Experiment setATCH148 for Dickeya dadantii 3937

Compare to:

Atlantic

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS04070 +5.5 16.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS21960 +5.0 8.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS15705 +4.7 23.1 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS22250 +4.3 1.9 DUF2627 domain-containing protein compare
DDA3937_RS02685 +4.0 5.0 hypothetical protein compare
DDA3937_RS06870 +3.4 2.0 iron ABC transporter permease compare
DDA3937_RS19360 +3.2 17.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS10980 +3.1 12.9 tetratricopeptide repeat-containing protein compare
DDA3937_RS11100 +2.9 2.6 hypothetical protein compare
DDA3937_RS01065 +2.8 2.3 elongation factor Tu compare
DDA3937_RS07975 +2.3 1.4 ATP-binding cassette domain-containing protein compare
DDA3937_RS19755 +2.1 2.2 cold-shock protein compare
DDA3937_RS02325 +2.1 1.8 HTH-type transcriptional activator RhaS compare
DDA3937_RS16005 +2.0 2.7 YacC family pilotin-like protein compare
DDA3937_RS23465 +2.0 2.0 hypothetical protein compare
DDA3937_RS13160 +1.9 2.8 ribonuclease E compare
DDA3937_RS09520 +1.8 2.8 heavy metal-binding domain-containing protein compare
DDA3937_RS17930 +1.8 1.7 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
DDA3937_RS18610 +1.8 7.5 RNA chaperone Hfq compare
DDA3937_RS02790 +1.8 3.5 YqjK-like family protein compare
DDA3937_RS15530 +1.7 1.7 co-chaperone HscB compare
DDA3937_RS16430 +1.7 2.3 acyl carrier protein compare
DDA3937_RS13565 +1.6 7.5 flagellar transcriptional regulator FlhD compare
DDA3937_RS20700 +1.6 1.9 hypothetical protein compare
DDA3937_RS18600 +1.6 1.6 FtsH protease activity modulator HflK compare
DDA3937_RS07325 +1.6 2.3 DUF2501 domain-containing protein compare
DDA3937_RS13560 +1.6 10.0 flagellar transcriptional regulator FlhC compare
DDA3937_RS00865 +1.6 2.0 triose-phosphate isomerase compare
DDA3937_RS09415 +1.5 1.5 alpha/beta hydrolase compare
DDA3937_RS13330 +1.5 13.2 methyltransferase regulatory domain-containing protein compare
DDA3937_RS15715 +1.5 2.6 holo-ACP synthase compare
DDA3937_RS19780 +1.5 1.4 gluconokinase compare
DDA3937_RS13555 +1.5 8.4 flagellar motor stator protein MotA compare
DDA3937_RS13325 +1.4 9.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS06360 +1.4 1.6 EamA family transporter compare
DDA3937_RS15455 +1.4 1.9 YfgM family protein compare
DDA3937_RS05320 +1.4 4.1 hypothetical protein compare
DDA3937_RS14705 +1.4 2.1 isochorismate synthase compare
DDA3937_RS13550 +1.4 8.5 flagellar motor protein MotB compare
DDA3937_RS03095 +1.4 6.6 lipoprotein NlpI compare
DDA3937_RS03680 +1.4 1.6 DNA gyrase inhibitor SbmC compare
DDA3937_RS23365 +1.3 1.2 hypothetical protein compare
DDA3937_RS00700 +1.3 2.0 MCP four helix bundle domain-containing protein compare
DDA3937_RS08465 +1.3 1.2 acyl-CoA thioesterase compare
DDA3937_RS11965 +1.3 6.1 carboxy terminal-processing peptidase compare
DDA3937_RS10720 +1.3 3.0 hypothetical protein compare
DDA3937_RS13320 +1.3 8.8 ATP-grasp domain-containing protein compare
DDA3937_RS08505 +1.2 1.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
DDA3937_RS04665 +1.2 7.2 helix-turn-helix transcriptional regulator compare
DDA3937_RS02665 +1.2 1.8 type II toxin-antitoxin system toxin CcdB compare
DDA3937_RS08555 +1.2 1.2 DUF2474 domain-containing protein compare
DDA3937_RS21150 +1.2 2.2 LysR family transcriptional regulator compare
DDA3937_RS09435 +1.2 1.5 inner membrane protein YbjM compare
DDA3937_RS01710 +1.2 6.7 penicillin-binding protein activator compare
DDA3937_RS15210 +1.2 1.3 DUF2057 family protein compare
DDA3937_RS09255 +1.2 2.6 YeiH family putative sulfate export transporter compare
DDA3937_RS17135 +1.2 2.2 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS11685 +1.1 1.4 HrpP protein compare
DDA3937_RS07750 +1.1 2.5 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS22040 +1.1 2.9 hypothetical protein compare
DDA3937_RS05725 +1.1 2.2 Hha toxicity modulator TomB compare
DDA3937_RS13625 +1.1 1.6 LysB family phage lysis regulatory protein compare
DDA3937_RS11465 +1.1 8.6 EAL domain-containing protein compare
DDA3937_RS05710 +1.1 1.5 YbaY family lipoprotein compare
DDA3937_RS09455 +1.1 1.3 YbjN domain-containing protein compare
DDA3937_RS13485 +1.1 2.6 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS21950 +1.1 2.0 helix-turn-helix domain-containing protein compare
DDA3937_RS01795 +1.0 1.7 2,5-didehydrogluconate reductase DkgA compare
DDA3937_RS13835 +1.0 1.9 lytic transglycosylase domain-containing protein compare
DDA3937_RS22435 +1.0 2.0 AlpA family transcriptional regulator compare
DDA3937_RS17770 +1.0 1.5 metal ABC transporter permease compare
DDA3937_RS08855 +1.0 2.7 biotin carboxyl carrier domain-containing protein compare
DDA3937_RS18880 +1.0 2.9 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
DDA3937_RS19580 +1.0 7.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DDA3937_RS23170 +1.0 1.6 YciY family protein compare
DDA3937_RS18680 +1.0 3.6 GDP-L-fucose synthase compare
DDA3937_RS18475 +1.0 1.5 zinc-binding alcohol dehydrogenase family protein compare
DDA3937_RS15660 +1.0 5.6 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS18560 +1.0 2.5 glutathione synthase compare
DDA3937_RS11760 +1.0 1.8 amino acid ABC transporter permease compare
DDA3937_RS17545 +1.0 1.0 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS05435 +1.0 3.4 phosphate ABC transporter substrate-binding protein compare
DDA3937_RS12440 +1.0 2.2 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS12425 +1.0 0.8 phage shock protein PspA compare
DDA3937_RS13445 +1.0 3.2 flagellar basal body P-ring protein FlgI compare
DDA3937_RS14340 +1.0 3.8 transcriptional regulator LrhA compare
DDA3937_RS18665 +1.0 8.2 GDP-mannose 4,6-dehydratase compare
DDA3937_RS06985 +0.9 2.5 type I addiction module toxin, SymE family compare
DDA3937_RS04405 +0.9 3.5 GNAT family N-acetyltransferase compare
DDA3937_RS17775 +0.9 3.3 metal ABC transporter substrate-binding protein compare
DDA3937_RS22080 +0.9 1.4 transposase compare
DDA3937_RS06620 +0.9 1.9 molybdate ABC transporter ATP-binding protein ModF compare
DDA3937_RS00090 +0.9 1.6 YihD family protein compare
DDA3937_RS13070 +0.9 1.8 purine nucleoside phosphoramidase compare
DDA3937_RS08655 +0.9 1.1 DeoR/GlpR transcriptional regulator compare
DDA3937_RS03660 +0.9 1.8 2,5-didehydrogluconate reductase DkgB compare
DDA3937_RS12930 +0.9 4.4 L,D-transpeptidase compare
DDA3937_RS15345 +0.9 2.2 transporter substrate-binding domain-containing protein compare
DDA3937_RS15060 +0.9 1.4 imidazolonepropionase compare
DDA3937_RS08100 +0.9 1.5 triphosphoribosyl-dephospho-CoA synthase compare
DDA3937_RS10680 +0.9 5.2 ATP-dependent dethiobiotin synthetase BioD compare
DDA3937_RS04235 +0.9 1.6 phage holin family protein compare
DDA3937_RS01355 +0.9 1.6 hypothetical protein compare
DDA3937_RS22560 +0.9 1.5 membrane protein insertion efficiency factor YidD compare
DDA3937_RS07770 +0.9 1.9 RraA family protein compare
DDA3937_RS07505 +0.9 2.1 glutathione-dependent disulfide-bond oxidoreductase compare
DDA3937_RS13415 +0.9 3.5 flagellar type III secretion system pore protein FliP compare
DDA3937_RS14940 +0.8 1.9 amidohydrolase compare
DDA3937_RS06735 +0.8 5.0 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS17375 +0.8 2.1 HTH-type transcriptional regulator GalR compare
DDA3937_RS15035 +0.8 2.0 ABC transporter permease subunit compare
DDA3937_RS16965 +0.8 1.9 6-carboxytetrahydropterin synthase QueD compare
DDA3937_RS02150 +0.8 1.1 AAA family ATPase compare
DDA3937_RS00525 +0.8 3.4 cellulose synthase operon protein YhjQ compare
DDA3937_RS19845 +0.8 1.9 threonine export protein RhtC compare
DDA3937_RS12490 +0.8 5.5 exoribonuclease II compare
DDA3937_RS04555 +0.8 0.8 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS21510 +0.8 2.8 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
DDA3937_RS18685 +0.8 4.6 WbeA compare
DDA3937_RS00630 +0.8 2.3 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DDA3937_RS20190 +0.8 1.1 HTH-type transcriptional regulator HdfR compare
DDA3937_RS19540 +0.8 1.6 SPOR domain-containing protein compare
DDA3937_RS09510 +0.8 2.4 arginine ABC transporter substrate-binding protein compare
DDA3937_RS00055 +0.8 4.7 ribose operon transcriptional repressor RbsR compare
DDA3937_RS06670 +0.8 1.8 VirK family protein compare
DDA3937_RS18265 +0.8 1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
DDA3937_RS13405 +0.8 3.4 flagellar motor switch protein FliN compare
DDA3937_RS19835 +0.8 1.9 homoserine/homoserine lactone efflux protein compare
DDA3937_RS02265 +0.8 1.0 AAA family ATPase compare
DDA3937_RS05850 +0.8 1.2 Cu(I)-responsive transcriptional regulator compare
DDA3937_RS02310 +0.8 0.9 rhamnulose-1-phosphate aldolase compare
DDA3937_RS13920 +0.8 0.8 CcdB family protein compare
DDA3937_RS00545 +0.8 1.3 cellulose synthase compare
DDA3937_RS16070 +0.8 1.8 endonuclease/exonuclease/phosphatase family protein compare
DDA3937_RS19660 +0.8 5.7 4-alpha-glucanotransferase compare
DDA3937_RS10045 +0.8 3.4 MAPEG family protein compare
DDA3937_RS22280 +0.7 0.6 GpE family phage tail protein compare
DDA3937_RS00885 +0.7 2.0 class II fructose-bisphosphatase compare
DDA3937_RS14720 +0.7 1.5 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
DDA3937_RS10905 +0.7 1.4 LysR family transcriptional regulator compare
DDA3937_RS11970 +0.7 2.3 RNA chaperone ProQ compare
DDA3937_RS04230 +0.7 2.6 DUF2597 family protein compare
DDA3937_RS09830 +0.7 1.1 hypothetical protein compare
DDA3937_RS17645 +0.7 3.2 phage tail protein compare
DDA3937_RS19895 +0.7 1.6 DUF484 domain-containing protein compare
DDA3937_RS13580 +0.7 1.2 protein DsrB compare
DDA3937_RS12595 +0.7 3.6 transcriptional regulator SlyA compare
DDA3937_RS13340 +0.7 1.5 flagellin FliC compare
DDA3937_RS03900 +0.7 2.8 replication initiator protein A compare
DDA3937_RS20890 +0.7 1.9 argininosuccinate synthase compare
DDA3937_RS10430 +0.7 1.2 acyl-CoA thioester hydrolase YciA compare
DDA3937_RS17255 +0.7 1.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DDA3937_RS02600 +0.7 1.9 glycosyltransferase family 4 protein compare
DDA3937_RS02205 +0.7 2.2 type-1Aa cytolytic delta-endotoxin compare
DDA3937_RS10200 +0.7 0.9 YebY family protein compare
DDA3937_RS03995 +0.7 1.4 P-type conjugative transfer ATPase TrbB compare
DDA3937_RS15275 +0.7 1.6 multidrug transporter subunit MdtD compare
DDA3937_RS15135 +0.7 3.4 phosphate ABC transporter ATP-binding protein compare
DDA3937_RS02645 +0.7 1.4 DUF1778 domain-containing protein compare
DDA3937_RS01155 +0.7 2.1 thiazole synthase compare
DDA3937_RS11370 +0.7 2.6 alpha/beta hydrolase compare
DDA3937_RS05940 +0.7 2.0 membrane protein compare
DDA3937_RS09075 +0.7 1.0 hypothetical protein compare
DDA3937_RS09445 +0.7 2.0 oxygen-insensitive NADPH nitroreductase compare
DDA3937_RS13380 +0.7 4.1 flagellum-specific ATP synthase FliI compare
DDA3937_RS05415 +0.7 3.7 hypothetical protein compare
DDA3937_RS04015 +0.7 1.7 P-type conjugative transfer protein TrbJ compare
DDA3937_RS16910 +0.7 1.3 DUF3561 family protein compare
DDA3937_RS13460 +0.7 2.5 flagellar basal body rod protein FlgF compare
DDA3937_RS08870 +0.7 1.8 biotin-dependent carboxyltransferase compare
DDA3937_RS13370 +0.7 3.7 flagellar motor switch protein FliG compare
DDA3937_RS01580 +0.6 2.8 phospholipid-binding protein MlaC compare
DDA3937_RS07260 +0.6 2.3 hypothetical protein compare
DDA3937_RS11730 +0.6 1.7 OsmC family protein compare
DDA3937_RS05630 +0.6 1.8 transcriptional regulator BolA compare
DDA3937_RS07130 +0.6 1.3 deferrochelatase/peroxidase EfeB compare
DDA3937_RS14550 +0.6 2.0 coniferyl aldehyde dehydrogenase compare
DDA3937_RS06250 +0.6 2.0 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
DDA3937_RS16860 +0.6 1.1 Rcs stress response system protein RcsF compare
DDA3937_RS05255 +0.6 2.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS06440 +0.6 2.4 succinate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS21390 +0.6 1.2 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
DDA3937_RS02900 +0.6 2.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS04320 +0.6 2.8 outer membrane protein assembly factor BamE compare
DDA3937_RS03125 +0.6 2.7 N-acetyltransferase compare
DDA3937_RS07640 +0.6 1.0 phosphonate metabolism protein PhnP compare
DDA3937_RS17190 +0.6 1.0 iron-sulfur cluster repair protein YtfE compare
DDA3937_RS05965 +0.6 1.3 ABC transporter ATP-binding protein compare
DDA3937_RS08615 +0.6 1.7 cardiolipin synthase ClsB compare
DDA3937_RS23320 +0.6 1.6 hypothetical protein compare
DDA3937_RS12675 +0.6 1.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
DDA3937_RS10060 +0.6 1.0 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS00615 +0.6 1.6 lysoplasmalogenase compare
DDA3937_RS07295 +0.6 2.3 ABC transporter ATP-binding protein compare
DDA3937_RS16795 +0.6 1.1 YfiM family lipoprotein compare
DDA3937_RS08310 +0.6 1.3 nuclear transport factor 2 family protein compare
DDA3937_RS21380 +0.6 3.0 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DDA3937_RS10590 +0.6 3.6 ribulokinase compare
DDA3937_RS04085 +0.6 1.3 hypothetical protein compare
DDA3937_RS10585 +0.6 3.3 L-arabinose isomerase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Atlantic across organisms