Experiment setATCH133 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.8 -9.2 thymidylate synthase compare
DZA65_RS00800 -3.2 -6.5 O-antigen ligase family protein compare
DZA65_RS00735 -3.1 -7.9 orotate phosphoribosyltransferase compare
DZA65_RS10055 -2.9 -6.7 histidinol dehydrogenase compare
DZA65_RS10045 -2.9 -6.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS21530 -2.8 -14.7 glycerol kinase GlpK compare
DZA65_RS19540 -2.8 -6.9 phosphoglycerate dehydrogenase compare
DZA65_RS19655 -2.7 -4.1 adenylosuccinate synthase compare
DZA65_RS01635 -2.7 -19.8 glutamate synthase large subunit compare
DZA65_RS17390 -2.7 -13.9 inner membrane protein YpjD compare
DZA65_RS22210 -2.7 -11.4 nitrogen regulation protein NR(I) compare
DZA65_RS10030 -2.7 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS20275 -2.6 -12.6 homoserine O-succinyltransferase compare
DZA65_RS10810 -2.6 -10.3 formyltetrahydrofolate deformylase compare
DZA65_RS00935 -2.6 -11.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS13125 -2.6 -4.5 Grx4 family monothiol glutaredoxin compare
DZA65_RS19480 -2.6 -4.8 homoserine kinase compare
DZA65_RS01260 -2.5 -12.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS21310 -2.5 -13.3 ketol-acid reductoisomerase compare
DZA65_RS10050 -2.5 -6.1 histidinol-phosphate transaminase compare
DZA65_RS06685 -2.5 -14.0 asparagine synthase B compare
DZA65_RS02680 -2.5 -10.7 heavy metal translocating P-type ATPase compare
DZA65_RS20355 -2.5 -5.9 Trk system potassium transporter TrkA compare
DZA65_RS06420 -2.5 -12.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS13390 -2.5 -8.9 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS00945 -2.4 -12.0 argininosuccinate lyase compare
DZA65_RS19200 -2.4 -15.8 2-isopropylmalate synthase compare
DZA65_RS06470 -2.4 -7.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS14310 -2.4 -3.1 LysR family transcriptional regulator compare
DZA65_RS17165 -2.4 -10.4 aspartate 1-decarboxylase compare
DZA65_RS13030 -2.3 -10.3 orotidine-5'-phosphate decarboxylase compare
DZA65_RS17160 -2.3 -6.7 pantoate--beta-alanine ligase compare
DZA65_RS01630 -2.3 -12.2 FAD-dependent oxidoreductase compare
DZA65_RS19380 -2.3 -13.7 carbamoyl-phosphate synthase large subunit compare
DZA65_RS01970 -2.3 -13.1 aspartate carbamoyltransferase compare
DZA65_RS13710 -2.3 -12.1 dihydroorotase compare
DZA65_RS00895 -2.3 -13.5 phosphoenolpyruvate carboxylase compare
DZA65_RS16715 -2.3 -1.8 Fe-S cluster assembly scaffold IscU compare
DZA65_RS01985 -2.3 -10.0 ornithine carbamoyltransferase compare
DZA65_RS19645 -2.3 -14.1 class 1 fructose-bisphosphatase compare
DZA65_RS21470 -2.2 -13.1 cystathionine gamma-synthase compare
DZA65_RS17155 -2.2 -8.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS21475 -2.2 -3.2 met regulon transcriptional regulator MetJ compare
DZA65_RS18550 -2.2 -8.8 diaminopimelate decarboxylase compare
DZA65_RS00355 -2.1 -12.1 argininosuccinate synthase compare
DZA65_RS15480 -2.0 -7.3 phosphohistidine phosphatase SixA compare
DZA65_RS01510 -2.0 -6.4 RNA polymerase factor sigma-54 compare
DZA65_RS16830 -2.0 -15.6 phosphoribosylformylglycinamidine synthase compare
DZA65_RS01255 -2.0 -10.2 phosphoribosylamine--glycine ligase compare
DZA65_RS12975 -2.0 -7.1 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS00940 -2.0 -6.7 acetylglutamate kinase compare
DZA65_RS19210 -2.0 -9.8 3-isopropylmalate dehydratase large subunit compare
DZA65_RS10950 -2.0 -5.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS10025 -2.0 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS15995 -1.9 -7.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS19385 -1.9 -9.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS10940 -1.9 -6.6 tryptophan synthase subunit alpha compare
DZA65_RS01785 -1.9 -10.9 cystathionine beta-lyase compare
DZA65_RS15335 -1.9 -13.3 amidophosphoribosyltransferase compare
DZA65_RS22625 -1.9 -8.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS19350 -1.9 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS18320 -1.9 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS21335 -1.9 -10.7 dihydroxy-acid dehydratase compare
DZA65_RS19215 -1.9 -3.4 3-isopropylmalate dehydratase small subunit compare
DZA65_RS16090 -1.8 -2.4 sulfurtransferase TusE compare
DZA65_RS18975 -1.8 -1.9 helix-turn-helix transcriptional regulator compare
DZA65_RS09035 -1.8 -3.3 ABC transporter ATP-binding protein compare
DZA65_RS05340 -1.8 -10.3 amino-acid N-acetyltransferase compare
DZA65_RS19205 -1.8 -9.1 3-isopropylmalate dehydrogenase compare
DZA65_RS21525 -1.8 -11.7 aquaporin family protein compare
DZA65_RS11865 -1.8 -4.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS09915 -1.8 -6.8 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS15585 -1.8 -13.3 TonB-dependent siderophore receptor compare
DZA65_RS10945 -1.7 -5.7 tryptophan synthase subunit beta compare
DZA65_RS02490 -1.7 -7.4 phosphoserine phosphatase compare
DZA65_RS19495 -1.7 -1.9 two-component system response regulator ArcA compare
DZA65_RS15555 -1.7 -6.7 iron-enterobactin ABC transporter permease compare
DZA65_RS01615 -1.7 -8.9 stringent starvation protein A compare
DZA65_RS21745 -1.7 -4.5 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS09455 -1.7 -5.7 DUF3413 domain-containing protein compare
DZA65_RS15370 -1.6 -4.9 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS20555 -1.6 -2.7 sulfurtransferase complex subunit TusD compare
DZA65_RS00870 -1.6 -8.2 HTH-type transcriptional regulator MetR compare
DZA65_RS10965 -1.6 -7.0 anthranilate synthase component 1 compare
DZA65_RS18060 -1.6 -4.7 adenylyl-sulfate kinase compare
DZA65_RS15545 -1.6 -7.1 enterobactin transporter EntS compare
DZA65_RS00930 -1.6 -9.7 acetylornithine deacetylase compare
DZA65_RS19485 -1.5 -9.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS10060 -1.5 -5.1 ATP phosphoribosyltransferase compare
DZA65_RS21275 -1.5 -8.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS13310 -1.5 -4.8 Fe-S cluster assembly scaffold SufA compare
DZA65_RS13285 -1.5 -6.3 cysteine desulfuration protein SufE compare
DZA65_RS19475 -1.4 -4.3 threonine synthase compare
DZA65_RS15990 -1.4 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS01500 -1.4 -4.7 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS10905 -1.4 -5.3 TonB system transport protein TonB compare
DZA65_RS15540 -1.4 -7.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS20550 -1.4 -3.0 sulfurtransferase complex subunit TusC compare
DZA65_RS16930 -1.4 -8.9 RNA polymerase sigma factor RpoE compare
DZA65_RS01790 -1.4 -8.5 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS21330 -1.3 -9.7 threonine ammonia-lyase, biosynthetic compare
DZA65_RS21090 -1.3 -1.7 tyrosine recombinase XerC compare
DZA65_RS15550 -1.3 -5.4 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS17345 -1.3 -7.2 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS20655 -1.3 -8.6 aspartate aminotransferase family protein compare
DZA65_RS11915 -1.3 -2.0 ferrous iron transport protein A compare
DZA65_RS00530 -1.3 -1.3 DUF1471 domain-containing protein compare
DZA65_RS17690 -1.2 -8.4 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS09910 -1.2 -3.6 thioredoxin-disulfide reductase compare
DZA65_RS15580 -1.2 -5.0 enterochelin esterase compare
DZA65_RS19265 -1.2 -3.8 ilvB operon leader peptide IvbL compare
DZA65_RS19195 -1.2 -2.6 leu operon leader peptide compare
DZA65_RS01580 -1.2 -9.3 outer membrane-stress sensor serine endopeptidase DegS compare
DZA65_RS13305 -1.2 -8.5 Fe-S cluster assembly protein SufB compare
DZA65_RS13085 -1.2 -2.9 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS19175 -1.2 -7.2 catabolite repressor/activator compare
DZA65_RS09990 -1.2 -2.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS03185 -1.2 -2.1 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS15380 -1.2 -5.9 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS13450 -1.2 -8.4 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS01050 -1.2 -7.3 Trk system potassium transporter TrkH compare
DZA65_RS11020 -1.2 -6.6 HTH-type transcriptional regulator CysB compare
DZA65_RS17695 -1.2 -3.4 glutamate 5-kinase compare
DZA65_RS21420 -1.1 -8.5 glutamate racemase compare
DZA65_RS06900 -1.1 -1.9 colicin uptake protein TolR compare
DZA65_RS18085 -1.1 -7.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS04370 -1.1 -4.1 cysteine synthase A compare
DZA65_RS21790 -1.1 -1.7 sulfurtransferase TusA compare
DZA65_RS09375 -1.1 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS05940 -1.1 -7.3 2-dehydropantoate 2-reductase compare
DZA65_RS18080 -1.1 -2.2 phosphoadenylyl-sulfate reductase compare
DZA65_RS03255 -1.1 -1.9 polyribonucleotide nucleotidyltransferase compare
DZA65_RS22145 -1.1 -2.1 DNA-directed RNA polymerase subunit omega compare
DZA65_RS16885 -1.1 -3.9 pyridoxine 5'-phosphate synthase compare
DZA65_RS14415 -1.1 -2.1 IS4 family transposase compare
DZA65_RS03705 -1.1 -3.7 hypothetical protein compare
DZA65_RS05930 -1.1 -4.9 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS13025 -1.1 -1.7 stress response translation initiation inhibitor YciH compare
DZA65_RS05885 -1.0 -3.8 transcriptional regulator NrdR compare
DZA65_RS02475 -1.0 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
DZA65_RS05965 -1.0 -3.1 protoheme IX farnesyltransferase compare
DZA65_RS14990 -1.0 -5.8 transcriptional regulator LrhA compare
DZA65_RS09030 -1.0 -7.0 iron ABC transporter permease compare
DZA65_RS19270 -1.0 -6.5 acetolactate synthase large subunit compare
DZA65_RS09520 -1.0 -2.9 microcin C ABC transporter ATP-binding protein YejF compare
DZA65_RS06145 -1.0 -1.2 DUF454 family protein compare
DZA65_RS10960 -1.0 -2.1 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS13465 -1.0 -7.1 L,D-transpeptidase compare
DZA65_RS20805 -1.0 -1.1 intracellular growth attenuator family protein compare
DZA65_RS09010 -1.0 -2.5 cyclic pyranopterin monophosphate synthase MoaC compare
DZA65_RS09015 -1.0 -1.4 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS20545 -0.9 -1.8 sulfurtransferase complex subunit TusB compare
DZA65_RS11145 -0.9 -4.6 ROK family transcriptional regulator compare
DZA65_RS01020 -0.9 -1.0 YeeE/YedE family protein compare
DZA65_RS06220 -0.9 -6.6 hypothetical protein conserved
DZA65_RS07635 -0.9 -2.3 TrbC/VirB2 family protein compare
DZA65_RS18065 -0.9 -5.1 sulfate adenylyltransferase subunit CysN compare
DZA65_RS21800 -0.9 -1.7 DcrB family lipoprotein compare
DZA65_RS05490 -0.9 -6.2 sigma E protease regulator RseP compare
DZA65_RS01795 -0.9 -2.9 TonB system transport protein ExbD compare
DZA65_RS12230 -0.9 -2.0 HrpP protein compare
DZA65_RS13290 -0.9 -6.1 cysteine desulfurase SufS compare
DZA65_RS18070 -0.9 -5.4 sulfate adenylyltransferase subunit CysD compare
DZA65_RS10825 -0.9 -4.2 two-component system response regulator RssB compare
DZA65_RS13300 -0.9 -5.3 Fe-S cluster assembly ATPase SufC compare
DZA65_RS21265 -0.9 -2.2 thioredoxin TrxA compare
DZA65_RS21270 -0.9 -6.5 ATP-dependent RNA helicase RhlB compare
DZA65_RS20520 -0.8 -2.3 bacterioferritin-associated ferredoxin compare
DZA65_RS02060 -0.8 -2.8 leucyl aminopeptidase compare
DZA65_RS19665 -0.8 -2.6 protease modulator HflC compare
DZA65_RS09025 -0.8 -5.3 iron ABC transporter substrate-binding protein compare
DZA65_RS16710 -0.8 -1.4 iron-sulfur cluster assembly protein IscA compare
DZA65_RS01005 -0.8 -1.8 NAD(P)H-flavin reductase compare
DZA65_RS18090 -0.8 -5.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DZA65_RS16935 -0.8 -6.2 L-aspartate oxidase compare
DZA65_RS19035 -0.8 -4.3 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS10955 -0.8 -1.8 anthranilate phosphoribosyltransferase compare
DZA65_RS12770 -0.8 -1.8 acid resistance repetitive basic protein Asr compare
DZA65_RS17860 -0.8 -1.4 GntR family transcriptional regulator compare
DZA65_RS20005 -0.8 -1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS05980 -0.8 -4.0 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS10485 -0.8 -2.5 membrane protein compare
DZA65_RS21540 -0.8 -2.6 ferredoxin--NADP(+) reductase compare
DZA65_RS07560 -0.8 -1.8 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS22735 -0.8 -1.5 hypothetical protein compare
DZA65_RS05860 -0.8 -2.0 preprotein translocase subunit YajC compare
DZA65_RS22770 -0.8 -2.3 hypothetical protein compare
DZA65_RS20875 -0.8 -1.8 Fe-S biogenesis protein NfuA compare
DZA65_RS13295 -0.8 -4.1 Fe-S cluster assembly protein SufD compare
DZA65_RS16655 -0.8 -3.6 cytoskeleton protein RodZ compare
DZA65_RS15565 -0.8 -1.6 hypothetical protein compare
DZA65_RS01190 -0.8 -5.7 2-iminoacetate synthase ThiH compare
DZA65_RS16235 -0.8 -4.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DZA65_RS14440 -0.7 -2.6 kikA from plasmid origin compare
DZA65_RS20255 -0.7 -4.0 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS21460 -0.7 -4.8 methylenetetrahydrofolate reductase compare
DZA65_RS03415 -0.7 -3.4 DUF1435 domain-containing protein compare
DZA65_RS13195 -0.7 -2.6 hypothetical protein compare
DZA65_RS09270 -0.7 -2.1 hypothetical protein compare
DZA65_RS18075 -0.7 -3.8 uroporphyrinogen-III C-methyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms