Experiment setATCH145 for Dickeya dadantii 3937
PDB
Group: controlMedia: Potato Dextrose Broth + kanamycin (50 ug/ml)
Culturing: Dda3937, 24 well plate
By: Tyler Helmann on 11/16/20
Specific Phenotypes
For 12 genes in this experiment
For control kanamycin in Dickeya dadantii 3937
For control kanamycin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Biogenesis of c-type cytochromes | 1 |
| Formate dehydrogenase | 1 |
| Formate hydrogenase | 1 |
| Periplasmic disulfide interchange | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| formate oxidation to CO2 | 1 | 1 | 1 |
| nitrate reduction III (dissimilatory) | 2 | 2 | 1 |
| periplasmic disulfide bond reduction | 2 | 2 | 1 |
| formate to dimethyl sulfoxide electron transfer | 2 | 1 | 1 |
| formate to trimethylamine N-oxide electron transfer | 2 | 1 | 1 |
| formate to nitrite electron transfer | 3 | 2 | 1 |
| oxalate degradation VI | 4 | 2 | 1 |
| oxalate degradation III | 5 | 2 | 1 |
| cytochrome c biogenesis (system I type) | 11 | 4 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 4 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 13 | 1 |