Experiment setATCH131 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most detrimental genes:

  gene name fitness t score description  
DZA65_RS19620 +3.9 30.4 deoxyribonuclease I compare
DZA65_RS05500 +2.3 11.1 molecular chaperone Skp compare
DZA65_RS22240 +2.3 16.9 thiol:disulfide interchange protein DsbA compare
DZA65_RS11120 +2.2 14.2 mannose-6-phosphate isomerase compare
DZA65_RS19730 +2.2 18.6 GDP-mannose 4,6-dehydratase compare
DZA65_RS19720 +2.2 18.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS19725 +2.1 18.5 phosphomannomutase/phosphoglucomutase compare
DZA65_RS19735 +2.1 8.4 ABC transporter permease compare
DZA65_RS11565 +2.1 8.6 disulfide bond formation protein DsbB compare
DZA65_RS19755 +2.0 12.4 glycosyltransferase compare
DZA65_RS10270 +1.9 12.4 ribonuclease T2 compare
DZA65_RS19740 +1.9 9.8 ABC transporter ATP-binding protein compare
DZA65_RS22635 +1.9 6.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS19745 +1.9 11.9 GDP-L-fucose synthase compare
DZA65_RS03625 +1.9 16.2 polysaccharide biosynthesis protein compare
DZA65_RS19750 +1.8 12.0 hypothetical protein compare
DZA65_RS21755 +1.8 10.9 cell division protein FtsX compare
DZA65_RS00835 +1.8 10.9 murein hydrolase activator EnvC compare
DZA65_RS14015 +1.7 13.0 flagellar basal body P-ring formation protein FlgA compare
DZA65_RS13985 +1.7 12.9 flagellar basal-body rod protein FlgG compare
DZA65_RS00995 +1.7 13.1 transcription/translation regulatory transformer protein RfaH compare
DZA65_RS13980 +1.7 14.2 flagellar basal body L-ring protein FlgH compare
DZA65_RS22640 +1.7 8.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS13975 +1.6 11.9 flagellar basal body P-ring protein FlgI compare
DZA65_RS14010 +1.6 8.8 flagellar basal body rod protein FlgB compare
DZA65_RS20840 +1.6 7.9 two-component system response regulator OmpR compare
DZA65_RS13970 +1.6 11.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
DZA65_RS13890 +1.5 7.8 flagellar hook-basal body complex protein FliE compare
DZA65_RS15515 +1.5 10.9 phospholipid-binding lipoprotein MlaA compare
DZA65_RS16165 +1.5 12.4 MdtB/MuxB family multidrug efflux RND transporter permease subunit compare
DZA65_RS13995 +1.5 13.3 flagellar hook protein FlgE compare
DZA65_RS06895 +1.5 7.1 Tol-Pal system protein TolQ compare
DZA65_RS16170 +1.5 12.1 multidrug efflux RND transporter permease subunit MdtC conserved
DZA65_RS14005 +1.5 7.4 flagellar basal body rod protein FlgC compare
DZA65_RS18650 +1.5 4.9 alanine racemase compare
DZA65_RS14000 +1.5 11.6 flagellar hook assembly protein FlgD compare
DZA65_RS14090 +1.4 12.4 flagellar transcriptional regulator FlhC compare
DZA65_RS14040 +1.4 12.5 flagellar type III secretion system protein FlhB compare
DZA65_RS13940 +1.4 11.1 flagellar biosynthetic protein FliO compare
DZA65_RS01550 +1.4 7.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS13905 +1.4 10.1 flagellar assembly protein FliH compare
DZA65_RS14095 +1.4 10.3 flagellar transcriptional regulator FlhD compare
DZA65_RS16160 +1.4 10.1 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit conserved
DZA65_RS13930 +1.4 12.0 flagellar motor switch protein FliM compare
DZA65_RS14035 +1.4 12.2 flagellar biosynthesis protein FlhA compare
DZA65_RS01560 +1.4 9.9 phospholipid-binding protein MlaC compare
DZA65_RS13945 +1.4 12.0 flagellar type III secretion system pore protein FliP compare
DZA65_RS13900 +1.4 10.6 flagellar motor switch protein FliG compare
DZA65_RS13910 +1.4 11.9 flagellum-specific ATP synthase FliI compare
DZA65_RS13895 +1.4 12.4 flagellar basal body M-ring protein FliF compare
DZA65_RS13935 +1.4 7.4 flagellar motor switch protein FliN compare
DZA65_RS21760 +1.4 6.1 cell division ATP-binding protein FtsE compare
DZA65_RS13990 +1.4 9.4 flagellar basal body rod protein FlgF compare
DZA65_RS13955 +1.3 11.6 flagellar type III secretion system protein FliR compare
DZA65_RS13950 +1.3 10.0 flagellar biosynthesis protein FliQ compare
DZA65_RS13920 +1.3 10.4 flagellar hook-length control protein FliK compare
DZA65_RS13925 +1.3 10.2 flagellar basal body-associated protein FliL compare
DZA65_RS16810 +1.3 7.4 nitrogen regulatory protein P-II compare
DZA65_RS01555 +1.3 9.3 outer membrane lipid asymmetry maintenance protein MlaD compare
DZA65_RS02835 +1.3 10.9 protein-disulfide reductase DsbD compare
DZA65_RS22290 +1.2 10.9 substrate-binding domain-containing protein compare
DZA65_RS01525 +1.1 3.4 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS20795 +1.1 8.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DZA65_RS13915 +1.1 8.4 flagella biosynthesis chaperone FliJ compare
DZA65_RS18030 +1.1 7.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
DZA65_RS01545 +1.1 4.8 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS01585 +1.1 7.4 serine endoprotease DegQ compare
DZA65_RS13835 +1.1 7.6 RNA polymerase sigma factor FliA compare
DZA65_RS19695 +1.1 5.3 N-acetylmuramoyl-L-alanine amidase AmiB compare
DZA65_RS03490 +1.1 7.0 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
DZA65_RS20755 +1.0 6.9 SPOR domain-containing protein compare
DZA65_RS14085 +1.0 8.7 flagellar motor stator protein MotA compare
DZA65_RS01315 +1.0 9.3 endonuclease compare
DZA65_RS10550 +1.0 3.5 murein DD-endopeptidase MepM compare
DZA65_RS14785 +1.0 6.6 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS01680 +1.0 6.9 penicillin-binding protein activator compare
DZA65_RS11260 +1.0 6.3 hypothetical protein compare
DZA65_RS00810 +1.0 4.3 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS11265 +1.0 8.5 virulence factor SrfB compare
DZA65_RS03635 +0.9 5.8 sugar transferase compare
DZA65_RS22295 +0.9 7.9 ribokinase compare
DZA65_RS19525 +0.9 8.3 murein transglycosylase compare
DZA65_RS03330 +0.9 6.2 EamA family transporter compare
DZA65_RS21845 +0.9 7.6 insulinase family protein compare
DZA65_RS14780 +0.9 7.7 multidrug efflux RND transporter permease subunit compare
DZA65_RS16370 +0.9 1.6 hypothetical protein compare
DZA65_RS11270 +0.9 7.3 virulence factor compare
DZA65_RS06005 +0.9 4.4 trigger factor compare
DZA65_RS00970 +0.9 3.0 twin-arginine translocase subunit TatA compare
DZA65_RS14080 +0.9 6.2 flagellar motor protein MotB compare
DZA65_RS16870 +0.9 6.6 cyclic-guanylate-specific phosphodiesterase compare
DZA65_RS04545 +0.9 5.5 helix-turn-helix transcriptional regulator compare
DZA65_RS00415 +0.8 5.9 ABC transporter ATP-binding protein compare
DZA65_RS00430 +0.8 6.9 histidine kinase compare
DZA65_RS03470 +0.8 3.5 membrane protein compare
DZA65_RS09705 +0.8 5.0 outer membrane permeability protein SanA compare
DZA65_RS14840 +0.8 2.8 glutamine amidotransferase compare
DZA65_RS15340 +0.8 5.7 colicin V production protein compare
DZA65_RS08380 +0.8 5.3 nucleoside hydrolase compare
DZA65_RS01670 +0.8 3.9 DnaA initiator-associating protein DiaA compare
DZA65_RS00425 +0.8 5.7 sigma-54-dependent Fis family transcriptional regulator compare
DZA65_RS00980 +0.8 5.5 Sec-independent protein translocase subunit TatC compare
DZA65_RS10470 +0.8 4.1 hypothetical protein compare
DZA65_RS00790 +0.8 1.4 glycosyltransferase family 4 protein compare
DZA65_RS21615 +0.8 3.3 envelope stress sensor histidine kinase CpxA compare
DZA65_RS21575 +0.8 2.4 6-phosphofructokinase compare
DZA65_RS01020 +0.7 1.0 YeeE/YedE family protein compare
DZA65_RS04260 +0.7 6.0 GDP-mannose pyrophosphatase NudK compare
DZA65_RS14880 +0.7 3.6 hydrogenase-2 assembly chaperone compare
DZA65_RS06750 +0.7 2.2 EamA family transporter compare
DZA65_RS03465 +0.7 2.6 FAD assembly factor SdhE compare
DZA65_RS18110 +0.7 3.1 7-carboxy-7-deazaguanine synthase QueE compare
DZA65_RS04535 +0.7 5.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DZA65_RS19685 +0.7 1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS19880 +0.7 3.0 MarR family transcriptional regulator compare
DZA65_RS00535 +0.7 2.4 helix-turn-helix transcriptional regulator compare
DZA65_RS13530 +0.7 6.1 transcription-repair coupling factor compare
DZA65_RS06245 +0.7 3.6 2Fe-2S ferredoxin-like protein compare
DZA65_RS13870 +0.7 4.9 flagellin compare
DZA65_RS07065 +0.7 2.7 dCTP deaminase compare
DZA65_RS05705 +0.7 3.1 hypothetical protein compare
DZA65_RS00570 +0.7 1.6 IS3 family transposase compare
DZA65_RS02095 +0.7 1.7 helix-turn-helix transcriptional regulator compare
DZA65_RS11585 +0.7 3.5 septum site-determining protein MinC compare
DZA65_RS03630 +0.7 4.2 NAD-dependent epimerase/dehydratase family protein compare
DZA65_RS00830 +0.7 3.0 divergent polysaccharide deacetylase family protein compare
DZA65_RS15520 +0.7 4.7 tRNA-Arg compare
DZA65_RS22300 +0.7 4.0 ribose ABC transporter substrate-binding protein RbsB compare
DZA65_RS13435 +0.7 5.6 porin compare
DZA65_RS13320 +0.7 1.4 hotdog fold thioesterase compare
DZA65_RS22775 +0.7 0.9 hypothetical protein compare
DZA65_RS22880 +0.6 1.9 YciY family protein compare
DZA65_RS17710 +0.6 2.8 YfiR family protein compare
DZA65_RS16635 +0.6 1.6 outer membrane protein assembly factor BamB compare
DZA65_RS05790 +0.6 2.0 recombination-associated protein RdgC compare
DZA65_RS14045 +0.6 4.0 protein phosphatase CheZ compare
DZA65_RS10220 +0.6 3.0 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
DZA65_RS00410 +0.6 4.7 helix-turn-helix transcriptional regulator compare
DZA65_RS10915 +0.6 3.7 septation protein A compare
DZA65_RS01355 +0.6 4.1 tRNA dihydrouridine synthase DusB compare
DZA65_RS01025 +0.6 1.6 membrane protein compare
DZA65_RS12820 +0.6 3.9 PAS domain-containing protein compare
DZA65_RS01530 +0.6 4.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS05360 +0.6 4.4 murein transglycosylase A compare
DZA65_RS03410 +0.6 1.8 tRNA-Leu compare
DZA65_RS21050 +0.6 0.7 hypothetical protein compare
DZA65_RS09540 +0.6 3.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DZA65_RS01175 +0.6 2.8 DUF1127 domain-containing protein compare
DZA65_RS16105 +0.6 2.4 CoA-binding protein compare
DZA65_RS20220 +0.6 4.0 glucose-6-phosphate isomerase compare
DZA65_RS06100 +0.6 3.1 Hha toxicity modulator TomB compare
DZA65_RS00845 +0.6 1.1 protein-export chaperone SecB compare
DZA65_RS09465 +0.5 3.1 nucleoid-associated protein YejK compare
DZA65_RS04105 +0.5 2.0 phage tail protein compare
DZA65_RS16945 +0.5 4.1 ATP-dependent RNA helicase SrmB compare
DZA65_RS13570 +0.5 2.0 glycine zipper 2TM domain-containing protein compare
DZA65_RS02840 +0.5 3.0 divalent cation tolerance protein CutA compare
DZA65_RS13380 +0.5 2.3 MOSC domain-containing protein compare
DZA65_RS16125 +0.5 2.6 YccF domain-containing protein compare
DZA65_RS05295 +0.5 0.8 RNA pyrophosphohydrolase compare
DZA65_RS22190 +0.5 3.6 glucose-1-phosphatase compare
DZA65_RS02480 +0.5 4.2 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
DZA65_RS08070 +0.5 2.9 diaminobutyrate--2-oxoglutarate transaminase compare
DZA65_RS21610 +0.5 3.3 envelope stress response regulator transcription factor CpxR compare
DZA65_RS04215 +0.5 1.5 SsrA-binding protein SmpB compare
DZA65_RS21465 +0.5 4.4 bifunctional aspartate kinase/homoserine dehydrogenase II compare
DZA65_RS02120 +0.5 2.5 site-specific integrase compare
DZA65_RS17115 +0.5 1.7 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS09885 +0.5 3.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
DZA65_RS12385 +0.5 1.9 ABC transporter permease compare
DZA65_RS09810 +0.5 1.2 DUF2593 family protein compare
DZA65_RS06855 +0.5 2.4 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS19160 +0.5 1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS06920 +0.5 3.7 cell division protein CpoB compare
DZA65_RS14515 +0.5 1.0 transposase compare
DZA65_RS19405 +0.5 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS13130 +0.5 3.6 C40 family peptidase compare
DZA65_RS18020 +0.5 3.5 RNA polymerase sigma factor RpoS compare
DZA65_RS11320 +0.5 3.5 ROK family transcriptional regulator compare
DZA65_RS20835 +0.5 3.0 two-component system sensor histidine kinase EnvZ compare
DZA65_RS11210 +0.5 0.8 TetR family transcriptional regulator compare
DZA65_RS09180 +0.5 1.5 DsbA family protein compare
DZA65_RS07985 +0.5 2.3 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
DZA65_RS22550 +0.5 2.2 phosphate ABC transporter permease PstA compare
DZA65_RS06835 +0.5 3.3 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS01760 +0.5 3.5 cell division protein FtsP compare
DZA65_RS07270 +0.5 3.2 D-galactonate utilization transcriptional regulator DgoR compare
DZA65_RS07660 +0.5 1.9 DUF2857 domain-containing protein compare
DZA65_RS10320 +0.5 1.5 molecular chaperone compare
DZA65_RS09125 +0.5 3.0 D-alanyl-D-alanine endopeptidase compare
DZA65_RS22865 +0.5 1.8 hypothetical protein compare
DZA65_RS14025 +0.5 2.2 flagella synthesis chaperone protein FlgN compare
DZA65_RS04015 +0.5 1.7 hypothetical protein compare
DZA65_RS12775 +0.5 1.5 serine protease compare
DZA65_RS10585 +0.5 2.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS09390 +0.4 1.9 hypothetical protein compare
DZA65_RS00260 +0.4 3.5 DUF3053 domain-containing protein compare
DZA65_RS08375 +0.4 3.3 ABC transporter substrate-binding protein compare
DZA65_RS08090 +0.4 2.1 DHA2 family efflux MFS transporter permease subunit compare
DZA65_RS14485 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms