Experiment setATCH146 for Dickeya dadantii 3937

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PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS05160 -4.7 -1.8 molecular chaperone Skp compare
DDA3937_RS04140 -4.3 -1.4 hypothetical protein compare
DDA3937_RS17830 -4.2 -1.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS02280 -3.5 -2.3 chorismate mutase compare
DDA3937_RS02685 -3.4 -2.3 hypothetical protein compare
DDA3937_RS11210 -3.3 -3.8 septum site-determining protein MinD compare
DDA3937_RS04340 -3.2 -10.6 Nramp family divalent metal transporter compare
DDA3937_RS16595 -3.2 -1.6 acyl-CoA dehydrogenase FadE compare
DDA3937_RS18080 -3.2 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS03285 -3.1 -2.0 protein YgfX compare
DDA3937_RS08965 -3.1 -1.4 protease inhibitor I42 family protein compare
DDA3937_RS23045 -3.1 -1.2 stress response protein AzuC compare
DDA3937_RS06100 -3.0 -1.4 M15 family metallopeptidase compare
DDA3937_RS11365 -2.8 -1.8 oligogalacturonate-specific porin KdgM compare
DDA3937_RS00025 -2.7 -18.9 low affinity potassium transporter Kup compare
DDA3937_RS03095 -2.7 -10.3 lipoprotein NlpI compare
DDA3937_RS00845 -2.7 -1.4 6-phosphofructokinase compare
DDA3937_RS20660 -2.7 -2.7 helix-turn-helix transcriptional regulator compare
DDA3937_RS12445 -2.7 -1.3 peptide ABC transporter permease SapB compare
DDA3937_RS04820 -2.7 -2.2 integrase compare
DDA3937_RS17155 -2.6 -10.6 translocation/assembly module TamB compare
DDA3937_RS09770 -2.6 -1.5 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS06805 -2.6 -14.2 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS16840 -2.6 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS06795 -2.6 -3.4 UTP--glucose-1-phosphate uridylyltransferase compare
DDA3937_RS16245 -2.6 -1.6 recombinase RecA compare
DDA3937_RS19930 -2.5 -3.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS17160 -2.5 -9.4 outer membrane protein assembly factor compare
DDA3937_RS19510 -2.5 -2.1 peptidylprolyl isomerase A compare
DDA3937_RS01770 -2.5 -7.8 LysR family transcriptional regulator compare
DDA3937_RS04130 -2.4 -1.4 hypothetical protein compare
DDA3937_RS14910 -2.4 -12.2 beta-galactosidase compare
DDA3937_RS04420 -2.4 -4.7 Dyp-type peroxidase compare
DDA3937_RS00970 -2.4 -3.2 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS15765 -2.4 -15.3 RNA polymerase sigma factor RpoE compare
DDA3937_RS13175 -2.4 -1.9 DNA damage-inducible protein I compare
DDA3937_RS10725 -2.4 -2.3 acyltransferase family protein compare
DDA3937_RS21265 -2.3 -9.2 oligopeptidase A compare
DDA3937_RS21965 -2.3 -1.0 helix-turn-helix domain-containing protein compare
DDA3937_RS18445 -2.3 -5.7 inosine/xanthosine triphosphatase compare
DDA3937_RS06180 -2.3 -2.6 ribosome silencing factor compare
DDA3937_RS23305 -2.2 -1.7 hypothetical protein compare
DDA3937_RS01650 -2.2 -5.8 ClpXP protease specificity-enhancing factor compare
DDA3937_RS20700 -2.2 -1.1 hypothetical protein compare
DDA3937_RS22435 -2.2 -1.5 AlpA family transcriptional regulator compare
DDA3937_RS06360 -2.2 -1.4 EamA family transporter compare
DDA3937_RS01515 -2.1 -9.8 RNase adapter RapZ compare
DDA3937_RS01775 -2.1 -6.0 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS19620 -2.1 -3.6 two-component system response regulator OmpR compare
DDA3937_RS02160 -2.1 -1.5 transketolase compare
DDA3937_RS10045 -2.1 -7.8 MAPEG family protein compare
DDA3937_RS08145 -2.1 -3.1 metal ABC transporter permease compare
DDA3937_RS10435 -2.0 -1.2 septation protein A compare
DDA3937_RS11715 -2.0 -4.5 hypothetical protein compare
DDA3937_RS03180 -2.0 -2.5 ribosomal protein S18-alanine N-acetyltransferase compare
DDA3937_RS15910 -2.0 -1.4 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS02545 -2.0 -5.4 heavy metal translocating P-type ATPase compare
DDA3937_RS10480 -2.0 -2.0 glutamine amidotransferase compare
DDA3937_RS11965 -2.0 -9.2 carboxy terminal-processing peptidase compare
DDA3937_RS06755 -2.0 -3.2 glycosyltransferase family 2 protein compare
DDA3937_RS18610 -2.0 -7.2 RNA chaperone Hfq compare
DDA3937_RS01520 -2.0 -6.5 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS07175 -2.0 -1.2 LysR family transcriptional regulator compare
DDA3937_RS04960 -1.9 -2.1 thymidylate synthase compare
DDA3937_RS03565 -1.9 -4.5 MarR family transcriptional regulator compare
DDA3937_RS20265 -1.9 -0.7 YeeE/YedE family protein compare
DDA3937_RS06350 -1.9 -4.7 replication initiation negative regulator SeqA compare
DDA3937_RS01600 -1.9 -8.1 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS04655 -1.9 -5.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DDA3937_RS14595 -1.9 -5.7 phosphohistidine phosphatase SixA compare
DDA3937_RS12030 -1.8 -1.4 hypothetical protein compare
DDA3937_RS13965 -1.8 -1.9 CcdB family protein compare
DDA3937_RS01570 -1.8 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS14625 -1.8 -5.8 phospholipid-binding lipoprotein MlaA compare
DDA3937_RS09120 -1.8 -1.1 YejL family protein compare
DDA3937_RS11970 -1.8 -3.1 RNA chaperone ProQ compare
DDA3937_RS14340 -1.8 -4.3 transcriptional regulator LrhA compare
DDA3937_RS01325 -1.8 -2.8 hypothetical protein compare
DDA3937_RS11125 -1.8 -1.6 hypothetical protein compare
DDA3937_RS12855 -1.8 -5.8 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS16060 -1.8 -8.8 hydroxyacylglutathione hydrolase compare
DDA3937_RS19015 -1.8 -7.4 glucose-6-phosphate isomerase compare
DDA3937_RS10170 -1.8 -3.7 non-heme ferritin compare
DDA3937_RS09170 -1.7 -3.1 hypothetical protein compare
DDA3937_RS08535 -1.7 -2.8 glyoxalase/bleomycin resistance/dioxygenase family protein compare
DDA3937_RS05050 -1.7 -3.5 transcriptional regulator GcvA compare
DDA3937_RS06075 -1.7 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS14870 -1.7 -1.6 YjfB family protein compare
DDA3937_RS23085 -1.7 -2.9 hypothetical protein compare
DDA3937_RS10740 -1.7 -2.6 ClbS/DfsB family four-helix bundle protein compare
DDA3937_RS18535 -1.7 -6.0 biosynthetic arginine decarboxylase compare
DDA3937_RS06760 -1.7 -2.7 EpsG family protein compare
DDA3937_RS14440 -1.7 -8.3 colicin V production protein compare
DDA3937_RS14470 -1.7 -2.5 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS06870 -1.7 -2.0 iron ABC transporter permease compare
DDA3937_RS06355 -1.7 -6.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS07305 -1.7 -4.3 MarR family transcriptional regulator compare
DDA3937_RS15915 -1.7 -2.7 bifunctional glycosyl transferase/transpeptidase compare
DDA3937_RS18190 -1.7 -2.0 hypothetical protein compare
DDA3937_RS19690 -1.6 -1.9 YhcH/YjgK/YiaL family protein compare
DDA3937_RS03785 -1.6 -3.9 DoxX family protein compare
DDA3937_RS05865 -1.6 -2.2 2Fe-2S ferredoxin-like protein compare
DDA3937_RS12170 -1.6 -1.2 hypothetical protein compare
DDA3937_RS10985 -1.6 -2.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS03890 -1.6 -3.2 hypothetical protein compare
DDA3937_RS11870 -1.6 -3.2 SIR2 family protein compare
DDA3937_RS13345 -1.6 -5.0 flagellar filament capping protein FliD compare
DDA3937_RS14920 -1.6 -3.5 sugar ABC transporter permease compare
DDA3937_RS00900 -1.5 -4.0 cell division protein ZapB compare
DDA3937_RS02445 -1.5 -1.2 peptide chain release factor 3 compare
DDA3937_RS11205 -1.5 -3.6 septum site-determining protein MinC compare
DDA3937_RS15420 -1.5 -4.8 IMP dehydrogenase compare
DDA3937_RS13170 -1.5 -5.0 dihydroorotase compare
DDA3937_RS22350 -1.5 -4.9 hypothetical protein compare
DDA3937_RS03400 -1.5 -1.7 hypothetical protein compare
DDA3937_RS01565 -1.5 -5.1 phospholipid ABC transporter ATP-binding protein MlaF compare
DDA3937_RS08815 -1.5 -1.6 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS16685 -1.5 -1.3 oxalurate catabolism protein HpxZ compare
DDA3937_RS21045 -1.5 -8.7 ROK family transcriptional regulator compare
DDA3937_RS23345 -1.4 -2.4 hypothetical protein compare
DDA3937_RS02665 -1.4 -1.2 type II toxin-antitoxin system toxin CcdB compare
DDA3937_RS10440 -1.4 -2.1 UPF0259 family protein compare
DDA3937_RS08440 -1.4 -3.0 DUF3168 domain-containing protein compare
DDA3937_RS07235 -1.4 -1.1 response regulator transcription factor compare
DDA3937_RS14465 -1.4 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS10210 -1.4 -1.4 GlsB/YeaQ/YmgE family stress response membrane protein compare
DDA3937_RS16195 -1.4 -2.3 glutamate--cysteine ligase compare
DDA3937_RS06540 -1.4 -4.8 DUF554 domain-containing protein compare
DDA3937_RS06050 -1.4 -4.0 M48 family metallopeptidase compare
DDA3937_RS01580 -1.4 -5.9 phospholipid-binding protein MlaC compare
DDA3937_RS02915 -1.4 -3.2 TetR/AcrR family transcriptional regulator compare
DDA3937_RS02025 -1.4 -3.1 DUF1837 domain-containing protein compare
DDA3937_RS00290 -1.4 -1.6 DUF1471 domain-containing protein compare
DDA3937_RS21270 -1.4 -3.7 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
DDA3937_RS13475 -1.4 -3.3 flagellar basal body rod protein FlgC compare
DDA3937_RS02725 -1.4 -0.9 FxsA family protein compare
DDA3937_RS18195 -1.4 -3.0 hypothetical protein compare
DDA3937_RS13930 -1.4 -2.3 transposase compare
DDA3937_RS04320 -1.4 -5.4 outer membrane protein assembly factor BamE compare
DDA3937_RS09575 -1.4 -0.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS12350 -1.4 -1.6 thiol peroxidase compare
DDA3937_RS13165 -1.4 -2.5 antibiotic biosynthesis monooxygenase compare
DDA3937_RS00750 -1.4 -2.0 DUF2756 domain-containing protein compare
DDA3937_RS10500 -1.3 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS17995 -1.3 -1.7 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS12490 -1.3 -9.2 exoribonuclease II compare
DDA3937_RS10400 -1.3 -3.0 YciU family protein compare
DDA3937_RS01755 -1.3 -6.2 3',5'-cyclic-AMP phosphodiesterase compare
DDA3937_RS09590 -1.3 -3.0 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS19670 -1.3 -2.1 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS15745 -1.3 -3.7 elongation factor 4 compare
DDA3937_RS10445 -1.3 -1.4 hypothetical protein compare
DDA3937_RS00130 -1.3 -4.8 nitrogen regulation protein NR(II) compare
DDA3937_RS06475 -1.3 -1.6 succinate--CoA ligase subunit alpha compare
DDA3937_RS22370 -1.3 -4.3 His-Xaa-Ser repeat protein HxsA compare
DDA3937_RS06655 -1.3 -4.5 6-phosphogluconolactonase compare
DDA3937_RS09465 -1.3 -6.3 putrescine ABC transporter ATP-binding subunit PotG compare
DDA3937_RS11505 -1.3 -7.2 two-component system sensor histidine kinase PhoQ compare
DDA3937_RS05665 -1.3 -2.9 helix-hairpin-helix domain-containing protein compare
DDA3937_RS15150 -1.3 -6.4 polyphosphate kinase 1 compare
DDA3937_RS23340 -1.3 -1.3 ilvB operon leader peptide IvbL compare
DDA3937_RS19145 -1.3 -3.9 large-conductance mechanosensitive channel protein MscL compare
DDA3937_RS12010 -1.3 -1.1 hypothetical protein compare
DDA3937_RS09945 -1.3 -1.9 LysR family transcriptional regulator compare
DDA3937_RS10135 -1.3 -3.5 glucose-6-phosphate dehydrogenase compare
DDA3937_RS02815 -1.3 -1.6 transcriptional regulator ExuR compare
DDA3937_RS12280 -1.3 -0.7 YnbE family lipoprotein compare
DDA3937_RS00805 -1.3 -1.9 phage tail assembly chaperone compare
DDA3937_RS15455 -1.3 -1.6 YfgM family protein compare
DDA3937_RS07785 -1.3 -1.1 OsmC family protein compare
DDA3937_RS10715 -1.3 -4.5 GNAT family N-acetyltransferase compare
DDA3937_RS07575 -1.3 -1.7 hypothetical protein compare
DDA3937_RS15210 -1.3 -1.7 DUF2057 family protein compare
DDA3937_RS11875 -1.3 -2.3 AAA family ATPase compare
DDA3937_RS12690 -1.3 -4.1 type II secretion system F family protein compare
DDA3937_RS10575 -1.3 -2.4 electron transport complex subunit RsxA compare
DDA3937_RS18755 -1.2 -1.7 organic hydroperoxide resistance protein compare
DDA3937_RS21605 -1.2 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS00125 -1.2 -1.4 nitrogen regulation protein NR(I) compare
DDA3937_RS07930 -1.2 -1.3 TonB family protein compare
DDA3937_RS11500 -1.2 -3.8 two-component system response regulator PhoP compare
DDA3937_RS02865 -1.2 -3.3 transcriptional regulator UhpA compare
DDA3937_RS08160 -1.2 -3.9 LysR family transcriptional regulator compare
DDA3937_RS11725 -1.2 -1.3 Hcp family type VI secretion system effector compare
DDA3937_RS04315 -1.2 -1.9 RnfH family protein compare
DDA3937_RS23355 -1.2 -4.2 hypothetical protein compare
DDA3937_RS01575 -1.2 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
DDA3937_RS19640 -1.2 -1.7 hypothetical protein compare
DDA3937_RS22190 -1.2 -2.6 YkgJ family cysteine cluster protein compare
DDA3937_RS04125 -1.2 -2.8 acetyltransferase compare
DDA3937_RS10060 -1.2 -1.0 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS20535 -1.2 -5.7 orotate phosphoribosyltransferase compare
DDA3937_RS12800 -1.2 -2.3 AI-2E family transporter YdiK compare
DDA3937_RS14435 -1.2 -8.6 amidophosphoribosyltransferase compare
DDA3937_RS04550 -1.2 -2.4 multidrug/biocide efflux PACE transporter compare
DDA3937_RS02550 -1.2 -3.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DDA3937_RS01525 -1.2 -4.3 ribosome hibernation promoting factor compare
DDA3937_RS06040 -1.2 -1.0 DnaA inactivator Hda compare
DDA3937_RS13920 -1.2 -0.9 CcdB family protein compare
DDA3937_RS13180 -1.2 -3.2 biofilm formation regulator BssS compare


Specific Phenotypes

For 9 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms