Experiment setATCH145 for Dickeya dadantii 3937

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PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS16650 -5.2 -1.7 amino acid ABC transporter permease compare
DDA3937_RS19615 -4.2 -5.0 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS03285 -4.1 -2.0 protein YgfX compare
DDA3937_RS19670 -3.9 -3.0 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS13495 -3.9 -3.0 flagellar export chaperone FlgN compare
DDA3937_RS09770 -3.8 -1.2 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS22080 -3.7 -1.0 transposase compare
DDA3937_RS08395 -3.5 -1.8 DUF3800 domain-containing protein compare
DDA3937_RS12010 -3.5 -1.3 hypothetical protein compare
DDA3937_RS11970 -3.3 -4.0 RNA chaperone ProQ compare
DDA3937_RS13175 -3.3 -2.3 DNA damage-inducible protein I compare
DDA3937_RS14595 -3.2 -5.4 phosphohistidine phosphatase SixA compare
DDA3937_RS16685 -3.2 -1.8 oxalurate catabolism protein HpxZ compare
DDA3937_RS09575 -3.2 -0.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS17830 -3.1 -1.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS10045 -3.1 -9.3 MAPEG family protein compare
DDA3937_RS00640 -3.1 -2.2 cell division ATP-binding protein FtsE compare
DDA3937_RS02790 -3.0 -1.3 YqjK-like family protein compare
DDA3937_RS13490 -3.0 -1.1 anti-sigma-28 factor FlgM compare
DDA3937_RS01770 -3.0 -9.4 LysR family transcriptional regulator compare
DDA3937_RS00025 -3.0 -19.5 low affinity potassium transporter Kup compare
DDA3937_RS07335 -2.9 -2.1 DUF1971 domain-containing protein compare
DDA3937_RS14095 -2.9 -1.0 ABC transporter ATP-binding protein compare
DDA3937_RS09120 -2.9 -1.0 YejL family protein compare
DDA3937_RS02325 -2.9 -1.1 HTH-type transcriptional activator RhaS compare
DDA3937_RS23305 -2.9 -2.0 hypothetical protein compare
DDA3937_RS01520 -2.9 -6.4 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS00645 -2.8 -8.8 cell division protein FtsX compare
DDA3937_RS23495 -2.8 -1.5 hypothetical protein compare
DDA3937_RS15765 -2.8 -14.5 RNA polymerase sigma factor RpoE compare
DDA3937_RS10725 -2.8 -2.5 acyltransferase family protein compare
DDA3937_RS17515 -2.7 -1.4 DUF1471 domain-containing protein compare
DDA3937_RS00835 -2.7 -1.4 2TM domain-containing protein compare
DDA3937_RS23020 -2.7 -0.7 hypothetical protein compare
DDA3937_RS09195 -2.7 -2.7 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS14775 -2.7 -1.0 type II secretion system minor pseudopilin GspI compare
DDA3937_RS11685 -2.7 -1.2 HrpP protein compare
DDA3937_RS09070 -2.6 -2.1 hypothetical protein compare
DDA3937_RS02545 -2.6 -9.3 heavy metal translocating P-type ATPase compare
DDA3937_RS03300 -2.6 -1.1 site-specific tyrosine recombinase XerD compare
DDA3937_RS11965 -2.6 -10.7 carboxy terminal-processing peptidase compare
DDA3937_RS23190 -2.6 -1.3 hypothetical protein compare
DDA3937_RS19620 -2.6 -3.9 two-component system response regulator OmpR compare
DDA3937_RS07005 -2.6 -1.7 type I addiction module toxin, SymE family compare
DDA3937_RS03095 -2.5 -9.3 lipoprotein NlpI compare
DDA3937_RS12425 -2.5 -1.3 phage shock protein PspA compare
DDA3937_RS14470 -2.5 -2.4 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS12280 -2.5 -0.9 YnbE family lipoprotein compare
DDA3937_RS00970 -2.5 -2.4 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS06760 -2.5 -4.4 EpsG family protein compare
DDA3937_RS10135 -2.4 -6.9 glucose-6-phosphate dehydrogenase compare
DDA3937_RS14625 -2.4 -8.2 phospholipid-binding lipoprotein MlaA compare
DDA3937_RS10580 -2.4 -1.6 transcription modulator YdgT compare
DDA3937_RS06805 -2.4 -10.7 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS19440 -2.4 -1.4 OsmC family protein compare
DDA3937_RS09825 -2.3 -5.2 DUF496 family protein compare
DDA3937_RS17160 -2.3 -8.7 outer membrane protein assembly factor compare
DDA3937_RS01600 -2.3 -10.4 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS09015 -2.2 -2.1 hypothetical protein compare
DDA3937_RS01775 -2.2 -4.6 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS01515 -2.2 -9.0 RNase adapter RapZ compare
DDA3937_RS14465 -2.2 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS21265 -2.2 -8.3 oligopeptidase A compare
DDA3937_RS14205 -2.2 -4.6 hydrogenase expression/formation protein HypE compare
DDA3937_RS01570 -2.2 -6.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS00900 -2.2 -6.1 cell division protein ZapB compare
DDA3937_RS15545 -2.2 -1.0 cysteine desulfurase compare
DDA3937_RS04420 -2.2 -5.3 Dyp-type peroxidase compare
DDA3937_RS15420 -2.2 -6.0 IMP dehydrogenase compare
DDA3937_RS17770 -2.2 -1.6 metal ABC transporter permease compare
DDA3937_RS05775 -2.2 -1.9 adenine phosphoribosyltransferase compare
DDA3937_RS14910 -2.2 -9.6 beta-galactosidase compare
DDA3937_RS18200 -2.2 -4.9 hypothetical protein compare
DDA3937_RS16840 -2.1 -1.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS17155 -2.1 -8.1 translocation/assembly module TamB compare
DDA3937_RS04340 -2.1 -5.9 Nramp family divalent metal transporter compare
DDA3937_RS21445 -2.1 -2.9 ABC transporter substrate-binding protein compare
DDA3937_RS09010 -2.0 -2.8 transposase compare
DDA3937_RS06770 -2.0 -1.5 oligosaccharide flippase family protein compare
DDA3937_RS18610 -2.0 -6.3 RNA chaperone Hfq compare
DDA3937_RS05595 -2.0 -1.1 protoheme IX farnesyltransferase compare
DDA3937_RS03565 -2.0 -4.2 MarR family transcriptional regulator compare
DDA3937_RS20265 -2.0 -0.7 YeeE/YedE family protein compare
DDA3937_RS07580 -2.0 -6.5 DUF3916 domain-containing protein compare
DDA3937_RS15405 -1.9 -2.6 hypothetical protein compare
DDA3937_RS06050 -1.9 -5.4 M48 family metallopeptidase compare
DDA3937_RS16060 -1.8 -8.5 hydroxyacylglutathione hydrolase compare
DDA3937_RS20190 -1.8 -1.4 HTH-type transcriptional regulator HdfR compare
DDA3937_RS02265 -1.8 -1.9 AAA family ATPase compare
DDA3937_RS02550 -1.8 -3.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DDA3937_RS13920 -1.8 -1.1 CcdB family protein compare
DDA3937_RS11125 -1.8 -1.8 hypothetical protein compare
DDA3937_RS23235 -1.8 -2.3 hypothetical protein compare
DDA3937_RS21045 -1.8 -8.8 ROK family transcriptional regulator compare
DDA3937_RS13630 -1.8 -2.5 hypothetical protein compare
DDA3937_RS06655 -1.7 -5.8 6-phosphogluconolactonase compare
DDA3937_RS21270 -1.7 -3.7 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
DDA3937_RS06355 -1.7 -6.8 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS05150 -1.7 -3.3 sigma E protease regulator RseP compare
DDA3937_RS10515 -1.7 -6.6 protease SohB compare
DDA3937_RS13710 -1.7 -2.7 DUF2594 family protein compare
DDA3937_RS19605 -1.7 -2.5 Hsp33 family molecular chaperone HslO compare
DDA3937_RS21905 -1.7 -5.0 restriction endonuclease compare
DDA3937_RS01580 -1.7 -7.7 phospholipid-binding protein MlaC compare
DDA3937_RS04070 -1.7 -1.3 helix-turn-helix transcriptional regulator compare
DDA3937_RS11365 -1.7 -1.5 oligogalacturonate-specific porin KdgM compare
DDA3937_RS01605 -1.7 -3.5 serine endoprotease DegQ compare
DDA3937_RS10210 -1.7 -1.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
DDA3937_RS19015 -1.7 -7.1 glucose-6-phosphate isomerase compare
DDA3937_RS00130 -1.7 -3.8 nitrogen regulation protein NR(II) compare
DDA3937_RS02855 -1.7 -1.0 hypothetical protein compare
DDA3937_RS12600 -1.6 -2.0 lactoylglutathione lyase compare
DDA3937_RS12445 -1.6 -1.2 peptide ABC transporter permease SapB compare
DDA3937_RS06795 -1.6 -2.1 UTP--glucose-1-phosphate uridylyltransferase compare
DDA3937_RS01715 -1.6 -4.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
DDA3937_RS09620 -1.6 -3.1 glutathione S-transferase compare
DDA3937_RS11615 -1.6 -1.8 type III secretion system stator protein SctL compare
DDA3937_RS00625 -1.6 -3.4 DUF1145 family protein compare
DDA3937_RS02410 -1.6 -1.5 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS01755 -1.6 -7.8 3',5'-cyclic-AMP phosphodiesterase compare
DDA3937_RS11210 -1.6 -2.5 septum site-determining protein MinD compare
DDA3937_RS12525 -1.6 -4.7 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS08815 -1.6 -1.0 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS05955 -1.6 -3.3 SDR family oxidoreductase compare
DDA3937_RS01575 -1.6 -6.5 outer membrane lipid asymmetry maintenance protein MlaD compare
DDA3937_RS10645 -1.6 -3.3 YdgA family protein compare
DDA3937_RS21675 -1.5 -2.2 DUF4225 domain-containing protein compare
DDA3937_RS13475 -1.5 -3.7 flagellar basal body rod protein FlgC compare
DDA3937_RS15655 -1.5 -10.4 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS15365 -1.5 -2.2 VOC family protein compare
DDA3937_RS20535 -1.5 -7.4 orotate phosphoribosyltransferase compare
DDA3937_RS11090 -1.5 -2.2 CesT family type III secretion system chaperone compare
DDA3937_RS22340 -1.5 -1.2 EexN family lipoprotein compare
DDA3937_RS11910 -1.5 -2.4 respiratory nitrate reductase subunit gamma compare
DDA3937_RS22515 -1.5 -2.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS01960 -1.5 -2.5 GNAT family N-acetyltransferase compare
DDA3937_RS12440 -1.5 -3.8 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS00125 -1.5 -1.4 nitrogen regulation protein NR(I) compare
DDA3937_RS10370 -1.5 -2.4 YchE family NAAT transporter compare
DDA3937_RS19930 -1.4 -3.1 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS08290 -1.4 -2.2 VOC family protein compare
DDA3937_RS03265 -1.4 -3.0 HD domain-containing protein compare
DDA3937_RS06215 -1.4 -2.8 glutamate/aspartate ABC transporter permease GltK compare
DDA3937_RS12800 -1.4 -3.1 AI-2E family transporter YdiK compare
DDA3937_RS08415 -1.4 -1.4 IS3 family transposase compare
DDA3937_RS21965 -1.4 -0.7 helix-turn-helix domain-containing protein compare
DDA3937_RS19135 -1.4 -5.6 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
DDA3937_RS02515 -1.4 -4.3 alkyl hydroperoxide reductase subunit C compare
DDA3937_RS17305 -1.4 -2.4 pyrroline-5-carboxylate reductase compare
DDA3937_RS14440 -1.4 -5.7 colicin V production protein compare
DDA3937_RS18395 -1.4 -4.5 transaldolase compare
DDA3937_RS18095 -1.4 -2.4 catabolite repressor/activator compare
DDA3937_RS21230 -1.4 -4.3 GntR family transcriptional regulator compare
DDA3937_RS13760 -1.4 -2.1 DUF1795 domain-containing protein compare
DDA3937_RS01065 -1.4 -0.6 elongation factor Tu compare
DDA3937_RS18310 -1.4 -6.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS19640 -1.3 -2.7 hypothetical protein compare
DDA3937_RS18445 -1.3 -4.1 inosine/xanthosine triphosphatase compare
DDA3937_RS01925 -1.3 -6.7 aspartate carbamoyltransferase compare
DDA3937_RS03135 -1.3 -3.8 deoxyribose-phosphate aldolase compare
DDA3937_RS12095 -1.3 -1.2 recombinase family protein compare
DDA3937_RS13170 -1.3 -3.8 dihydroorotase compare
DDA3937_RS15350 -1.3 -1.9 amino acid ABC transporter permease compare
DDA3937_RS19635 -1.3 -4.1 RNA-binding transcriptional accessory protein compare
DDA3937_RS06025 -1.3 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS14340 -1.3 -3.4 transcriptional regulator LrhA compare
DDA3937_RS12490 -1.3 -8.1 exoribonuclease II compare
DDA3937_RS02865 -1.3 -2.4 transcriptional regulator UhpA compare
DDA3937_RS02880 -1.3 -6.5 hexose-6-phosphate:phosphate antiporter compare
DDA3937_RS10125 -1.3 -2.1 pyruvate kinase compare
DDA3937_RS12430 -1.3 -2.1 phage shock protein operon transcriptional activator compare
DDA3937_RS18190 -1.3 -1.8 hypothetical protein compare
DDA3937_RS11700 -1.3 -0.7 type III secretion system export apparatus subunit SctS compare
DDA3937_RS19780 -1.3 -1.0 gluconokinase compare
DDA3937_RS10675 -1.2 -0.8 ROK family transcriptional regulator compare
DDA3937_RS12855 -1.2 -4.2 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS08365 -1.2 -1.3 hypothetical protein compare
DDA3937_RS03420 -1.2 -1.7 sugar transferase compare
DDA3937_RS09935 -1.2 -2.8 NUDIX domain-containing protein compare
DDA3937_RS00600 -1.2 -1.2 DcrB family lipoprotein compare
DDA3937_RS04705 -1.2 -5.3 SDR family oxidoreductase compare
DDA3937_RS14435 -1.2 -8.6 amidophosphoribosyltransferase compare
DDA3937_RS17010 -1.2 -2.9 nucleoside triphosphate pyrophosphohydrolase compare
DDA3937_RS11035 -1.2 -1.9 redox-regulated ATPase YchF compare
DDA3937_RS04830 -1.2 -1.6 hypothetical protein compare
DDA3937_RS18545 -1.2 -4.5 SprT family zinc-dependent metalloprotease compare
DDA3937_RS22030 -1.2 -1.2 multidrug efflux pump-associated protein, AcrZ family compare
DDA3937_RS09590 -1.2 -3.2 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS10985 -1.2 -1.8 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS07305 -1.2 -2.9 MarR family transcriptional regulator compare
DDA3937_RS01000 -1.2 -2.1 glutamate racemase compare
DDA3937_RS04410 -1.2 -3.7 PAS and helix-turn-helix domain-containing protein compare
DDA3937_RS11445 -1.2 -3.5 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS13520 -1.2 -3.4 chemotaxis response regulator CheY compare
DDA3937_RS05660 -1.2 -5.1 peptidylprolyl isomerase compare
DDA3937_RS17880 -1.2 -2.3 YacL family protein compare
DDA3937_RS20465 -1.2 -3.5 O-antigen ligase family protein compare
DDA3937_RS05470 -1.2 -1.9 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS09370 -1.2 -0.8 GTP cyclohydrolase I FolE compare
DDA3937_RS11180 -1.2 -1.6 fatty acid metabolism transcriptional regulator FadR compare


Specific Phenotypes

For 12 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms