Experiment setATCH148 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DDA3937_RS16650 -3.7 -2.1 amino acid ABC transporter permease compare
DDA3937_RS10140 -3.0 -5.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS19615 -2.8 -3.5 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS18120 -2.8 -8.1 3-isopropylmalate dehydrogenase compare
DDA3937_RS10465 -2.5 -8.4 tryptophan synthase subunit beta compare
DDA3937_RS10485 -2.5 -11.7 anthranilate synthase component 1 compare
DDA3937_RS10480 -2.4 -2.6 glutamine amidotransferase compare
DDA3937_RS00600 -2.3 -0.9 DcrB family lipoprotein compare
DDA3937_RS11335 -2.3 -6.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS20455 -2.2 -3.0 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS01820 -2.2 -2.6 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS10470 -2.1 -6.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS11715 -2.1 -3.5 hypothetical protein compare
DDA3937_RS12445 -2.0 -1.7 peptide ABC transporter permease SapB compare
DDA3937_RS19510 -1.9 -2.3 peptidylprolyl isomerase A compare
DDA3937_RS10985 -1.9 -2.7 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS06615 -1.9 -11.7 UDP-glucose 4-epimerase GalE compare
DDA3937_RS00835 -1.9 -1.4 2TM domain-containing protein compare
DDA3937_RS18130 -1.8 -2.8 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS06350 -1.8 -4.1 replication initiation negative regulator SeqA compare
DDA3937_RS04960 -1.8 -2.1 thymidylate synthase compare
DDA3937_RS22035 -1.8 -1.8 immunity protein RhsIC compare
DDA3937_RS18125 -1.7 -7.8 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS15420 -1.7 -5.5 IMP dehydrogenase compare
DDA3937_RS06075 -1.7 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS06295 -1.7 -8.5 asparagine synthase B compare
DDA3937_RS10460 -1.7 -5.4 tryptophan synthase subunit alpha compare
DDA3937_RS17155 -1.7 -8.3 translocation/assembly module TamB compare
DDA3937_RS15910 -1.7 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS14910 -1.7 -6.7 beta-galactosidase compare
DDA3937_RS17160 -1.7 -7.8 outer membrane protein assembly factor compare
DDA3937_RS05615 -1.7 -1.4 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS00640 -1.6 -2.2 cell division ATP-binding protein FtsE compare
DDA3937_RS04480 -1.6 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS03300 -1.6 -1.2 site-specific tyrosine recombinase XerD compare
DDA3937_RS01600 -1.6 -9.0 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS16935 -1.6 -2.5 phosphoadenylyl-sulfate reductase compare
DDA3937_RS13930 -1.5 -3.0 transposase compare
DDA3937_RS00580 -1.5 -9.4 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS10435 -1.5 -1.6 septation protein A compare
DDA3937_RS13220 -1.5 -3.5 glucan biosynthesis protein G compare
DDA3937_RS11035 -1.5 -3.3 redox-regulated ATPase YchF compare
DDA3937_RS04310 -1.5 -1.7 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS04125 -1.5 -3.6 acetyltransferase compare
DDA3937_RS00975 -1.5 -1.3 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS19015 -1.4 -6.8 glucose-6-phosphate isomerase compare
DDA3937_RS04570 -1.4 -1.8 FMN-binding protein compare
DDA3937_RS19620 -1.4 -2.8 two-component system response regulator OmpR compare
DDA3937_RS14675 -1.4 -2.3 ABC transporter ATP-binding protein compare
DDA3937_RS05575 -1.4 -1.3 MFS transporter compare
DDA3937_RS07175 -1.4 -1.6 LysR family transcriptional regulator compare
DDA3937_RS15765 -1.4 -8.8 RNA polymerase sigma factor RpoE compare
DDA3937_RS12920 -1.4 -2.0 MBL fold metallo-hydrolase compare
DDA3937_RS13205 -1.4 -3.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS20475 -1.4 -1.4 glycosyltransferase family 4 protein compare
DDA3937_RS11700 -1.4 -1.6 type III secretion system export apparatus subunit SctS compare
DDA3937_RS01740 -1.4 -3.2 outer membrane channel protein TolC compare
DDA3937_RS12510 -1.4 -3.7 L-ribulose-5-phosphate 4-epimerase compare
DDA3937_RS18305 -1.3 -7.6 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS10950 -1.3 -4.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS13240 -1.3 -2.6 GhoT/OrtT family toxin compare
DDA3937_RS18585 -1.3 -1.2 adenylosuccinate synthase compare
DDA3937_RS12855 -1.3 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS23305 -1.3 -1.9 hypothetical protein compare
DDA3937_RS03420 -1.3 -2.7 sugar transferase compare
DDA3937_RS15110 -1.3 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS17830 -1.3 -1.3 DeoR/GlpR transcriptional regulator compare
DDA3937_RS05595 -1.3 -1.2 protoheme IX farnesyltransferase compare
DDA3937_RS19880 -1.3 -5.4 DNA helicase II compare
DDA3937_RS16805 -1.3 -1.7 5S ribosomal RNA compare
DDA3937_RS21310 -1.3 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS19935 -1.2 -3.0 protoheme IX biogenesis protein HemY compare
DDA3937_RS09670 -1.2 -5.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS09235 -1.2 -2.8 1-phosphofructokinase compare
DDA3937_RS21375 -1.2 -3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS14465 -1.2 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS09575 -1.2 -0.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS00140 -1.2 -4.6 ribosome-dependent GTPase TypA compare
DDA3937_RS10575 -1.2 -3.3 electron transport complex subunit RsxA compare
DDA3937_RS01870 -1.2 -4.0 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS15655 -1.2 -7.7 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS18405 -1.2 -5.3 threonine synthase compare
DDA3937_RS22485 -1.2 -1.9 hypothetical protein compare
DDA3937_RS18425 -1.2 -6.1 two-component system response regulator ArcA compare
DDA3937_RS06805 -1.2 -7.7 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS09650 -1.2 -6.3 pyruvate formate lyase 1-activating protein compare
DDA3937_RS19670 -1.2 -2.6 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS06605 -1.1 -4.9 galactokinase compare
DDA3937_RS06695 -1.1 -3.7 dCTP deaminase compare
DDA3937_RS05895 -1.1 -3.7 transcriptional regulator RcsB compare
DDA3937_RS23520 -1.1 -1.1 cell wall anchor protein compare
DDA3937_RS13155 -1.1 -3.7 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DDA3937_RS14385 -1.1 -5.5 phosphate acetyltransferase compare
DDA3937_RS17835 -1.1 -4.3 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS06755 -1.1 -2.8 glycosyltransferase family 2 protein compare
DDA3937_RS02805 -1.1 -2.9 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS23495 -1.1 -1.6 hypothetical protein compare
DDA3937_RS08585 -1.1 -1.9 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS07235 -1.1 -1.4 response regulator transcription factor compare
DDA3937_RS14870 -1.1 -1.5 YjfB family protein compare
DDA3937_RS05645 -1.1 -6.3 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS04245 -1.1 -3.3 hypothetical protein compare
DDA3937_RS01000 -1.1 -2.3 glutamate racemase compare
DDA3937_RS00005 -1.1 -3.5 FMN-binding protein MioC compare
DDA3937_RS10410 -1.1 -1.3 IS200/IS605 family transposase compare
DDA3937_RS01455 -1.0 -5.1 AsmA2 domain-containing protein YhdP compare
DDA3937_RS06685 -1.0 -2.1 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS08400 -1.0 -1.1 H-NS histone family protein compare
DDA3937_RS00560 -1.0 -5.5 insulinase family protein compare
DDA3937_RS13215 -1.0 -2.8 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS12900 -1.0 -7.7 porin compare
DDA3937_RS14435 -1.0 -6.0 amidophosphoribosyltransferase compare
DDA3937_RS18115 -1.0 -4.9 2-isopropylmalate synthase compare
DDA3937_RS22235 -1.0 -2.7 immunity 8 family protein compare
DDA3937_RS04490 -1.0 -2.1 cysteine synthase A compare
DDA3937_RS12170 -1.0 -1.3 hypothetical protein compare
DDA3937_RS22340 -1.0 -1.5 EexN family lipoprotein compare
DDA3937_RS15745 -1.0 -3.2 elongation factor 4 compare
DDA3937_RS19515 -1.0 -2.8 mandelate racemase family protein compare
DDA3937_RS10725 -1.0 -2.2 acyltransferase family protein compare
DDA3937_RS09120 -1.0 -1.0 YejL family protein compare
DDA3937_RS01530 -1.0 -2.4 RNA polymerase factor sigma-54 compare
DDA3937_RS14665 -1.0 -4.5 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS09655 -1.0 -6.7 formate C-acetyltransferase compare
DDA3937_RS23375 -1.0 -1.9 hypothetical protein compare
DDA3937_RS20415 -0.9 -2.2 rhodanese-like domain-containing protein compare
DDA3937_RS19915 -0.9 -0.8 class I adenylate cyclase compare
DDA3937_RS15150 -0.9 -3.9 polyphosphate kinase 1 compare
DDA3937_RS07730 -0.9 -2.7 DHA2 family efflux MFS transporter permease subunit compare
DDA3937_RS15815 -0.9 -0.8 tRNA-Val compare
DDA3937_RS10555 -0.9 -1.4 electron transport complex subunit RsxG compare
DDA3937_RS11180 -0.9 -2.5 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS20885 -0.9 -1.3 MarR family transcriptional regulator compare
DDA3937_RS00750 -0.9 -1.7 DUF2756 domain-containing protein compare
DDA3937_RS02835 -0.9 -4.4 altronate dehydratase compare
DDA3937_RS18310 -0.9 -4.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS00920 -0.9 -2.5 ATP-dependent protease subunit HslV compare
DDA3937_RS00275 -0.9 -2.6 GNAT family N-acetyltransferase compare
DDA3937_RS22270 -0.9 -1.4 type I addiction module toxin, SymE family compare
DDA3937_RS12600 -0.9 -2.2 lactoylglutathione lyase compare
DDA3937_RS06305 -0.9 -4.1 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS08735 -0.9 -3.3 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS01110 -0.9 -2.2 hypothetical protein compare
DDA3937_RS19690 -0.9 -1.7 YhcH/YjgK/YiaL family protein compare
DDA3937_RS01215 -0.9 -3.3 phosphoribosylamine--glycine ligase compare
DDA3937_RS00645 -0.9 -2.5 cell division protein FtsX compare
DDA3937_RS05635 -0.8 -4.3 trigger factor compare
DDA3937_RS15305 -0.8 -1.3 TIM barrel protein compare
DDA3937_RS21720 -0.8 -1.7 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS14445 -0.8 -3.9 cell division protein DedD compare
DDA3937_RS18480 -0.8 -2.5 phosphoglycerate dehydrogenase compare
DDA3937_RS05955 -0.8 -2.7 SDR family oxidoreductase compare
DDA3937_RS14380 -0.8 -2.1 acetate kinase compare
DDA3937_RS00900 -0.8 -2.5 cell division protein ZapB compare
DDA3937_RS16565 -0.8 -1.1 hypothetical protein compare
DDA3937_RS12610 -0.8 -2.0 Grx4 family monothiol glutaredoxin compare
DDA3937_RS23485 -0.8 -0.8 hypothetical protein compare
DDA3937_RS11875 -0.8 -2.3 AAA family ATPase compare
DDA3937_RS12790 -0.8 -0.9 hotdog fold thioesterase compare
DDA3937_RS15645 -0.8 -3.6 two-component system QseEF-associated lipoprotein QseG compare
DDA3937_RS01415 -0.8 -4.2 protein-methionine-sulfoxide reductase catalytic subunit MsrP compare
DDA3937_RS15450 -0.8 -1.5 outer membrane protein assembly factor BamB compare
DDA3937_RS13490 -0.8 -0.8 anti-sigma-28 factor FlgM compare
DDA3937_RS11210 -0.8 -2.0 septum site-determining protein MinD compare
DDA3937_RS01550 -0.8 -2.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS13065 -0.8 -2.2 DUF1425 domain-containing protein compare
DDA3937_RS04945 -0.8 -3.5 RNA pyrophosphohydrolase compare
DDA3937_RS23450 -0.8 -1.4 CPBP family intramembrane metalloprotease compare
DDA3937_RS05500 -0.8 -3.3 transcriptional regulator NrdR compare
DDA3937_RS13840 -0.8 -2.6 TrbC/VirB2 family protein compare
DDA3937_RS05470 -0.8 -1.6 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS03250 -0.8 -1.0 glycine cleavage system protein GcvH compare
DDA3937_RS01460 -0.8 -4.9 metalloprotease TldD compare
DDA3937_RS11205 -0.8 -3.7 septum site-determining protein MinC compare
DDA3937_RS20545 -0.8 -1.3 DUF202 domain-containing protein compare
DDA3937_RS16915 -0.8 -2.6 adenylyl-sulfate kinase compare
DDA3937_RS12010 -0.8 -1.0 hypothetical protein compare
DDA3937_RS11615 -0.8 -1.5 type III secretion system stator protein SctL compare
DDA3937_RS14695 -0.8 -3.8 enterochelin esterase compare
DDA3937_RS01495 -0.8 -3.7 ribosome-associated protein compare
DDA3937_RS05775 -0.8 -1.1 adenine phosphoribosyltransferase compare
DDA3937_RS05640 -0.8 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS16195 -0.8 -1.9 glutamate--cysteine ligase compare
DDA3937_RS10560 -0.8 -2.3 electron transport complex subunit RsxD compare
DDA3937_RS00775 -0.8 -1.6 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS16945 -0.8 -4.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS17300 -0.8 -3.8 YggS family pyridoxal phosphate-dependent enzyme compare
DDA3937_RS23335 -0.8 -2.0 leu operon leader peptide compare
DDA3937_RS06235 -0.8 -4.2 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS06270 -0.8 -1.1 tRNA-Met compare
DDA3937_RS13520 -0.8 -4.0 chemotaxis response regulator CheY compare
DDA3937_RS09175 -0.8 -3.5 microcin C ABC transporter ATP-binding protein YejF compare
DDA3937_RS09195 -0.8 -1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS20855 -0.8 -1.3 acyl carrier protein compare
DDA3937_RS15720 -0.8 -2.5 pyridoxine 5'-phosphate synthase compare
DDA3937_RS18870 -0.8 -2.9 nitrogen fixation protein NifX compare
DDA3937_RS12280 -0.8 -0.6 YnbE family lipoprotein compare
DDA3937_RS14230 -0.7 -1.8 hydrogenase-2 assembly chaperone compare
DDA3937_RS07255 -0.7 -1.6 hypothetical protein compare
DDA3937_RS14005 -0.7 -3.0 His-Xaa-Ser system protein HxsD compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms