Experiment setATCH149 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -5.1 -4.3 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS06770 -3.8 -2.6 oligosaccharide flippase family protein compare
DDA3937_RS15420 -3.6 -8.2 IMP dehydrogenase compare
DDA3937_RS18585 -3.4 -2.6 adenylosuccinate synthase compare
DDA3937_RS06025 -3.3 -10.5 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS15655 -3.2 -19.5 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS19615 -3.1 -5.1 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS18125 -3.1 -12.7 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS12525 -2.9 -7.9 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS14435 -2.9 -19.3 amidophosphoribosyltransferase compare
DDA3937_RS02425 -2.9 -10.3 phosphoserine phosphatase compare
DDA3937_RS18120 -2.9 -7.4 3-isopropylmalate dehydrogenase compare
DDA3937_RS18480 -2.8 -7.8 phosphoglycerate dehydrogenase compare
DDA3937_RS18405 -2.8 -10.2 threonine synthase compare
DDA3937_RS10140 -2.8 -5.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS06755 -2.7 -6.3 glycosyltransferase family 2 protein compare
DDA3937_RS18305 -2.6 -15.1 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS01820 -2.5 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS06075 -2.5 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS01220 -2.5 -11.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS20535 -2.4 -11.6 orotate phosphoribosyltransferase compare
DDA3937_RS12855 -2.3 -6.1 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS18410 -2.3 -5.5 homoserine kinase compare
DDA3937_RS01925 -2.3 -11.0 aspartate carbamoyltransferase compare
DDA3937_RS15110 -2.2 -6.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS01215 -2.2 -6.8 phosphoribosylamine--glycine ligase compare
DDA3937_RS14440 -2.2 -9.6 colicin V production protein compare
DDA3937_RS00640 -2.2 -2.6 cell division ATP-binding protein FtsE compare
DDA3937_RS10465 -2.1 -9.0 tryptophan synthase subunit beta compare
DDA3937_RS07175 -2.1 -2.8 LysR family transcriptional regulator compare
DDA3937_RS06295 -2.1 -10.4 asparagine synthase B compare
DDA3937_RS10985 -2.1 -3.3 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS20130 -2.1 -9.3 ketol-acid reductoisomerase compare
DDA3937_RS14910 -2.0 -10.3 beta-galactosidase compare
DDA3937_RS18310 -2.0 -7.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS16130 -2.0 -9.2 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS12800 -2.0 -5.3 AI-2E family transporter YdiK compare
DDA3937_RS20455 -2.0 -4.1 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS13170 -2.0 -4.5 dihydroorotase compare
DDA3937_RS04125 -2.0 -4.3 acetyltransferase compare
DDA3937_RS11875 -1.9 -3.6 AAA family ATPase compare
DDA3937_RS01740 -1.9 -4.2 outer membrane channel protein TolC compare
DDA3937_RS10325 -1.9 -9.9 formyltetrahydrofolate deformylase compare
DDA3937_RS18115 -1.9 -7.7 2-isopropylmalate synthase compare
DDA3937_RS00125 -1.9 -2.5 nitrogen regulation protein NR(I) compare
DDA3937_RS20155 -1.8 -9.7 dihydroxy-acid dehydratase compare
DDA3937_RS18010 -1.8 -1.3 DUF721 domain-containing protein compare
DDA3937_RS06270 -1.8 -2.7 tRNA-Met compare
DDA3937_RS00135 -1.8 -1.5 glutamate--ammonia ligase compare
DDA3937_RS09575 -1.8 -1.3 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS16935 -1.7 -3.7 phosphoadenylyl-sulfate reductase compare
DDA3937_RS03420 -1.7 -3.2 sugar transferase compare
DDA3937_RS19510 -1.7 -3.4 peptidylprolyl isomerase A compare
DDA3937_RS14385 -1.7 -7.6 phosphate acetyltransferase compare
DDA3937_RS08555 -1.7 -2.3 DUF2474 domain-containing protein compare
DDA3937_RS00975 -1.6 -2.2 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS17425 -1.6 -7.8 diaminopimelate decarboxylase compare
DDA3937_RS02855 -1.6 -1.6 hypothetical protein compare
DDA3937_RS18415 -1.6 -7.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS11335 -1.6 -5.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS10460 -1.6 -6.6 tryptophan synthase subunit alpha compare
DDA3937_RS06350 -1.6 -3.9 replication initiation negative regulator SeqA compare
DDA3937_RS09345 -1.6 -1.4 IS200/IS605 family transposase compare
DDA3937_RS12445 -1.5 -2.4 peptide ABC transporter permease SapB compare
DDA3937_RS01550 -1.5 -5.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS00140 -1.5 -6.9 ribosome-dependent GTPase TypA compare
DDA3937_RS11770 -1.5 -2.1 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS22035 -1.4 -2.5 immunity protein RhsIC compare
DDA3937_RS09195 -1.4 -3.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS11035 -1.4 -3.9 redox-regulated ATPase YchF compare
DDA3937_RS01000 -1.4 -3.2 glutamate racemase compare
DDA3937_RS01530 -1.4 -3.1 RNA polymerase factor sigma-54 compare
DDA3937_RS21375 -1.4 -3.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS09585 -1.4 -1.8 thioredoxin-disulfide reductase compare
DDA3937_RS04960 -1.4 -2.1 thymidylate synthase compare
DDA3937_RS08400 -1.4 -2.5 H-NS histone family protein compare
DDA3937_RS10470 -1.4 -6.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS09590 -1.4 -3.8 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS05645 -1.4 -9.1 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS03280 -1.4 -2.6 FAD assembly factor SdhE compare
DDA3937_RS16840 -1.3 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS20150 -1.3 -6.9 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS06615 -1.3 -8.4 UDP-glucose 4-epimerase GalE compare
DDA3937_RS23190 -1.3 -1.8 hypothetical protein compare
DDA3937_RS10485 -1.3 -7.9 anthranilate synthase component 1 compare
DDA3937_RS09455 -1.3 -2.9 YbjN domain-containing protein compare
DDA3937_RS00835 -1.3 -1.6 2TM domain-containing protein compare
DDA3937_RS05080 -1.3 -2.1 YqcC family protein compare
DDA3937_RS11275 -1.2 -5.3 TerC family protein compare
DDA3937_RS19015 -1.2 -6.1 glucose-6-phosphate isomerase compare
DDA3937_RS07765 -1.2 -3.5 ABC transporter ATP-binding protein compare
DDA3937_RS02445 -1.2 -2.2 peptide chain release factor 3 compare
DDA3937_RS22235 -1.2 -3.8 immunity 8 family protein compare
DDA3937_RS05640 -1.2 -5.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS06695 -1.2 -4.7 dCTP deaminase compare
DDA3937_RS23335 -1.2 -2.5 leu operon leader peptide compare
DDA3937_RS17160 -1.2 -5.4 outer membrane protein assembly factor compare
DDA3937_RS17180 -1.2 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS16195 -1.2 -2.6 glutamate--cysteine ligase compare
DDA3937_RS19620 -1.1 -2.3 two-component system response regulator OmpR compare
DDA3937_RS15750 -1.1 -1.9 SoxR-reducing system protein RseC compare
DDA3937_RS20970 -1.1 -3.7 mannitol operon repressor compare
DDA3937_RS15485 -1.1 -2.8 nucleoside-diphosphate kinase compare
DDA3937_RS12610 -1.1 -3.5 Grx4 family monothiol glutaredoxin compare
DDA3937_RS19880 -1.1 -4.7 DNA helicase II compare
DDA3937_RS18275 -1.1 -5.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS16095 -1.1 -2.8 16S ribosomal RNA compare
DDA3937_RS10475 -1.1 -5.2 anthranilate phosphoribosyltransferase compare
DDA3937_RS13060 -1.1 -1.7 penicillin-binding protein activator LpoB compare
DDA3937_RS18670 -1.1 -2.6 ABC transporter permease compare
DDA3937_RS07760 -1.1 -2.1 iron ABC transporter permease compare
DDA3937_RS06070 -1.1 -3.1 outer membrane protein assembly factor BamC compare
DDA3937_RS13495 -1.1 -3.2 flagellar export chaperone FlgN compare
DDA3937_RS05160 -1.1 -1.7 molecular chaperone Skp compare
DDA3937_RS04360 -1.1 -2.9 YaiI/YqxD family protein compare
DDA3937_RS07235 -1.1 -1.5 response regulator transcription factor compare
DDA3937_RS10580 -1.1 -1.9 transcription modulator YdgT compare
DDA3937_RS16110 -1.0 -6.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS20470 -1.0 -5.2 glycosyltransferase family 9 protein compare
DDA3937_RS13920 -1.0 -1.2 CcdB family protein compare
DDA3937_RS20855 -1.0 -2.0 acyl carrier protein compare
DDA3937_RS04195 -1.0 -3.5 GPO family capsid scaffolding protein compare
DDA3937_RS15450 -1.0 -1.3 outer membrane protein assembly factor BamB compare
DDA3937_RS16650 -1.0 -1.6 amino acid ABC transporter permease compare
DDA3937_RS02265 -1.0 -1.8 AAA family ATPase compare
DDA3937_RS14465 -1.0 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS17835 -1.0 -4.0 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS06805 -1.0 -6.6 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS05500 -1.0 -2.9 transcriptional regulator NrdR compare
DDA3937_RS06610 -1.0 -4.1 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS14950 -1.0 -4.9 hypothetical protein compare
DDA3937_RS01915 -1.0 -1.3 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS15780 -1.0 -4.2 ATP-dependent RNA helicase SrmB compare
DDA3937_RS09785 -1.0 -2.1 citrate (pro-3S)-lyase subunit beta compare
DDA3937_RS13520 -1.0 -4.9 chemotaxis response regulator CheY compare
DDA3937_RS18690 -0.9 -3.1 glycosyltransferase compare
DDA3937_RS15910 -0.9 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS10480 -0.9 -1.5 glutamine amidotransferase compare
DDA3937_RS00600 -0.9 -1.5 DcrB family lipoprotein compare
DDA3937_RS03285 -0.9 -1.5 protein YgfX compare
DDA3937_RS05405 -0.9 -0.9 recombination-associated protein RdgC compare
DDA3937_RS14475 -0.9 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS17255 -0.9 -1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DDA3937_RS04895 -0.9 -2.2 oxidative damage protection protein compare
DDA3937_RS04490 -0.9 -2.3 cysteine synthase A compare
DDA3937_RS06210 -0.9 -1.7 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS11330 -0.9 -5.3 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS21205 -0.9 -2.4 Lrp/AsnC family transcriptional regulator compare
DDA3937_RS13345 -0.9 -3.6 flagellar filament capping protein FliD compare
DDA3937_RS04110 -0.9 -1.6 Hcp family type VI secretion system effector compare
DDA3937_RS17840 -0.9 -3.4 four-carbon acid sugar kinase family protein compare
DDA3937_RS06765 -0.9 -1.3 DUF616 domain-containing protein compare
DDA3937_RS18005 -0.9 -1.9 secA regulator SecM compare
DDA3937_RS00900 -0.9 -3.6 cell division protein ZapB compare
DDA3937_RS13220 -0.9 -2.0 glucan biosynthesis protein G compare
DDA3937_RS16245 -0.9 -1.8 recombinase RecA compare
DDA3937_RS04480 -0.9 -4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS13215 -0.8 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS19435 -0.8 -3.4 phosphoribulokinase compare
DDA3937_RS09370 -0.8 -1.1 GTP cyclohydrolase I FolE compare
DDA3937_RS09670 -0.8 -3.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS20165 -0.8 -4.2 acetolactate synthase 2 small subunit compare
DDA3937_RS03300 -0.8 -1.0 site-specific tyrosine recombinase XerD compare
DDA3937_RS09775 -0.8 -1.1 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS11365 -0.8 -1.3 oligogalacturonate-specific porin KdgM compare
DDA3937_RS15150 -0.8 -4.3 polyphosphate kinase 1 compare
DDA3937_RS04945 -0.8 -3.4 RNA pyrophosphohydrolase compare
DDA3937_RS03620 -0.8 -1.5 hypothetical protein compare
DDA3937_RS15815 -0.8 -1.0 tRNA-Val compare
DDA3937_RS13160 -0.8 -1.5 ribonuclease E compare
DDA3937_RS21310 -0.8 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS15245 -0.8 -1.6 porin OmpA compare
DDA3937_RS05150 -0.8 -2.9 sigma E protease regulator RseP compare
DDA3937_RS07750 -0.8 -2.4 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS00910 -0.8 -5.3 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS07305 -0.8 -3.6 MarR family transcriptional regulator compare
DDA3937_RS17015 -0.8 -6.5 GTP diphosphokinase compare
DDA3937_RS14100 -0.8 -2.8 nitrate ABC transporter permease compare
DDA3937_RS13540 -0.8 -4.0 chemotaxis protein CheW compare
DDA3937_RS05895 -0.8 -2.1 transcriptional regulator RcsB compare
DDA3937_RS20170 -0.8 -4.7 acetolactate synthase 2 catalytic subunit compare
DDA3937_RS16915 -0.8 -2.8 adenylyl-sulfate kinase compare
DDA3937_RS12660 -0.8 -1.9 type II secretion system protein M compare
DDA3937_RS18655 -0.8 -5.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS06745 -0.8 -3.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DDA3937_RS19395 -0.8 -4.3 peptidylprolyl isomerase compare
DDA3937_RS09550 -0.8 -1.8 cold shock-like protein CspD compare
DDA3937_RS10135 -0.8 -4.3 glucose-6-phosphate dehydrogenase compare
DDA3937_RS14235 -0.8 -2.0 HyaD/HybD family hydrogenase maturation endopeptidase compare
DDA3937_RS13555 -0.8 -4.7 flagellar motor stator protein MotA compare
DDA3937_RS10555 -0.8 -1.3 electron transport complex subunit RsxG compare
DDA3937_RS02965 -0.7 -1.3 transcriptional regulator ArgR compare
DDA3937_RS18755 -0.7 -1.9 organic hydroperoxide resistance protein compare
DDA3937_RS15720 -0.7 -3.1 pyridoxine 5'-phosphate synthase compare
DDA3937_RS10405 -0.7 -1.8 cardiolipin synthase compare
DDA3937_RS10725 -0.7 -1.4 acyltransferase family protein compare
DDA3937_RS00645 -0.7 -2.6 cell division protein FtsX compare
DDA3937_RS18430 -0.7 -1.5 protein CreA compare
DDA3937_RS20420 -0.7 -3.0 murein hydrolase activator EnvC compare
DDA3937_RS13515 -0.7 -3.9 protein phosphatase CheZ compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms