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  • Experiment setATCH145 for Dickeya dadantii 3937

    Compare to:

    PDB

    Group: control
    Media: Potato Dextrose Broth + kanamycin (50 ug/ml)
    Culturing: Dda3937, 24 well plate
    By: Tyler Helmann on 11/16/20

    Specific Phenotypes

    For 12 genes in this experiment

    For control kanamycin in Dickeya dadantii 3937

    For control kanamycin across organisms

    SEED Subsystems

    Subsystem #Specific
    Biogenesis of c-type cytochromes 1
    Formate dehydrogenase 1
    Formate hydrogenase 1
    Periplasmic disulfide interchange 1

    Metabolic Maps

    Color code by fitness: see overview map or list of maps.

    Maps containing gene(s) with specific phenotypes:

    • Glyoxylate and dicarboxylate metabolism
    • Methane metabolism

    MetaCyc Pathways

    Pathways that contain genes with specific phenotypes:

    Pathway #Steps #Present #Specific
    formate oxidation to CO2 1 1 1
    nitrate reduction III (dissimilatory) 2 2 1
    periplasmic disulfide bond reduction 2 2 1
    formate to dimethyl sulfoxide electron transfer 2 1 1
    formate to trimethylamine N-oxide electron transfer 2 1 1
    formate to nitrite electron transfer 3 2 1
    oxalate degradation VI 4 2 1
    oxalate degradation III 5 2 1
    cytochrome c biogenesis (system I type) 11 4 1
    superpathway of C1 compounds oxidation to CO2 12 4 1
    purine nucleobases degradation I (anaerobic) 15 6 1
    purine nucleobases degradation II (anaerobic) 24 13 1