Experiment setATCH145 for Dickeya dadantii 3937

Compare to:

PDB

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS10395 +3.9 34.5 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS10390 +3.9 32.5 ABC transporter ATP-binding protein compare
DDA3937_RS10380 +3.8 32.2 oligopeptide ABC transporter permease OppB compare
DDA3937_RS10385 +3.7 29.7 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10375 +3.6 32.2 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS04215 +3.1 6.2 phage tail protein compare
DDA3937_RS23165 +3.0 9.6 hypothetical protein compare
DDA3937_RS15985 +2.9 13.1 hypoxanthine phosphoribosyltransferase compare
DDA3937_RS18135 +2.8 8.3 siderophore-interacting protein compare
DDA3937_RS21095 +2.7 2.2 DUF1471 domain-containing protein compare
DDA3937_RS07715 +2.7 15.5 TonB-dependent receptor compare
DDA3937_RS20305 +2.6 8.5 Sec-independent protein translocase subunit TatC compare
DDA3937_RS00890 +2.6 17.5 glycerol kinase GlpK compare
DDA3937_RS18585 +2.5 3.7 adenylosuccinate synthase compare
DDA3937_RS20455 +2.5 4.9 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS02720 +2.5 16.4 aspartate ammonia-lyase compare
DDA3937_RS00020 +2.4 17.8 ATPase RavA compare
DDA3937_RS09585 +2.4 4.0 thioredoxin-disulfide reductase compare
DDA3937_RS00895 +2.4 16.1 aquaporin compare
DDA3937_RS00975 +2.4 4.3 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS04235 +2.4 5.4 phage holin family protein compare
DDA3937_RS13145 +2.4 5.8 23S rRNA accumulation protein YceD compare
DDA3937_RS07760 +2.3 7.0 iron ABC transporter permease compare
DDA3937_RS20470 +2.2 11.9 glycosyltransferase family 9 protein compare
DDA3937_RS19915 +2.2 3.0 class I adenylate cyclase compare
DDA3937_RS12230 +2.1 9.3 two-component system response regulator RstA compare
DDA3937_RS00015 +2.1 15.9 ATPase RavA stimulator ViaA compare
DDA3937_RS04220 +2.1 4.5 hypothetical protein compare
DDA3937_RS15720 +2.1 8.8 pyridoxine 5'-phosphate synthase compare
DDA3937_RS14380 +2.1 3.5 acetate kinase compare
DDA3937_RS20110 +2.0 1.9 peptidylprolyl isomerase compare
DDA3937_RS02965 +2.0 3.3 transcriptional regulator ArgR compare
DDA3937_RS19715 +1.9 4.8 thiosulfate sulfurtransferase GlpE compare
DDA3937_RS14475 +1.9 7.2 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS22035 +1.9 2.9 immunity protein RhsIC compare
DDA3937_RS18275 +1.9 13.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS10540 +1.9 2.8 HTH-type transcriptional regulator CysB compare
DDA3937_RS10855 +1.9 2.2 hypothetical protein compare
DDA3937_RS12890 +1.9 9.0 nicotinate phosphoribosyltransferase compare
DDA3937_RS04570 +1.9 2.3 FMN-binding protein compare
DDA3937_RS10420 +1.8 1.7 YciI family protein compare
DDA3937_RS04540 +1.8 14.6 fumarate hydratase compare
DDA3937_RS21420 +1.8 8.0 4'-phosphopantetheinyl transferase compare
DDA3937_RS09515 +1.8 5.0 arginine ABC transporter ATP-binding protein ArtP compare
DDA3937_RS12235 +1.7 8.4 two-component system sensor histidine kinase RstB compare
DDA3937_RS04225 +1.7 6.0 DUF2586 domain-containing protein compare
DDA3937_RS06235 +1.7 8.4 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS07765 +1.7 3.9 ABC transporter ATP-binding protein compare
DDA3937_RS03410 +1.7 12.7 polysaccharide biosynthesis protein compare
DDA3937_RS10410 +1.7 1.2 IS200/IS605 family transposase compare
DDA3937_RS18670 +1.6 4.2 ABC transporter permease compare
DDA3937_RS21245 +1.6 8.1 glutathione-disulfide reductase compare
DDA3937_RS09715 +1.6 1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS10980 +1.6 6.9 tetratricopeptide repeat-containing protein compare
DDA3937_RS22560 +1.6 3.6 membrane protein insertion efficiency factor YidD compare
DDA3937_RS01700 +1.6 6.2 DnaA initiator-associating protein DiaA compare
DDA3937_RS06450 +1.6 13.2 succinate dehydrogenase flavoprotein subunit compare
DDA3937_RS05640 +1.6 8.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS20475 +1.6 2.2 glycosyltransferase family 4 protein compare
DDA3937_RS01915 +1.6 1.7 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS09345 +1.6 1.2 IS200/IS605 family transposase compare
DDA3937_RS18550 +1.6 7.7 deoxyribonuclease I compare
DDA3937_RS15155 +1.6 4.0 exopolyphosphatase compare
DDA3937_RS06685 +1.5 3.0 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS07750 +1.5 2.6 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS10160 +1.5 2.8 copper homeostasis periplasmic binding protein CopC compare
DDA3937_RS01835 +1.5 3.8 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS13740 +1.5 3.5 DUF736 domain-containing protein compare
DDA3937_RS06705 +1.5 8.6 TerC family protein compare
DDA3937_RS18680 +1.5 3.0 GDP-L-fucose synthase compare
DDA3937_RS04140 +1.5 1.7 hypothetical protein compare
DDA3937_RS12520 +1.5 3.8 stress response translation initiation inhibitor YciH compare
DDA3937_RS09510 +1.4 3.1 arginine ABC transporter substrate-binding protein compare
DDA3937_RS14165 +1.4 5.2 formate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS06040 +1.4 1.9 DnaA inactivator Hda compare
DDA3937_RS16110 +1.4 9.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS02150 +1.4 2.1 AAA family ATPase compare
DDA3937_RS02765 +1.4 7.4 zinc uptake transcriptional repressor Zur compare
DDA3937_RS05405 +1.4 2.9 recombination-associated protein RdgC compare
DDA3937_RS08470 +1.4 5.5 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS06625 +1.4 7.7 molybdenum-dependent transcriptional regulator compare
DDA3937_RS04910 +1.4 2.7 YggL family protein compare
DDA3937_RS09075 +1.4 1.5 hypothetical protein compare
DDA3937_RS01550 +1.4 3.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS23250 +1.4 5.3 endolytic transglycosylase MltG compare
DDA3937_RS02705 +1.3 8.7 protein-disulfide reductase DsbD compare
DDA3937_RS19910 +1.3 1.7 iron donor protein CyaY compare
DDA3937_RS05645 +1.3 9.2 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS12240 +1.3 1.4 acid resistance repetitive basic protein Asr compare
DDA3937_RS17150 +1.3 2.1 gamma-glutamylcyclotransferase compare
DDA3937_RS17835 +1.3 5.1 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS15660 +1.3 8.2 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS22175 +1.3 1.7 IS3 family transposase compare
DDA3937_RS00865 +1.3 1.3 triose-phosphate isomerase compare
DDA3937_RS22250 +1.3 1.4 DUF2627 domain-containing protein compare
DDA3937_RS13970 +1.2 1.4 type II toxin-antitoxin system CcdA family antitoxin compare
DDA3937_RS01450 +1.2 9.4 ribonuclease G compare
DDA3937_RS01375 +1.2 3.5 tRNA dihydrouridine synthase DusB compare
DDA3937_RS00845 +1.2 1.3 6-phosphofructokinase compare
DDA3937_RS17930 +1.2 3.3 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
DDA3937_RS20815 +1.2 7.5 two-component system sensor histidine kinase VfmI compare
DDA3937_RS11675 +1.2 2.8 type III secretion system ATPase SctN compare
DDA3937_RS09505 +1.2 5.0 arginine ABC transporter permease ArtQ compare
DDA3937_RS06690 +1.2 6.3 uridine kinase compare
DDA3937_RS14360 +1.2 1.9 sugar phosphatase compare
DDA3937_RS06055 +1.2 3.0 thioredoxin-dependent thiol peroxidase compare
DDA3937_RS16795 +1.2 1.9 YfiM family lipoprotein compare
DDA3937_RS17485 +1.2 1.5 envelope stress response protein PspG compare
DDA3937_RS16085 +1.2 2.2 23S ribosomal RNA compare
DDA3937_RS03990 +1.2 1.8 CopG family transcriptional regulator compare
DDA3937_RS15645 +1.2 3.9 two-component system QseEF-associated lipoprotein QseG compare
DDA3937_RS18615 +1.2 1.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS06445 +1.2 7.5 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS01820 +1.2 2.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS18270 +1.2 4.1 Co2+/Mg2+ efflux protein ApaG compare
DDA3937_RS03355 +1.2 1.4 tRNA-Gly compare
DDA3937_RS07915 +1.2 3.9 ABC transporter permease compare
DDA3937_RS04555 +1.2 1.5 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS03415 +1.2 3.7 NAD-dependent epimerase/dehydratase family protein compare
DDA3937_RS18845 +1.2 4.4 homocitrate synthase compare
DDA3937_RS15945 +1.2 3.6 polynucleotide adenylyltransferase PcnB compare
DDA3937_RS13335 +1.2 1.4 IS200/IS605 family transposase compare
DDA3937_RS14175 +1.2 8.2 formate dehydrogenase-N subunit alpha compare
DDA3937_RS15715 +1.2 1.7 holo-ACP synthase compare
DDA3937_RS16945 +1.2 6.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS22125 +1.1 1.6 conjugal transfer protein TrbI compare
DDA3937_RS09995 +1.1 7.5 ribosomal protein S5-alanine N-acetyltransferase compare
DDA3937_RS10130 +1.1 4.0 MurR/RpiR family transcriptional regulator compare
DDA3937_RS04480 +1.1 4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS07430 +1.1 2.8 HycH family protein compare
DDA3937_RS16915 +1.1 4.6 adenylyl-sulfate kinase compare
DDA3937_RS10650 +1.1 3.3 mannose-6-phosphate isomerase compare
DDA3937_RS14170 +1.1 5.6 formate dehydrogenase subunit beta compare
DDA3937_RS02160 +1.1 1.6 transketolase compare
DDA3937_RS20820 +1.1 3.7 two-component system response regulator VfmH compare
DDA3937_RS00345 +1.1 4.6 inorganic phosphate transporter PitA compare
DDA3937_RS00775 +1.1 2.7 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS04945 +1.1 4.7 RNA pyrophosphohydrolase compare
DDA3937_RS20410 +1.1 2.2 protein-export chaperone SecB compare
DDA3937_RS14940 +1.0 3.4 amidohydrolase compare
DDA3937_RS22355 +1.0 1.2 mobilization protein mobC compare
DDA3937_RS06670 +1.0 2.2 VirK family protein compare
DDA3937_RS09380 +1.0 4.3 outer membrane permeability protein SanA compare
DDA3937_RS20830 +1.0 4.1 ABC transporter ATP-binding protein compare
DDA3937_RS15555 +1.0 2.8 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
DDA3937_RS16910 +1.0 3.0 DUF3561 family protein compare
DDA3937_RS13375 +1.0 1.9 flagellar assembly protein FliH compare
DDA3937_RS14080 +1.0 4.3 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS10310 +1.0 3.0 exodeoxyribonuclease III compare
DDA3937_RS09500 +1.0 5.2 arginine ABC transporter permease ArtM compare
DDA3937_RS14145 +1.0 4.7 formate dehydrogenase accessory protein FdhE compare
DDA3937_RS08015 +1.0 2.7 LysR family transcriptional regulator compare
DDA3937_RS10115 +1.0 1.9 hypothetical protein compare
DDA3937_RS01945 +1.0 3.5 ribonuclease E inhibitor RraB compare
DDA3937_RS09670 +1.0 4.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS16250 +1.0 2.7 nicotinamide-nucleotide amidase compare
DDA3937_RS08565 +1.0 1.6 GTP 3',8-cyclase MoaA compare
DDA3937_RS20645 +1.0 5.2 YicC family protein compare
DDA3937_RS11480 +1.0 1.8 NUDIX hydrolase compare
DDA3937_RS08075 +1.0 2.6 threo-3-hydroxy-L-aspartate ammonia-lyase compare
DDA3937_RS06700 +1.0 3.8 outer membrane assembly protein AsmA compare
DDA3937_RS18575 +1.0 4.6 class 1 fructose-bisphosphatase compare
DDA3937_RS12595 +1.0 3.4 transcriptional regulator SlyA compare
DDA3937_RS07060 +1.0 4.6 type VI secretion system ATPase TssH compare
DDA3937_RS23215 +1.0 3.6 hypothetical protein compare
DDA3937_RS21795 +1.0 1.6 CopG family transcriptional regulator compare
DDA3937_RS10510 +1.0 2.8 YciK family oxidoreductase compare
DDA3937_RS17180 +1.0 4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS01685 +1.0 3.3 monofunctional biosynthetic peptidoglycan transglycosylase compare
DDA3937_RS03160 +1.0 2.0 VOC family protein compare
DDA3937_RS04230 +1.0 1.8 DUF2597 family protein compare
DDA3937_RS16940 +1.0 5.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS11710 +0.9 2.0 type III secretion system export apparatus subunit SctU compare
DDA3937_RS01695 +0.9 1.9 divisome-associated lipoprotein YraP compare
DDA3937_RS07435 +0.9 3.1 NADH-quinone oxidoreductase subunit B family protein compare
DDA3937_RS02240 +0.9 2.7 ATP-binding cassette domain-containing protein compare
DDA3937_RS09560 +0.9 5.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
DDA3937_RS20955 +0.9 4.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
DDA3937_RS17395 +0.9 1.8 FCD domain-containing protein compare
DDA3937_RS04250 +0.9 2.3 putative phage tail assembly chaperone compare
DDA3937_RS08490 +0.9 2.5 CidB/LrgB family autolysis modulator compare
DDA3937_RS13785 +0.9 1.7 helix-turn-helix transcriptional regulator compare
DDA3937_RS22310 +0.9 1.5 DUF2946 domain-containing protein compare
DDA3937_RS15570 +0.9 2.6 iron ABC transporter permease compare
DDA3937_RS13360 +0.9 1.2 flagellar hook-basal body complex protein FliE compare
DDA3937_RS08775 +0.9 2.4 DNA-binding protein YbiB compare
DDA3937_RS06100 +0.9 0.8 M15 family metallopeptidase compare
DDA3937_RS16015 +0.9 4.1 adenosylmethionine decarboxylase compare
DDA3937_RS07725 +0.9 3.4 type III PLP-dependent enzyme compare
DDA3937_RS23385 +0.9 2.8 DUF1127 domain-containing protein compare
DDA3937_RS06300 +0.9 2.9 ROK family protein compare
DDA3937_RS00100 +0.9 3.4 thiol:disulfide interchange protein DsbA compare
DDA3937_RS19340 +0.9 2.2 transcriptional regulator compare
DDA3937_RS01225 +0.9 0.8 16S ribosomal RNA compare
DDA3937_RS18675 +0.9 1.9 ABC transporter ATP-binding protein compare
DDA3937_RS22405 +0.9 1.2 IS110 family transposase compare
DDA3937_RS05360 +0.9 3.0 LysR family transcriptional regulator compare
DDA3937_RS21120 +0.9 1.0 putative FMN-dependent luciferase-like monooxygenase compare
DDA3937_RS12245 +0.9 0.7 serine protease compare
DDA3937_RS16550 +0.9 2.0 YfiR family protein compare


Specific Phenotypes

For 12 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms