Experiment setATCH131 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.6 -11.9 thymidylate synthase compare
DZA65_RS21530 -3.2 -18.0 glycerol kinase GlpK compare
DZA65_RS22210 -3.0 -13.0 nitrogen regulation protein NR(I) compare
DZA65_RS13030 -2.8 -13.8 orotidine-5'-phosphate decarboxylase compare
DZA65_RS00735 -2.7 -8.2 orotate phosphoribosyltransferase compare
DZA65_RS15480 -2.7 -9.6 phosphohistidine phosphatase SixA compare
DZA65_RS01635 -2.7 -19.1 glutamate synthase large subunit compare
DZA65_RS19540 -2.6 -6.9 phosphoglycerate dehydrogenase compare
DZA65_RS15995 -2.6 -10.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS19350 -2.6 -6.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS01630 -2.5 -12.8 FAD-dependent oxidoreductase compare
DZA65_RS10810 -2.5 -10.9 formyltetrahydrofolate deformylase compare
DZA65_RS19215 -2.5 -5.1 3-isopropylmalate dehydratase small subunit compare
DZA65_RS10940 -2.5 -7.8 tryptophan synthase subunit alpha compare
DZA65_RS19645 -2.4 -14.4 class 1 fructose-bisphosphatase compare
DZA65_RS19380 -2.3 -14.1 carbamoyl-phosphate synthase large subunit compare
DZA65_RS01970 -2.3 -12.6 aspartate carbamoyltransferase compare
DZA65_RS10030 -2.3 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS06470 -2.3 -8.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS01260 -2.3 -10.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS21090 -2.2 -2.5 tyrosine recombinase XerC compare
DZA65_RS19385 -2.2 -10.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS17155 -2.2 -8.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS21470 -2.2 -13.9 cystathionine gamma-synthase compare
DZA65_RS00800 -2.2 -5.1 O-antigen ligase family protein compare
DZA65_RS00895 -2.2 -12.3 phosphoenolpyruvate carboxylase compare
DZA65_RS00940 -2.2 -7.3 acetylglutamate kinase compare
DZA65_RS00355 -2.2 -13.0 argininosuccinate synthase compare
DZA65_RS02680 -2.2 -10.6 heavy metal translocating P-type ATPase compare
DZA65_RS17165 -2.1 -9.8 aspartate 1-decarboxylase compare
DZA65_RS06685 -2.1 -13.3 asparagine synthase B compare
DZA65_RS00935 -2.1 -9.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS00945 -2.1 -12.2 argininosuccinate lyase compare
DZA65_RS17160 -2.1 -6.4 pantoate--beta-alanine ligase compare
DZA65_RS13125 -2.1 -3.9 Grx4 family monothiol glutaredoxin compare
DZA65_RS10055 -2.1 -4.9 histidinol dehydrogenase compare
DZA65_RS01510 -2.0 -7.7 RNA polymerase factor sigma-54 compare
DZA65_RS06420 -2.0 -10.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS10045 -2.0 -4.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS19200 -2.0 -13.8 2-isopropylmalate synthase compare
DZA65_RS20355 -2.0 -5.7 Trk system potassium transporter TrkA compare
DZA65_RS13390 -1.9 -8.8 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS19210 -1.9 -10.2 3-isopropylmalate dehydratase large subunit compare
DZA65_RS13085 -1.9 -4.5 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS19205 -1.9 -10.7 3-isopropylmalate dehydrogenase compare
DZA65_RS09915 -1.9 -7.3 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS20275 -1.9 -10.8 homoserine O-succinyltransferase compare
DZA65_RS22145 -1.9 -2.6 DNA-directed RNA polymerase subunit omega compare
DZA65_RS17390 -1.9 -12.8 inner membrane protein YpjD compare
DZA65_RS01985 -1.9 -8.6 ornithine carbamoyltransferase compare
DZA65_RS18060 -1.8 -5.4 adenylyl-sulfate kinase compare
DZA65_RS21335 -1.8 -11.0 dihydroxy-acid dehydratase compare
DZA65_RS01255 -1.8 -9.6 phosphoribosylamine--glycine ligase compare
DZA65_RS05965 -1.8 -5.3 protoheme IX farnesyltransferase compare
DZA65_RS20875 -1.8 -3.7 Fe-S biogenesis protein NfuA compare
DZA65_RS15335 -1.8 -12.6 amidophosphoribosyltransferase compare
DZA65_RS18320 -1.8 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS19495 -1.8 -2.6 two-component system response regulator ArcA compare
DZA65_RS21310 -1.8 -10.3 ketol-acid reductoisomerase compare
DZA65_RS16830 -1.7 -13.4 phosphoribosylformylglycinamidine synthase compare
DZA65_RS21525 -1.7 -11.1 aquaporin family protein compare
DZA65_RS01370 -1.7 -2.8 YhdT family protein compare
DZA65_RS15370 -1.7 -5.9 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS12975 -1.7 -6.0 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS07460 -1.7 -5.8 SDR family oxidoreductase compare
DZA65_RS13710 -1.7 -9.7 dihydroorotase compare
DZA65_RS02490 -1.6 -8.0 phosphoserine phosphatase compare
DZA65_RS01615 -1.6 -8.3 stringent starvation protein A compare
DZA65_RS09910 -1.6 -4.8 thioredoxin-disulfide reductase compare
DZA65_RS09375 -1.5 -1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS00870 -1.5 -7.7 HTH-type transcriptional regulator MetR compare
DZA65_RS01005 -1.5 -4.2 NAD(P)H-flavin reductase compare
DZA65_RS02505 -1.5 -3.4 peptide chain release factor 3 compare
DZA65_RS10050 -1.5 -4.7 histidinol-phosphate transaminase compare
DZA65_RS10905 -1.5 -4.6 TonB system transport protein TonB compare
DZA65_RS16715 -1.5 -1.4 Fe-S cluster assembly scaffold IscU compare
DZA65_RS11020 -1.4 -8.8 HTH-type transcriptional regulator CysB compare
DZA65_RS11865 -1.4 -2.9 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS16705 -1.4 -2.5 co-chaperone HscB compare
DZA65_RS13450 -1.4 -10.4 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS10025 -1.4 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS10965 -1.4 -7.4 anthranilate synthase component 1 compare
DZA65_RS09990 -1.4 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS18550 -1.4 -7.0 diaminopimelate decarboxylase compare
DZA65_RS21745 -1.4 -4.7 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS22625 -1.3 -6.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS09035 -1.3 -2.9 ABC transporter ATP-binding protein compare
DZA65_RS06820 -1.3 -2.9 citrate synthase compare
DZA65_RS01050 -1.3 -7.9 Trk system potassium transporter TrkH compare
DZA65_RS05975 -1.3 -2.2 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS15585 -1.3 -10.4 TonB-dependent siderophore receptor compare
DZA65_RS17345 -1.3 -8.0 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS10945 -1.3 -5.6 tryptophan synthase subunit beta compare
DZA65_RS10060 -1.3 -5.1 ATP phosphoribosyltransferase compare
DZA65_RS01785 -1.2 -7.3 cystathionine beta-lyase compare
DZA65_RS15545 -1.2 -6.5 enterobactin transporter EntS compare
DZA65_RS05340 -1.2 -7.4 amino-acid N-acetyltransferase compare
DZA65_RS18080 -1.2 -2.7 phosphoadenylyl-sulfate reductase compare
DZA65_RS09455 -1.2 -4.4 DUF3413 domain-containing protein compare
DZA65_RS10555 -1.2 -2.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS21275 -1.2 -7.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS09025 -1.2 -7.6 iron ABC transporter substrate-binding protein compare
DZA65_RS20550 -1.2 -2.9 sulfurtransferase complex subunit TusC compare
DZA65_RS16885 -1.2 -4.3 pyridoxine 5'-phosphate synthase compare
DZA65_RS13310 -1.2 -3.0 Fe-S cluster assembly scaffold SufA compare
DZA65_RS18065 -1.2 -6.9 sulfate adenylyltransferase subunit CysN compare
DZA65_RS19515 -1.2 -6.6 non-canonical purine NTP phosphatase compare
DZA65_RS19175 -1.2 -6.7 catabolite repressor/activator compare
DZA65_RS10485 -1.2 -3.9 membrane protein compare
DZA65_RS15550 -1.1 -4.5 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS01790 -1.1 -7.4 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS00930 -1.1 -7.1 acetylornithine deacetylase compare
DZA65_RS18070 -1.1 -7.1 sulfate adenylyltransferase subunit CysD compare
DZA65_RS21590 -1.1 -3.5 DNA mismatch repair protein MutT compare
DZA65_RS20655 -1.1 -7.3 aspartate aminotransferase family protein compare
DZA65_RS07635 -1.1 -2.5 TrbC/VirB2 family protein compare
DZA65_RS15555 -1.1 -5.8 iron-enterobactin ABC transporter permease compare
DZA65_RS05860 -1.1 -3.4 preprotein translocase subunit YajC compare
DZA65_RS19270 -1.1 -6.7 acetolactate synthase large subunit compare
DZA65_RS07030 -1.1 -4.8 6-phosphogluconolactonase compare
DZA65_RS01620 -1.1 -5.1 ClpXP protease specificity-enhancing factor compare
DZA65_RS19195 -1.1 -2.7 leu operon leader peptide compare
DZA65_RS17860 -1.1 -1.8 GntR family transcriptional regulator compare
DZA65_RS19655 -1.1 -2.1 adenylosuccinate synthase compare
DZA65_RS17695 -1.1 -3.5 glutamate 5-kinase compare
DZA65_RS18085 -1.1 -6.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS10305 -1.0 -2.0 ATP-binding protein compare
DZA65_RS01500 -1.0 -3.8 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS05885 -1.0 -4.0 transcriptional regulator NrdR compare
DZA65_RS01795 -1.0 -4.1 TonB system transport protein ExbD compare
DZA65_RS19485 -1.0 -6.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS11145 -1.0 -4.8 ROK family transcriptional regulator compare
DZA65_RS16710 -1.0 -2.5 iron-sulfur cluster assembly protein IscA compare
DZA65_RS09520 -1.0 -3.1 microcin C ABC transporter ATP-binding protein YejF compare
DZA65_RS15580 -1.0 -3.9 enterochelin esterase compare
DZA65_RS06660 -1.0 -2.2 tRNA-Met compare
DZA65_RS15380 -0.9 -4.4 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS18090 -0.9 -6.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DZA65_RS15540 -0.9 -5.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS00275 -0.9 -4.9 MltR family transcriptional regulator compare
DZA65_RS10950 -0.9 -3.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS19480 -0.9 -2.8 homoserine kinase compare
DZA65_RS09030 -0.9 -6.3 iron ABC transporter permease compare
DZA65_RS09015 -0.9 -1.3 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS19265 -0.9 -3.8 ilvB operon leader peptide IvbL compare
DZA65_RS02245 -0.9 -1.7 transketolase compare
DZA65_RS15990 -0.9 -2.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS16935 -0.9 -6.5 L-aspartate oxidase compare
DZA65_RS20915 -0.9 -7.0 glycogen synthase GlgA compare
DZA65_RS20555 -0.9 -1.9 sulfurtransferase complex subunit TusD compare
DZA65_RS01725 -0.9 -5.9 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS12245 -0.9 -1.9 type III secretion system export apparatus subunit SctS compare
DZA65_RS03705 -0.9 -4.6 hypothetical protein compare
DZA65_RS16090 -0.9 -1.5 sulfurtransferase TusE compare
DZA65_RS21790 -0.8 -1.7 sulfurtransferase TusA compare
DZA65_RS21330 -0.8 -6.8 threonine ammonia-lyase, biosynthetic compare
DZA65_RS05940 -0.8 -6.1 2-dehydropantoate 2-reductase compare
DZA65_RS10825 -0.8 -4.8 two-component system response regulator RssB compare
DZA65_RS06945 -0.8 -5.8 quinolinate synthase NadA compare
DZA65_RS10955 -0.8 -2.0 anthranilate phosphoribosyltransferase compare
DZA65_RS00675 -0.8 -1.4 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS13305 -0.8 -5.8 Fe-S cluster assembly protein SufB compare
DZA65_RS21270 -0.8 -5.8 ATP-dependent RNA helicase RhlB compare
DZA65_RS05165 -0.8 -1.6 hypothetical protein compare
DZA65_RS19475 -0.8 -2.8 threonine synthase compare
DZA65_RS17595 -0.8 -2.7 hypothetical protein compare
DZA65_RS00740 -0.8 -1.5 nucleoid occlusion factor SlmA compare
DZA65_RS21460 -0.8 -5.0 methylenetetrahydrofolate reductase compare
DZA65_RS12910 -0.8 -4.7 transcriptional regulator TyrR compare
DZA65_RS05930 -0.7 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS04370 -0.7 -2.8 cysteine synthase A compare
DZA65_RS07070 -0.7 -5.1 outer membrane assembly protein AsmA compare
DZA65_RS17690 -0.7 -5.5 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS12020 -0.7 -2.5 ribonuclease toxin immunity protein CdiI compare
DZA65_RS19035 -0.7 -4.2 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS18160 -0.7 -1.2 glycerate kinase compare
DZA65_RS20560 -0.7 -2.9 transcriptional regulator compare
DZA65_RS09525 -0.7 -4.5 ABC transporter permease subunit compare
DZA65_RS12270 -0.7 -2.6 hypothetical protein compare
DZA65_RS05445 -0.7 -4.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS13640 -0.7 -5.0 aminodeoxychorismate lyase compare
DZA65_RS13300 -0.7 -4.1 Fe-S cluster assembly ATPase SufC compare
DZA65_RS21540 -0.7 -2.4 ferredoxin--NADP(+) reductase compare
DZA65_RS06510 -0.7 -0.6 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS18075 -0.7 -4.0 uroporphyrinogen-III C-methyltransferase compare
DZA65_RS04355 -0.7 -4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS10575 -0.7 -3.9 MurR/RpiR family transcriptional regulator compare
DZA65_RS07665 -0.7 -1.8 AlpA family transcriptional regulator compare
DZA65_RS22470 -0.7 -3.4 hydroxymyristoyl-ACP dehydratase compare
DZA65_RS06745 -0.7 -4.2 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS11435 -0.7 -2.2 redox-regulated ATPase YchF compare
DZA65_RS12220 -0.7 -2.9 type III secretion system ATPase SctN compare
DZA65_RS10960 -0.7 -1.2 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS13290 -0.7 -4.6 cysteine desulfurase SufS compare
DZA65_RS07150 -0.7 -2.1 hypothetical protein compare
DZA65_RS04035 -0.7 -1.9 DUF2732 domain-containing protein compare
DZA65_RS21980 -0.6 -3.7 FadR family transcriptional regulator compare
DZA65_RS17400 -0.6 -3.2 glutamate--cysteine ligase compare
DZA65_RS01215 -0.6 -5.3 phosphomethylpyrimidine synthase ThiC compare
DZA65_RS11155 -0.6 -2.1 DUF1283 family protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms