Experiment setATCH147 for Dickeya dadantii 3937

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PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS02685 -4.3 -1.9 hypothetical protein compare
DDA3937_RS04130 -4.2 -1.8 hypothetical protein compare
DDA3937_RS07005 -3.9 -2.0 type I addiction module toxin, SymE family compare
DDA3937_RS03280 -3.9 -2.0 FAD assembly factor SdhE compare
DDA3937_RS12170 -3.7 -1.9 hypothetical protein compare
DDA3937_RS00970 -3.6 -3.6 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS20700 -3.5 -1.1 hypothetical protein compare
DDA3937_RS04340 -3.4 -11.2 Nramp family divalent metal transporter compare
DDA3937_RS00835 -3.4 -1.3 2TM domain-containing protein compare
DDA3937_RS03285 -3.3 -2.3 protein YgfX compare
DDA3937_RS01775 -3.3 -9.1 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS23305 -3.2 -2.1 hypothetical protein compare
DDA3937_RS18080 -3.2 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS19615 -3.2 -3.4 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06075 -3.2 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS09015 -3.1 -2.3 hypothetical protein compare
DDA3937_RS09120 -3.1 -1.1 YejL family protein compare
DDA3937_RS10725 -3.0 -2.3 acyltransferase family protein compare
DDA3937_RS19640 -3.0 -4.6 hypothetical protein compare
DDA3937_RS16795 -3.0 -1.4 YfiM family lipoprotein compare
DDA3937_RS04820 -3.0 -2.5 integrase compare
DDA3937_RS00025 -3.0 -18.3 low affinity potassium transporter Kup compare
DDA3937_RS09975 -2.9 -2.1 molecular chaperone compare
DDA3937_RS12600 -2.9 -2.9 lactoylglutathione lyase compare
DDA3937_RS07235 -2.8 -1.8 response regulator transcription factor compare
DDA3937_RS19000 -2.8 -1.4 EF-P beta-lysylation protein EpmB compare
DDA3937_RS05775 -2.8 -2.2 adenine phosphoribosyltransferase compare
DDA3937_RS02545 -2.8 -7.4 heavy metal translocating P-type ATPase compare
DDA3937_RS06795 -2.8 -3.5 UTP--glucose-1-phosphate uridylyltransferase compare
DDA3937_RS11970 -2.7 -5.2 RNA chaperone ProQ compare
DDA3937_RS06100 -2.7 -1.8 M15 family metallopeptidase compare
DDA3937_RS18610 -2.7 -11.0 RNA chaperone Hfq compare
DDA3937_RS06770 -2.6 -1.7 oligosaccharide flippase family protein compare
DDA3937_RS06805 -2.6 -12.1 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS10435 -2.6 -1.6 septation protein A compare
DDA3937_RS03095 -2.6 -8.5 lipoprotein NlpI compare
DDA3937_RS14910 -2.6 -13.1 beta-galactosidase compare
DDA3937_RS22175 -2.5 -1.7 IS3 family transposase compare
DDA3937_RS11965 -2.5 -10.3 carboxy terminal-processing peptidase compare
DDA3937_RS20660 -2.5 -2.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS15765 -2.5 -13.8 RNA polymerase sigma factor RpoE compare
DDA3937_RS21265 -2.5 -9.7 oligopeptidase A compare
DDA3937_RS02725 -2.4 -1.6 FxsA family protein compare
DDA3937_RS19590 -2.4 -1.7 intracellular growth attenuator family protein compare
DDA3937_RS08440 -2.4 -4.6 DUF3168 domain-containing protein compare
DDA3937_RS10580 -2.4 -2.0 transcription modulator YdgT compare
DDA3937_RS13490 -2.4 -1.0 anti-sigma-28 factor FlgM compare
DDA3937_RS13170 -2.3 -8.8 dihydroorotase compare
DDA3937_RS17160 -2.3 -7.8 outer membrane protein assembly factor compare
DDA3937_RS23340 -2.3 -2.0 ilvB operon leader peptide IvbL compare
DDA3937_RS18600 -2.3 -1.5 FtsH protease activity modulator HflK compare
DDA3937_RS01520 -2.3 -6.6 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS18005 -2.2 -2.6 secA regulator SecM compare
DDA3937_RS10045 -2.2 -6.0 MAPEG family protein compare
DDA3937_RS12790 -2.2 -1.4 hotdog fold thioesterase compare
DDA3937_RS10985 -2.2 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS07325 -2.2 -3.8 DUF2501 domain-containing protein compare
DDA3937_RS08365 -2.2 -2.5 hypothetical protein compare
DDA3937_RS21045 -2.2 -11.7 ROK family transcriptional regulator compare
DDA3937_RS15910 -2.2 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS11365 -2.2 -1.7 oligogalacturonate-specific porin KdgM compare
DDA3937_RS12445 -2.2 -1.4 peptide ABC transporter permease SapB compare
DDA3937_RS16060 -2.2 -10.5 hydroxyacylglutathione hydrolase compare
DDA3937_RS00645 -2.1 -5.0 cell division protein FtsX compare
DDA3937_RS12450 -2.1 -1.8 peptide ABC transporter permease SapC compare
DDA3937_RS01000 -2.1 -2.9 glutamate racemase compare
DDA3937_RS11850 -2.1 -5.7 DUF1852 domain-containing protein compare
DDA3937_RS23020 -2.1 -0.9 hypothetical protein compare
DDA3937_RS11210 -2.1 -3.0 septum site-determining protein MinD compare
DDA3937_RS05955 -2.1 -3.8 SDR family oxidoreductase compare
DDA3937_RS11220 -2.0 -3.8 ribonuclease D compare
DDA3937_RS17800 -2.0 -4.0 ATP-grasp domain-containing protein compare
DDA3937_RS10135 -1.9 -5.8 glucose-6-phosphate dehydrogenase compare
DDA3937_RS01770 -1.9 -6.3 LysR family transcriptional regulator compare
DDA3937_RS01515 -1.9 -8.1 RNase adapter RapZ compare
DDA3937_RS12855 -1.9 -6.6 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS18535 -1.9 -6.4 biosynthetic arginine decarboxylase compare
DDA3937_RS01570 -1.9 -5.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS17995 -1.9 -1.9 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS23450 -1.9 -2.4 CPBP family intramembrane metalloprotease compare
DDA3937_RS20190 -1.8 -1.8 HTH-type transcriptional regulator HdfR compare
DDA3937_RS01580 -1.8 -8.5 phospholipid-binding protein MlaC compare
DDA3937_RS11655 -1.8 -2.3 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS15450 -1.8 -2.4 outer membrane protein assembly factor BamB compare
DDA3937_RS17155 -1.8 -6.5 translocation/assembly module TamB compare
DDA3937_RS19620 -1.8 -3.5 two-component system response regulator OmpR compare
DDA3937_RS01600 -1.8 -7.1 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS19015 -1.8 -6.1 glucose-6-phosphate isomerase compare
DDA3937_RS03300 -1.8 -1.2 site-specific tyrosine recombinase XerD compare
DDA3937_RS20770 -1.8 -2.5 VOC family protein compare
DDA3937_RS13930 -1.8 -2.6 transposase compare
DDA3937_RS15635 -1.8 -2.5 nitrogen regulatory protein P-II compare
DDA3937_RS00130 -1.8 -6.1 nitrogen regulation protein NR(II) compare
DDA3937_RS17830 -1.7 -1.3 DeoR/GlpR transcriptional regulator compare
DDA3937_RS00640 -1.7 -1.0 cell division ATP-binding protein FtsE compare
DDA3937_RS19930 -1.7 -3.4 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS06040 -1.7 -0.9 DnaA inactivator Hda compare
DDA3937_RS10400 -1.7 -3.0 YciU family protein compare
DDA3937_RS11875 -1.6 -2.6 AAA family ATPase compare
DDA3937_RS02660 -1.6 -4.8 RNA-directed DNA polymerase compare
DDA3937_RS05150 -1.6 -4.3 sigma E protease regulator RseP compare
DDA3937_RS01695 -1.6 -2.7 divisome-associated lipoprotein YraP compare
DDA3937_RS20535 -1.6 -8.6 orotate phosphoribosyltransferase compare
DDA3937_RS06355 -1.6 -5.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS11500 -1.6 -5.2 two-component system response regulator PhoP compare
DDA3937_RS12525 -1.6 -3.8 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS05050 -1.6 -4.3 transcriptional regulator GcvA compare
DDA3937_RS06350 -1.6 -3.6 replication initiation negative regulator SeqA compare
DDA3937_RS09825 -1.6 -3.7 DUF496 family protein compare
DDA3937_RS10295 -1.6 -3.7 NAD(P)H nitroreductase compare
DDA3937_RS19140 -1.6 -5.3 Trk system potassium transporter TrkA compare
DDA3937_RS15340 -1.6 -1.7 hydroxyethylthiazole kinase compare
DDA3937_RS06215 -1.5 -3.2 glutamate/aspartate ABC transporter permease GltK compare
DDA3937_RS05695 -1.5 -1.8 P-II family nitrogen regulator compare
DDA3937_RS14440 -1.5 -6.3 colicin V production protein compare
DDA3937_RS04635 -1.5 -6.4 multidrug efflux MFS transporter compare
DDA3937_RS10170 -1.5 -2.2 non-heme ferritin compare
DDA3937_RS02345 -1.5 -2.3 hypothetical protein compare
DDA3937_RS06900 -1.5 -1.7 hypothetical protein compare
DDA3937_RS05755 -1.5 -1.9 pleiotropic regulatory protein RsmS compare
DDA3937_RS14185 -1.5 -2.2 glutamine amidotransferase compare
DDA3937_RS21990 -1.5 -2.1 hypothetical protein compare
DDA3937_RS14925 -1.5 -4.4 sugar ABC transporter permease compare
DDA3937_RS06025 -1.5 -6.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS07420 -1.4 -3.5 DUF2442 domain-containing protein compare
DDA3937_RS18395 -1.4 -3.7 transaldolase compare
DDA3937_RS17395 -1.4 -2.1 FCD domain-containing protein compare
DDA3937_RS12535 -1.4 -2.7 LapA family protein compare
DDA3937_RS19135 -1.4 -4.8 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
DDA3937_RS16470 -1.4 -1.4 hypothetical protein compare
DDA3937_RS23395 -1.4 -5.7 hypothetical protein compare
DDA3937_RS00155 -1.4 -4.9 fatty acid biosynthesis protein FabY compare
DDA3937_RS02150 -1.4 -1.1 AAA family ATPase compare
DDA3937_RS14435 -1.4 -9.8 amidophosphoribosyltransferase compare
DDA3937_RS21515 -1.4 -4.0 ATP-grasp domain-containing protein compare
DDA3937_RS15225 -1.4 -1.5 YccF domain-containing protein compare
DDA3937_RS12490 -1.4 -8.8 exoribonuclease II compare
DDA3937_RS14625 -1.4 -4.2 phospholipid-binding lipoprotein MlaA compare
DDA3937_RS02050 -1.4 -2.3 helix-turn-helix domain-containing protein compare
DDA3937_RS23400 -1.4 -1.6 hypothetical protein compare
DDA3937_RS11990 -1.4 -3.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
DDA3937_RS05045 -1.4 -1.8 YgdI/YgdR family lipoprotein compare
DDA3937_RS01755 -1.4 -6.1 3',5'-cyclic-AMP phosphodiesterase compare
DDA3937_RS21605 -1.4 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS03690 -1.4 -2.7 AAA family ATPase compare
DDA3937_RS18560 -1.3 -2.3 glutathione synthase compare
DDA3937_RS11505 -1.3 -6.0 two-component system sensor histidine kinase PhoQ compare
DDA3937_RS17840 -1.3 -2.4 four-carbon acid sugar kinase family protein compare
DDA3937_RS04420 -1.3 -3.1 Dyp-type peroxidase compare
DDA3937_RS21675 -1.3 -1.1 DUF4225 domain-containing protein compare
DDA3937_RS12440 -1.3 -3.3 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS15655 -1.3 -9.5 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS15275 -1.3 -5.0 multidrug transporter subunit MdtD compare
DDA3937_RS02515 -1.3 -3.6 alkyl hydroperoxide reductase subunit C compare
DDA3937_RS17310 -1.3 -4.1 YggT family protein compare
DDA3937_RS13175 -1.3 -1.9 DNA damage-inducible protein I compare
DDA3937_RS23440 -1.3 -1.8 hypothetical protein compare
DDA3937_RS00925 -1.3 -3.1 cell division protein FtsN compare
DDA3937_RS01390 -1.3 -1.7 YhdT family protein compare
DDA3937_RS09095 -1.3 -0.9 AlpA family phage regulatory protein compare
DDA3937_RS02550 -1.3 -2.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DDA3937_RS14530 -1.3 -2.4 AzlD domain-containing protein compare
DDA3937_RS10460 -1.3 -3.2 tryptophan synthase subunit alpha compare
DDA3937_RS00915 -1.3 -2.6 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS10205 -1.2 -2.3 hypothetical protein compare
DDA3937_RS01220 -1.2 -7.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS08895 -1.2 -3.6 ABC transporter ATP-binding protein compare
DDA3937_RS15240 -1.2 -2.0 cell division inhibitor SulA compare
DDA3937_RS06655 -1.2 -4.3 6-phosphogluconolactonase compare
DDA3937_RS18615 -1.2 -0.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS11035 -1.2 -2.5 redox-regulated ATPase YchF compare
DDA3937_RS23075 -1.2 -2.0 hypothetical protein compare
DDA3937_RS01565 -1.2 -3.9 phospholipid ABC transporter ATP-binding protein MlaF compare
DDA3937_RS05670 -1.2 -2.0 7-cyano-7-deazaguanine synthase QueC compare
DDA3937_RS10495 -1.2 -2.9 threonylcarbamoyl-AMP synthase compare
DDA3937_RS23525 -1.2 -2.6 integrase compare
DDA3937_RS21310 -1.2 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS03545 -1.2 -2.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS07795 -1.2 -1.0 GNAT family N-acetyltransferase compare
DDA3937_RS17315 -1.2 -2.7 YggU family protein compare
DDA3937_RS07980 -1.2 -1.1 ABC transporter permease subunit compare
DDA3937_RS08815 -1.2 -1.2 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS07690 -1.2 -2.9 type I-C CRISPR-associated protein Cas7/Csd2 compare
DDA3937_RS21445 -1.2 -2.2 ABC transporter substrate-binding protein compare
DDA3937_RS19880 -1.2 -3.5 DNA helicase II compare
DDA3937_RS10430 -1.2 -1.4 acyl-CoA thioester hydrolase YciA compare
DDA3937_RS04315 -1.2 -1.7 RnfH family protein compare
DDA3937_RS14675 -1.2 -1.5 ABC transporter ATP-binding protein compare
DDA3937_RS01285 -1.2 -5.8 amino acid ABC transporter substrate-binding protein compare
DDA3937_RS06050 -1.1 -3.2 M48 family metallopeptidase compare
DDA3937_RS01605 -1.1 -2.6 serine endoprotease DegQ compare
DDA3937_RS02020 -1.1 -4.9 DEAD/DEAH box helicase compare
DDA3937_RS16050 -1.1 -1.1 ribonuclease HI compare
DDA3937_RS04680 -1.1 -1.6 TIGR00645 family protein compare
DDA3937_RS09010 -1.1 -1.7 transposase compare
DDA3937_RS18445 -1.1 -2.2 inosine/xanthosine triphosphatase compare
DDA3937_RS03965 -1.1 -2.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS01575 -1.1 -5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
DDA3937_RS15150 -1.1 -4.1 polyphosphate kinase 1 compare
DDA3937_RS06525 -1.1 -4.2 cell division protein CpoB compare


Specific Phenotypes

For 12 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms