Experiment setATCH132 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS22145 -3.8 -2.6 DNA-directed RNA polymerase subunit omega compare
DZA65_RS05310 -3.6 -10.4 thymidylate synthase compare
DZA65_RS10030 -3.4 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS10050 -3.2 -6.0 histidinol-phosphate transaminase compare
DZA65_RS17390 -3.0 -15.2 inner membrane protein YpjD compare
DZA65_RS00800 -3.0 -6.5 O-antigen ligase family protein compare
DZA65_RS21530 -2.9 -15.1 glycerol kinase GlpK compare
DZA65_RS19350 -2.9 -5.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS17160 -2.8 -9.2 pantoate--beta-alanine ligase compare
DZA65_RS01635 -2.8 -20.2 glutamate synthase large subunit compare
DZA65_RS01630 -2.7 -13.1 FAD-dependent oxidoreductase compare
DZA65_RS19540 -2.6 -7.7 phosphoglycerate dehydrogenase compare
DZA65_RS19380 -2.5 -14.7 carbamoyl-phosphate synthase large subunit compare
DZA65_RS10940 -2.5 -7.0 tryptophan synthase subunit alpha compare
DZA65_RS00935 -2.5 -11.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS20275 -2.5 -11.7 homoserine O-succinyltransferase compare
DZA65_RS19215 -2.5 -5.7 3-isopropylmalate dehydratase small subunit compare
DZA65_RS01260 -2.5 -12.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS17165 -2.4 -10.7 aspartate 1-decarboxylase compare
DZA65_RS19645 -2.4 -14.3 class 1 fructose-bisphosphatase compare
DZA65_RS02680 -2.3 -12.2 heavy metal translocating P-type ATPase compare
DZA65_RS10810 -2.3 -10.1 formyltetrahydrofolate deformylase compare
DZA65_RS01970 -2.3 -13.0 aspartate carbamoyltransferase compare
DZA65_RS01985 -2.3 -11.0 ornithine carbamoyltransferase compare
DZA65_RS19210 -2.3 -11.7 3-isopropylmalate dehydratase large subunit compare
DZA65_RS06420 -2.3 -11.7 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS15995 -2.3 -8.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS00355 -2.3 -12.3 argininosuccinate synthase compare
DZA65_RS01255 -2.3 -11.5 phosphoribosylamine--glycine ligase compare
DZA65_RS15370 -2.3 -5.8 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS00895 -2.2 -13.9 phosphoenolpyruvate carboxylase compare
DZA65_RS19200 -2.2 -14.5 2-isopropylmalate synthase compare
DZA65_RS00735 -2.2 -5.6 orotate phosphoribosyltransferase compare
DZA65_RS06685 -2.2 -13.9 asparagine synthase B compare
DZA65_RS22210 -2.2 -9.7 nitrogen regulation protein NR(I) compare
DZA65_RS19480 -2.1 -4.7 homoserine kinase compare
DZA65_RS09990 -2.1 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS21470 -2.1 -12.4 cystathionine gamma-synthase compare
DZA65_RS15480 -2.1 -8.6 phosphohistidine phosphatase SixA compare
DZA65_RS00945 -2.1 -10.8 argininosuccinate lyase compare
DZA65_RS13390 -2.0 -8.4 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS16830 -2.0 -15.2 phosphoribosylformylglycinamidine synthase compare
DZA65_RS21310 -2.0 -11.3 ketol-acid reductoisomerase compare
DZA65_RS15990 -2.0 -4.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS00940 -1.9 -7.3 acetylglutamate kinase compare
DZA65_RS19385 -1.9 -8.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS19205 -1.9 -11.5 3-isopropylmalate dehydrogenase compare
DZA65_RS10945 -1.9 -6.3 tryptophan synthase subunit beta compare
DZA65_RS06470 -1.9 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS01510 -1.9 -6.8 RNA polymerase factor sigma-54 compare
DZA65_RS19655 -1.9 -3.5 adenylosuccinate synthase compare
DZA65_RS12975 -1.9 -5.9 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS21335 -1.9 -10.6 dihydroxy-acid dehydratase compare
DZA65_RS17155 -1.9 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS15335 -1.9 -12.7 amidophosphoribosyltransferase compare
DZA65_RS10055 -1.9 -3.5 histidinol dehydrogenase compare
DZA65_RS00870 -1.8 -8.5 HTH-type transcriptional regulator MetR compare
DZA65_RS13030 -1.8 -8.2 orotidine-5'-phosphate decarboxylase compare
DZA65_RS09915 -1.8 -6.2 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS18550 -1.8 -8.0 diaminopimelate decarboxylase compare
DZA65_RS02490 -1.8 -8.2 phosphoserine phosphatase compare
DZA65_RS10955 -1.8 -2.6 anthranilate phosphoribosyltransferase compare
DZA65_RS09455 -1.8 -4.8 DUF3413 domain-containing protein compare
DZA65_RS22625 -1.8 -8.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS18060 -1.8 -6.1 adenylyl-sulfate kinase compare
DZA65_RS05340 -1.7 -10.4 amino-acid N-acetyltransferase compare
DZA65_RS15585 -1.7 -13.3 TonB-dependent siderophore receptor compare
DZA65_RS13710 -1.7 -9.3 dihydroorotase compare
DZA65_RS17195 -1.7 -4.5 hypothetical protein compare
DZA65_RS13025 -1.7 -2.2 stress response translation initiation inhibitor YciH compare
DZA65_RS06820 -1.6 -3.1 citrate synthase compare
DZA65_RS21525 -1.6 -10.6 aquaporin family protein compare
DZA65_RS21790 -1.6 -2.5 sulfurtransferase TusA compare
DZA65_RS10960 -1.6 -2.9 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS05975 -1.6 -2.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS10905 -1.6 -5.3 TonB system transport protein TonB compare
DZA65_RS01785 -1.6 -9.3 cystathionine beta-lyase compare
DZA65_RS01615 -1.6 -7.8 stringent starvation protein A compare
DZA65_RS18320 -1.6 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS15545 -1.6 -8.4 enterobactin transporter EntS compare
DZA65_RS14415 -1.5 -1.9 IS4 family transposase compare
DZA65_RS20355 -1.5 -3.5 Trk system potassium transporter TrkA compare
DZA65_RS19485 -1.5 -10.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS17860 -1.5 -2.0 GntR family transcriptional regulator compare
DZA65_RS20940 -1.5 -3.4 cold-shock protein compare
DZA65_RS10025 -1.5 -4.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS13085 -1.5 -3.8 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS15550 -1.5 -7.0 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS13125 -1.5 -3.8 Grx4 family monothiol glutaredoxin compare
DZA65_RS13310 -1.5 -5.8 Fe-S cluster assembly scaffold SufA compare
DZA65_RS15380 -1.4 -6.8 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS11020 -1.4 -7.2 HTH-type transcriptional regulator CysB compare
DZA65_RS15580 -1.4 -6.1 enterochelin esterase compare
DZA65_RS21275 -1.4 -8.2 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS20555 -1.4 -1.9 sulfurtransferase complex subunit TusD compare
DZA65_RS13450 -1.4 -10.3 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS01790 -1.4 -8.5 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS01050 -1.4 -8.6 Trk system potassium transporter TrkH compare
DZA65_RS10965 -1.4 -6.7 anthranilate synthase component 1 compare
DZA65_RS20550 -1.4 -2.6 sulfurtransferase complex subunit TusC compare
DZA65_RS10045 -1.4 -3.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS17345 -1.4 -7.2 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS14345 -1.3 -2.7 AlpA family transcriptional regulator compare
DZA65_RS05965 -1.3 -3.8 protoheme IX farnesyltransferase compare
DZA65_RS00930 -1.3 -7.6 acetylornithine deacetylase compare
DZA65_RS21420 -1.3 -9.9 glutamate racemase compare
DZA65_RS15555 -1.3 -5.5 iron-enterobactin ABC transporter permease compare
DZA65_RS01005 -1.2 -3.5 NAD(P)H-flavin reductase compare
DZA65_RS15540 -1.2 -6.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS18070 -1.2 -7.7 sulfate adenylyltransferase subunit CysD compare
DZA65_RS13305 -1.2 -8.3 Fe-S cluster assembly protein SufB compare
DZA65_RS21355 -1.2 -2.6 ilv operon leader peptide compare
DZA65_RS09035 -1.2 -2.9 ABC transporter ATP-binding protein compare
DZA65_RS17690 -1.2 -7.7 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS09015 -1.2 -1.6 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS05885 -1.1 -4.1 transcriptional regulator NrdR compare
DZA65_RS18600 -1.1 -2.0 DUF1330 domain-containing protein compare
DZA65_RS14295 -1.1 -2.9 DUF2594 family protein compare
DZA65_RS20655 -1.1 -7.7 aspartate aminotransferase family protein compare
DZA65_RS11865 -1.1 -2.8 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS19270 -1.1 -6.9 acetolactate synthase large subunit compare
DZA65_RS19475 -1.1 -4.2 threonine synthase compare
DZA65_RS13300 -1.1 -6.5 Fe-S cluster assembly ATPase SufC compare
DZA65_RS19195 -1.0 -2.8 leu operon leader peptide compare
DZA65_RS18920 -1.0 -3.6 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS03230 -1.0 -1.6 transcription termination/antitermination protein NusA compare
DZA65_RS21745 -1.0 -3.0 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS16655 -1.0 -3.9 cytoskeleton protein RodZ compare
DZA65_RS14990 -1.0 -6.2 transcriptional regulator LrhA compare
DZA65_RS10950 -1.0 -4.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS13285 -1.0 -5.0 cysteine desulfuration protein SufE compare
DZA65_RS13465 -1.0 -7.1 L,D-transpeptidase compare
DZA65_RS09010 -1.0 -3.1 cyclic pyranopterin monophosphate synthase MoaC compare
DZA65_RS19515 -1.0 -5.3 non-canonical purine NTP phosphatase compare
DZA65_RS06220 -1.0 -6.7 hypothetical protein conserved
DZA65_RS21270 -1.0 -7.0 ATP-dependent RNA helicase RhlB compare
DZA65_RS09030 -1.0 -6.4 iron ABC transporter permease compare
DZA65_RS21330 -1.0 -7.5 threonine ammonia-lyase, biosynthetic compare
DZA65_RS13295 -1.0 -4.7 Fe-S cluster assembly protein SufD compare
DZA65_RS01205 -1.0 -2.4 HesA/MoeB/ThiF family protein compare
DZA65_RS13290 -1.0 -6.1 cysteine desulfurase SufS compare
DZA65_RS16090 -0.9 -1.5 sulfurtransferase TusE compare
DZA65_RS18410 -0.9 -5.1 nitric oxide-sensing transcriptional repressor NsrR compare
DZA65_RS16930 -0.9 -6.3 RNA polymerase sigma factor RpoE compare
DZA65_RS05940 -0.9 -6.2 2-dehydropantoate 2-reductase compare
DZA65_RS04355 -0.9 -5.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS19175 -0.9 -5.5 catabolite repressor/activator compare
DZA65_RS17695 -0.9 -2.0 glutamate 5-kinase compare
DZA65_RS01500 -0.9 -3.4 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS01370 -0.9 -1.1 YhdT family protein compare
DZA65_RS05930 -0.9 -4.0 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS21700 -0.9 -3.2 LysR family transcriptional regulator compare
DZA65_RS18090 -0.9 -6.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DZA65_RS18455 -0.9 -3.2 XTP/dITP diphosphatase compare
DZA65_RS02010 -0.9 -2.8 GNAT family N-acetyltransferase compare
DZA65_RS00675 -0.9 -1.8 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS09025 -0.9 -5.5 iron ABC transporter substrate-binding protein compare
DZA65_RS02475 -0.9 -1.6 5-formyltetrahydrofolate cyclo-ligase compare
DZA65_RS01725 -0.9 -4.9 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS01580 -0.8 -6.7 outer membrane-stress sensor serine endopeptidase DegS compare
DZA65_RS11210 -0.8 -1.1 TetR family transcriptional regulator compare
DZA65_RS05985 -0.8 -2.8 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS11175 -0.8 -2.7 DUF2384 domain-containing protein compare
DZA65_RS21540 -0.8 -2.7 ferredoxin--NADP(+) reductase compare
DZA65_RS21475 -0.8 -1.4 met regulon transcriptional regulator MetJ compare
DZA65_RS20545 -0.8 -1.8 sulfurtransferase complex subunit TusB compare
DZA65_RS18085 -0.8 -5.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS01795 -0.8 -2.7 TonB system transport protein ExbD compare
DZA65_RS14310 -0.8 -1.3 LysR family transcriptional regulator compare
DZA65_RS20875 -0.8 -1.5 Fe-S biogenesis protein NfuA compare
DZA65_RS12605 -0.8 -3.1 phage tail protein I compare
DZA65_RS18785 -0.8 -1.7 hypothetical protein compare
DZA65_RS14855 -0.8 -3.7 hydrogenase expression/formation protein HypE compare
DZA65_RS05860 -0.8 -1.6 preprotein translocase subunit YajC compare
DZA65_RS16885 -0.8 -2.8 pyridoxine 5'-phosphate synthase compare
DZA65_RS16370 -0.8 -1.3 hypothetical protein compare
DZA65_RS19035 -0.8 -4.3 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS14215 -0.8 -3.2 acyl carrier protein compare
DZA65_RS19495 -0.8 -1.2 two-component system response regulator ArcA compare
DZA65_RS03705 -0.8 -3.8 hypothetical protein compare
DZA65_RS20965 -0.7 -1.7 gluconokinase compare
DZA65_RS07460 -0.7 -3.0 SDR family oxidoreductase compare
DZA65_RS13110 -0.7 -1.3 DUF1289 domain-containing protein compare
DZA65_RS08675 -0.7 -2.9 CidB/LrgB family autolysis modulator compare
DZA65_RS10060 -0.7 -3.1 ATP phosphoribosyltransferase compare
DZA65_RS15745 -0.7 -3.9 LacI family DNA-binding transcriptional regulator compare
DZA65_RS06510 -0.7 -1.3 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS06165 -0.7 -1.9 recombination protein RecR compare
DZA65_RS18075 -0.7 -3.7 uroporphyrinogen-III C-methyltransferase compare
DZA65_RS19615 -0.7 -3.7 SprT family zinc-dependent metalloprotease compare
DZA65_RS20825 -0.7 -3.8 Hsp33 family molecular chaperone HslO compare
DZA65_RS11550 -0.7 -2.5 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS15565 -0.7 -0.7 hypothetical protein compare
DZA65_RS01620 -0.7 -3.2 ClpXP protease specificity-enhancing factor compare
DZA65_RS04030 -0.7 -2.2 hypothetical protein compare
DZA65_RS03130 -0.7 -3.3 malate dehydrogenase compare
DZA65_RS20915 -0.7 -5.5 glycogen synthase GlgA compare
DZA65_RS19345 -0.7 -4.1 Co2+/Mg2+ efflux protein ApaG compare
DZA65_RS10555 -0.7 -1.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS08460 -0.7 -3.5 metal ABC transporter permease compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms