Experiment setATCH150 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -4.4 -3.4 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS10460 -4.0 -7.2 tryptophan synthase subunit alpha compare
DDA3937_RS19615 -3.8 -5.8 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS10140 -3.8 -5.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS10475 -3.4 -7.8 anthranilate phosphoribosyltransferase compare
DDA3937_RS10470 -3.4 -7.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS10485 -3.3 -13.0 anthranilate synthase component 1 compare
DDA3937_RS10985 -3.2 -3.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS09585 -3.0 -1.8 thioredoxin-disulfide reductase compare
DDA3937_RS10465 -3.0 -9.5 tryptophan synthase subunit beta compare
DDA3937_RS01820 -2.7 -3.2 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS18585 -2.7 -1.9 adenylosuccinate synthase compare
DDA3937_RS20455 -2.7 -3.2 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS17830 -2.7 -2.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS14910 -2.7 -13.4 beta-galactosidase compare
DDA3937_RS04895 -2.6 -3.5 oxidative damage protection protein compare
DDA3937_RS18405 -2.6 -10.1 threonine synthase compare
DDA3937_RS08400 -2.5 -1.8 H-NS histone family protein compare
DDA3937_RS06755 -2.5 -4.7 glycosyltransferase family 2 protein compare
DDA3937_RS06770 -2.5 -2.0 oligosaccharide flippase family protein compare
DDA3937_RS00920 -2.4 -3.4 ATP-dependent protease subunit HslV compare
DDA3937_RS06475 -2.4 -2.6 succinate--CoA ligase subunit alpha compare
DDA3937_RS14435 -2.4 -14.7 amidophosphoribosyltransferase compare
DDA3937_RS01530 -2.4 -3.6 RNA polymerase factor sigma-54 compare
DDA3937_RS15655 -2.4 -15.3 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS18120 -2.4 -7.7 3-isopropylmalate dehydrogenase compare
DDA3937_RS18125 -2.3 -10.1 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS06025 -2.3 -7.9 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS11335 -2.3 -6.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS00135 -2.3 -1.2 glutamate--ammonia ligase compare
DDA3937_RS04125 -2.2 -5.0 acetyltransferase compare
DDA3937_RS01220 -2.2 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS18410 -2.1 -4.5 homoserine kinase compare
DDA3937_RS18480 -2.1 -6.3 phosphoglycerate dehydrogenase compare
DDA3937_RS23305 -2.1 -2.3 hypothetical protein compare
DDA3937_RS15420 -2.0 -5.3 IMP dehydrogenase compare
DDA3937_RS07760 -2.0 -3.0 iron ABC transporter permease compare
DDA3937_RS01215 -2.0 -6.8 phosphoribosylamine--glycine ligase compare
DDA3937_RS05575 -2.0 -1.4 MFS transporter compare
DDA3937_RS10480 -1.9 -1.8 glutamine amidotransferase compare
DDA3937_RS18080 -1.9 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS16935 -1.9 -3.0 phosphoadenylyl-sulfate reductase compare
DDA3937_RS06350 -1.9 -4.7 replication initiation negative regulator SeqA compare
DDA3937_RS01000 -1.8 -2.9 glutamate racemase compare
DDA3937_RS20130 -1.8 -6.6 ketol-acid reductoisomerase compare
DDA3937_RS18115 -1.8 -7.0 2-isopropylmalate synthase compare
DDA3937_RS06040 -1.8 -1.2 DnaA inactivator Hda compare
DDA3937_RS00640 -1.8 -1.9 cell division ATP-binding protein FtsE compare
DDA3937_RS00600 -1.7 -1.1 DcrB family lipoprotein compare
DDA3937_RS06615 -1.7 -10.7 UDP-glucose 4-epimerase GalE compare
DDA3937_RS15060 -1.7 -1.8 imidazolonepropionase compare
DDA3937_RS12855 -1.7 -6.2 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS15765 -1.7 -12.1 RNA polymerase sigma factor RpoE compare
DDA3937_RS22485 -1.7 -2.7 hypothetical protein compare
DDA3937_RS09715 -1.7 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS19915 -1.6 -0.9 class I adenylate cyclase compare
DDA3937_RS17515 -1.6 -1.5 DUF1471 domain-containing protein compare
DDA3937_RS07785 -1.6 -1.3 OsmC family protein compare
DDA3937_RS17155 -1.6 -7.7 translocation/assembly module TamB compare
DDA3937_RS10675 -1.6 -1.6 ROK family transcriptional regulator compare
DDA3937_RS15485 -1.6 -4.9 nucleoside-diphosphate kinase compare
DDA3937_RS02425 -1.6 -4.0 phosphoserine phosphatase compare
DDA3937_RS14475 -1.6 -4.5 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS06075 -1.6 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS13205 -1.6 -4.5 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS03355 -1.6 -1.6 tRNA-Gly compare
DDA3937_RS14385 -1.6 -5.0 phosphate acetyltransferase compare
DDA3937_RS19015 -1.6 -6.4 glucose-6-phosphate isomerase compare
DDA3937_RS01250 -1.6 -1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS15815 -1.6 -1.1 tRNA-Val compare
DDA3937_RS05560 -1.5 -1.9 YajQ family cyclic di-GMP-binding protein compare
DDA3937_RS20885 -1.5 -2.0 MarR family transcriptional regulator compare
DDA3937_RS17835 -1.5 -6.2 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS01925 -1.5 -7.6 aspartate carbamoyltransferase compare
DDA3937_RS19510 -1.5 -1.8 peptidylprolyl isomerase A compare
DDA3937_RS06145 -1.5 -1.8 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS19880 -1.5 -4.6 DNA helicase II compare
DDA3937_RS06870 -1.5 -1.9 iron ABC transporter permease compare
DDA3937_RS05150 -1.5 -3.5 sigma E protease regulator RseP compare
DDA3937_RS18310 -1.5 -7.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18305 -1.5 -6.7 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS03420 -1.5 -3.4 sugar transferase compare
DDA3937_RS18275 -1.5 -6.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS17265 -1.5 -5.0 nitric oxide-sensing transcriptional repressor NsrR compare
DDA3937_RS00125 -1.4 -1.8 nitrogen regulation protein NR(I) compare
DDA3937_RS04490 -1.4 -2.8 cysteine synthase A compare
DDA3937_RS05895 -1.4 -3.7 transcriptional regulator RcsB compare
DDA3937_RS17160 -1.4 -5.6 outer membrane protein assembly factor compare
DDA3937_RS06295 -1.4 -5.5 asparagine synthase B compare
DDA3937_RS03100 -1.4 -2.0 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS13060 -1.4 -2.1 penicillin-binding protein activator LpoB compare
DDA3937_RS00645 -1.4 -4.7 cell division protein FtsX compare
DDA3937_RS23075 -1.4 -3.1 hypothetical protein compare
DDA3937_RS04480 -1.4 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS14440 -1.4 -6.8 colicin V production protein compare
DDA3937_RS03300 -1.4 -1.2 site-specific tyrosine recombinase XerD compare
DDA3937_RS16245 -1.4 -2.2 recombinase RecA compare
DDA3937_RS08100 -1.4 -1.8 triphosphoribosyl-dephospho-CoA synthase compare
DDA3937_RS16110 -1.4 -7.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS01550 -1.4 -4.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS12525 -1.4 -3.3 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS12535 -1.4 -2.8 LapA family protein compare
DDA3937_RS01740 -1.3 -3.4 outer membrane channel protein TolC compare
DDA3937_RS20715 -1.3 -2.1 DUF1471 domain-containing protein compare
DDA3937_RS20150 -1.3 -6.8 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS16095 -1.3 -3.1 16S ribosomal RNA compare
DDA3937_RS06685 -1.3 -2.6 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS18415 -1.3 -5.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS01915 -1.3 -1.4 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS10950 -1.3 -3.5 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS03280 -1.3 -1.6 FAD assembly factor SdhE compare
DDA3937_RS20660 -1.3 -2.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS06695 -1.3 -4.2 dCTP deaminase compare
DDA3937_RS15340 -1.3 -2.3 hydroxyethylthiazole kinase compare
DDA3937_RS12800 -1.3 -2.9 AI-2E family transporter YdiK compare
DDA3937_RS14465 -1.3 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS20535 -1.3 -5.2 orotate phosphoribosyltransferase compare
DDA3937_RS11205 -1.2 -4.8 septum site-determining protein MinC compare
DDA3937_RS20155 -1.2 -4.6 dihydroxy-acid dehydratase compare
DDA3937_RS17545 -1.2 -3.1 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS17180 -1.2 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS04915 -1.2 -2.2 DUF2884 domain-containing protein compare
DDA3937_RS00845 -1.2 -1.1 6-phosphofructokinase compare
DDA3937_RS21605 -1.2 -5.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS08735 -1.2 -3.8 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS00975 -1.2 -1.2 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS00915 -1.2 -3.5 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS01600 -1.2 -5.6 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS14615 -1.2 -4.0 long-chain fatty acid transporter FadL compare
DDA3937_RS11875 -1.2 -3.4 AAA family ATPase compare
DDA3937_RS05640 -1.2 -5.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS13740 -1.1 -2.6 DUF736 domain-containing protein compare
DDA3937_RS13160 -1.1 -1.3 ribonuclease E compare
DDA3937_RS05160 -1.1 -1.4 molecular chaperone Skp compare
DDA3937_RS00335 -1.1 -3.6 AAA family ATPase compare
DDA3937_RS09195 -1.1 -2.4 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS20305 -1.1 -5.1 Sec-independent protein translocase subunit TatC compare
DDA3937_RS21310 -1.1 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS19340 -1.1 -2.3 transcriptional regulator compare
DDA3937_RS06210 -1.1 -1.7 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS20135 -1.1 -4.2 HTH-type transcriptional activator IlvY compare
DDA3937_RS13170 -1.1 -2.9 dihydroorotase compare
DDA3937_RS10440 -1.1 -1.4 UPF0259 family protein compare
DDA3937_RS22175 -1.1 -1.4 IS3 family transposase compare
DDA3937_RS00925 -1.1 -3.4 cell division protein FtsN compare
DDA3937_RS11330 -1.1 -4.4 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS06805 -1.1 -6.3 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS14130 -1.1 -1.6 TetR/AcrR family transcriptional regulator compare
DDA3937_RS10405 -1.1 -1.4 cardiolipin synthase compare
DDA3937_RS09590 -1.1 -3.3 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS11035 -1.1 -2.8 redox-regulated ATPase YchF compare
DDA3937_RS14100 -1.0 -2.5 nitrate ABC transporter permease compare
DDA3937_RS06490 -1.0 -1.2 cyd operon protein YbgE compare
DDA3937_RS06740 -1.0 -3.8 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS08310 -1.0 -2.7 nuclear transport factor 2 family protein compare
DDA3937_RS09670 -1.0 -3.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS06765 -1.0 -1.6 DUF616 domain-containing protein compare
DDA3937_RS19930 -1.0 -2.5 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS01875 -1.0 -7.6 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS10325 -1.0 -5.2 formyltetrahydrofolate deformylase compare
DDA3937_RS18690 -1.0 -2.8 glycosyltransferase compare
DDA3937_RS12445 -1.0 -1.1 peptide ABC transporter permease SapB compare
DDA3937_RS04945 -1.0 -4.3 RNA pyrophosphohydrolase compare
DDA3937_RS02325 -1.0 -0.8 HTH-type transcriptional activator RhaS compare
DDA3937_RS13515 -1.0 -5.4 protein phosphatase CheZ compare
DDA3937_RS15780 -1.0 -3.6 ATP-dependent RNA helicase SrmB compare
DDA3937_RS17150 -1.0 -1.5 gamma-glutamylcyclotransferase compare
DDA3937_RS17640 -1.0 -2.7 phage tail protein compare
DDA3937_RS14470 -1.0 -2.2 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS10445 -1.0 -1.9 hypothetical protein compare
DDA3937_RS10575 -1.0 -3.0 electron transport complex subunit RsxA compare
DDA3937_RS09575 -1.0 -0.7 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS00560 -1.0 -4.3 insulinase family protein compare
DDA3937_RS17485 -1.0 -1.7 envelope stress response protein PspG compare
DDA3937_RS17985 -1.0 -3.1 cell division protein ZapD compare
DDA3937_RS15110 -1.0 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS14665 -1.0 -3.1 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS04940 -1.0 -2.9 DNA mismatch repair endonuclease MutH compare
DDA3937_RS19395 -0.9 -4.0 peptidylprolyl isomerase compare
DDA3937_RS14095 -0.9 -0.9 ABC transporter ATP-binding protein compare
DDA3937_RS18180 -0.9 -1.6 DedA family protein compare
DDA3937_RS11715 -0.9 -1.9 hypothetical protein compare
DDA3937_RS22235 -0.9 -2.1 immunity 8 family protein compare
DDA3937_RS11210 -0.9 -2.5 septum site-determining protein MinD compare
DDA3937_RS13110 -0.9 -3.2 beta-ketoacyl-ACP synthase II compare
DDA3937_RS21120 -0.9 -1.3 putative FMN-dependent luciferase-like monooxygenase compare
DDA3937_RS06070 -0.9 -2.5 outer membrane protein assembly factor BamC compare
DDA3937_RS20470 -0.9 -3.8 glycosyltransferase family 9 protein compare
DDA3937_RS05755 -0.9 -1.9 pleiotropic regulatory protein RsmS compare
DDA3937_RS05645 -0.9 -5.2 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS06655 -0.9 -3.4 6-phosphogluconolactonase compare
DDA3937_RS16130 -0.9 -3.7 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS13970 -0.9 -1.9 type II toxin-antitoxin system CcdA family antitoxin compare
DDA3937_RS04960 -0.9 -1.3 thymidylate synthase compare
DDA3937_RS11275 -0.9 -4.3 TerC family protein compare
DDA3937_RS00495 -0.9 -3.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS12840 -0.9 -3.5 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL compare
DDA3937_RS11725 -0.9 -1.2 Hcp family type VI secretion system effector compare
DDA3937_RS09235 -0.9 -1.8 1-phosphofructokinase compare
DDA3937_RS06610 -0.9 -3.2 galactose-1-phosphate uridylyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms