
DDA3937_RS18320 +0.6 2.9 ribonucleoside hydrolase RihC compare
DDA3937_RS14770 +0.6 2.2 type II secretion system minor pseudopilin GspJ compare
DDA3937_RS07925 +0.6 2.5 MotA/TolQ/ExbB proton channel family protein compare
DDA3937_RS09920 +0.6 2.7 NADH:flavin oxidoreductase compare
DDA3937_RS20190 +0.6 1.1 HTH-type transcriptional regulator HdfR compare
DDA3937_RS11670 +0.6 3.3 type III secretion system inner membrane ring subunit SctD compare
DDA3937_RS06050 +0.6 1.8 M48 family metallopeptidase compare
DDA3937_RS13015 +0.6 1.9 arylamine N-acetyltransferase compare
DDA3937_RS02875 +0.6 4.5 MFS transporter compare
DDA3937_RS04495 +0.6 1.2 sulfate transporter CysZ compare
DDA3937_RS14680 +0.6 2.4 IS110 family transposase compare
DDA3937_RS05320 +0.6 3.1 hypothetical protein compare
DDA3937_RS16270 +0.6 1.7 LysE family translocator compare
DDA3937_RS10680 +0.6 3.4 ATP-dependent dethiobiotin synthetase BioD compare
DDA3937_RS11520 +0.6 1.4 FeoC-like transcriptional regulator compare
DDA3937_RS22270 +0.6 0.9 type I addiction module toxin, SymE family compare
DDA3937_RS07005 +0.6 1.1 type I addiction module toxin, SymE family compare
DDA3937_RS00055 +0.6 4.4 ribose operon transcriptional repressor RbsR compare
DDA3937_RS18845 +0.6 2.1 homocitrate synthase compare
DDA3937_RS14905 +0.6 1.3 PTS transporter subunit EIIB compare
DDA3937_RS13465 +0.6 4.5 flagellar hook protein FlgE compare
DDA3937_RS18850 +0.6 1.6 cysteine desulfurase NifS compare
DDA3937_RS22370 +0.6 1.9 His-Xaa-Ser repeat protein HxsA compare
DDA3937_RS13835 +0.6 2.1 lytic transglycosylase domain-containing protein compare
DDA3937_RS21515 +0.6 1.8 ATP-grasp domain-containing protein compare
DDA3937_RS13400 +0.6 3.8 flagellar motor switch protein FliM compare
DDA3937_RS01290 +0.6 3.5 endonuclease compare
DDA3937_RS15785 +0.6 1.7 autonomous glycyl radical cofactor GrcA compare
DDA3937_RS16620 +0.6 1.5 methylthioribulose 1-phosphate dehydratase compare
DDA3937_RS11655 +0.6 1.4 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS09075 +0.6 0.9 hypothetical protein compare
DDA3937_RS13360 +0.6 1.6 flagellar hook-basal body complex protein FliE compare
DDA3937_RS07770 +0.6 1.2 RraA family protein compare
DDA3937_RS15710 +0.6 1.2 YfhL family 4Fe-4S dicluster ferredoxin compare
DDA3937_RS13440 +0.6 2.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS00235 +0.6 1.7 MFS transporter compare
DDA3937_RS05030 +0.6 1.2 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
DDA3937_RS22450 +0.6 1.1 NAD-dependent dehydratase compare
DDA3937_RS21415 +0.6 2.1 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS23345 +0.6 1.2 hypothetical protein compare
DDA3937_RS03730 +0.6 1.5 myo-inosose-2 dehydratase compare
DDA3937_RS05775 +0.6 0.8 adenine phosphoribosyltransferase compare
DDA3937_RS07710 +0.6 2.1 diaminobutyrate--2-oxoglutarate transaminase compare
DDA3937_RS03665 +0.6 3.3 MurR/RpiR family transcriptional regulator compare
DDA3937_RS16910 +0.6 0.8 DUF3561 family protein compare
DDA3937_RS04230 +0.6 2.7 DUF2597 family protein compare
DDA3937_RS20250 +0.6 1.5 fatty acid oxidation complex subunit alpha FadB compare
DDA3937_RS03640 +0.6 1.9 iron-containing alcohol dehydrogenase compare
DDA3937_RS09345 +0.6 0.5 IS200/IS605 family transposase compare
DDA3937_RS02660 +0.6 2.0 RNA-directed DNA polymerase compare
DDA3937_RS17880 +0.6 1.1 YacL family protein compare
DDA3937_RS13355 +0.6 1.1 flagellar protein FliT compare
DDA3937_RS03660 +0.6 1.2 2,5-didehydrogluconate reductase DkgB compare
DDA3937_RS06640 +0.6 2.1 molybdate ABC transporter permease subunit compare
DDA3937_RS08035 +0.6 1.8 dihydrodipicolinate synthase family protein compare
DDA3937_RS21985 +0.6 1.4 50S ribosomal protein L36 compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms