Experiment setATCH130 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DDA3937_RS20340 -4.2 -8.3 argininosuccinate lyase compare
DDA3937_RS20350 -4.2 -8.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
DDA3937_RS20360 -3.7 -14.4 phosphoenolpyruvate carboxylase compare
DDA3937_RS18305 -3.7 -15.1 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS12610 -3.6 -7.3 Grx4 family monothiol glutaredoxin compare
DDA3937_RS20890 -3.6 -15.2 argininosuccinate synthase compare
DDA3937_RS18480 -3.6 -8.7 phosphoglycerate dehydrogenase compare
DDA3937_RS18405 -3.5 -13.6 threonine synthase compare
DDA3937_RS02545 -3.5 -9.5 heavy metal translocating P-type ATPase compare
DDA3937_RS01665 -3.5 -17.3 glutamate synthase large subunit compare
DDA3937_RS09720 -3.4 -8.2 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS18310 -3.4 -12.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS12525 -3.4 -8.4 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS20155 -3.4 -9.8 dihydroxy-acid dehydratase compare
DDA3937_RS06075 -3.4 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS20130 -3.4 -10.6 ketol-acid reductoisomerase compare
DDA3937_RS00135 -3.4 -2.3 glutamate--ammonia ligase compare
DDA3937_RS01660 -3.4 -12.1 FAD-dependent oxidoreductase compare
DDA3937_RS04990 -3.4 -8.4 amino-acid N-acetyltransferase compare
DDA3937_RS01940 -3.3 -7.3 ornithine carbamoyltransferase compare
DDA3937_RS00125 -3.2 -2.2 nitrogen regulation protein NR(I) compare
DDA3937_RS20385 -3.2 -10.8 HTH-type transcriptional regulator MetR compare
DDA3937_RS20345 -3.2 -3.7 acetylglutamate kinase compare
DDA3937_RS00950 -3.1 -13.7 cystathionine gamma-synthase compare
DDA3937_RS18275 -3.1 -12.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS15960 -3.1 -10.0 pantoate--beta-alanine ligase compare
DDA3937_RS18585 -3.0 -2.8 adenylosuccinate synthase compare
DDA3937_RS01215 -3.0 -11.3 phosphoribosylamine--glycine ligase compare
DDA3937_RS09710 -3.0 -9.1 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS13930 -2.9 -4.5 transposase compare
DDA3937_RS01530 -2.9 -3.9 RNA polymerase factor sigma-54 compare
DDA3937_RS15815 -2.8 -1.1 tRNA-Val compare
DDA3937_RS09770 -2.8 -2.4 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS15965 -2.8 -15.2 aspartate 1-decarboxylase compare
DDA3937_RS15955 -2.8 -12.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DDA3937_RS01220 -2.8 -11.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS17425 -2.8 -12.2 diaminopimelate decarboxylase compare
DDA3937_RS18415 -2.7 -11.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS20355 -2.7 -10.3 acetylornithine deacetylase compare
DDA3937_RS10325 -2.7 -8.6 formyltetrahydrofolate deformylase compare
DDA3937_RS09725 -2.6 -7.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS18130 -2.6 -4.2 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS09730 -2.5 -11.0 histidinol-phosphate transaminase compare
DDA3937_RS02425 -2.5 -8.3 phosphoserine phosphatase compare
DDA3937_RS20150 -2.5 -8.4 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS15655 -2.4 -18.1 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS00890 -2.4 -9.7 glycerol kinase GlpK compare
DDA3937_RS06295 -2.4 -11.8 asparagine synthase B compare
DDA3937_RS10340 -2.4 -11.5 two-component system response regulator RssB compare
DDA3937_RS01815 -2.4 -6.7 cystathionine beta-lyase compare
DDA3937_RS04960 -2.4 -3.2 thymidylate synthase compare
DDA3937_RS01600 -2.4 -11.9 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS09735 -2.4 -11.0 histidinol dehydrogenase compare
DDA3937_RS01250 -2.3 -1.4 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS09705 -2.3 -8.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DDA3937_RS09590 -2.3 -4.3 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS13355 -2.3 -6.0 flagellar protein FliT compare
DDA3937_RS00655 -2.3 -5.4 aspartate 1-decarboxylase autocleavage activator PanM compare
DDA3937_RS06025 -2.2 -9.1 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS01590 -2.2 -4.7 BolA family iron metabolism protein IbaG compare
DDA3937_RS10540 -2.2 -2.3 HTH-type transcriptional regulator CysB compare
DDA3937_RS18125 -2.2 -12.4 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18120 -2.1 -9.8 3-isopropylmalate dehydrogenase compare
DDA3937_RS12915 -2.1 -18.6 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS19065 -2.1 -7.9 homoserine O-succinyltransferase compare
DDA3937_RS15510 -2.1 -6.9 aminopeptidase PepB compare
DDA3937_RS00895 -2.0 -9.0 aquaporin compare
DDA3937_RS15765 -2.0 -13.6 RNA polymerase sigma factor RpoE compare
DDA3937_RS09575 -2.0 -1.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS09715 -2.0 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS06040 -2.0 -3.2 DnaA inactivator Hda compare
DDA3937_RS01175 -2.0 -9.1 phosphomethylpyrimidine synthase ThiC compare
DDA3937_RS20535 -1.9 -8.8 orotate phosphoribosyltransferase compare
DDA3937_RS08400 -1.9 -2.2 H-NS histone family protein compare
DDA3937_RS13920 -1.9 -2.2 CcdB family protein compare
DDA3937_RS01170 -1.9 -6.1 thiamine phosphate synthase compare
DDA3937_RS15110 -1.9 -4.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS06685 -1.8 -4.9 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS12390 -1.8 -5.6 transcriptional regulator TyrR compare
DDA3937_RS09580 -1.8 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS14475 -1.8 -3.3 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS06235 -1.8 -7.7 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS12765 -1.7 -8.4 Fe-S cluster assembly protein SufD compare
DDA3937_RS01820 -1.7 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS16755 -1.7 -7.8 transcriptional repressor MprA compare
DDA3937_RS00010 -1.7 -9.5 transcriptional regulator AsnC compare
DDA3937_RS04945 -1.7 -7.9 RNA pyrophosphohydrolase compare
DDA3937_RS18115 -1.7 -7.4 2-isopropylmalate synthase compare
DDA3937_RS16935 -1.7 -2.8 phosphoadenylyl-sulfate reductase compare
DDA3937_RS06805 -1.6 -11.0 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS18135 -1.6 -4.2 siderophore-interacting protein compare
DDA3937_RS14095 -1.6 -1.7 ABC transporter ATP-binding protein compare
DDA3937_RS12770 -1.6 -4.8 Fe-S cluster assembly ATPase SufC compare
DDA3937_RS15335 -1.6 -4.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DDA3937_RS18170 -1.6 -6.4 acetolactate synthase large subunit compare
DDA3937_RS19510 -1.6 -3.2 peptidylprolyl isomerase A compare
DDA3937_RS03485 -1.6 -3.4 hypothetical protein compare
DDA3937_RS12575 -1.5 -2.2 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS10555 -1.5 -2.5 electron transport complex subunit RsxG compare
DDA3937_RS09585 -1.5 -1.9 thioredoxin-disulfide reductase compare
DDA3937_RS01155 -1.5 -6.6 thiazole synthase compare
DDA3937_RS17180 -1.5 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS04310 -1.5 -2.2 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS18410 -1.5 -4.1 homoserine kinase compare
DDA3937_RS05500 -1.5 -6.8 transcriptional regulator NrdR compare
DDA3937_RS16930 -1.5 -10.0 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS07115 -1.4 -9.7 GGDEF domain-containing protein compare
DDA3937_RS16945 -1.4 -9.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS20855 -1.4 -1.9 acyl carrier protein compare
DDA3937_RS17305 -1.4 -3.3 pyrroline-5-carboxylate reductase compare
DDA3937_RS04490 -1.4 -3.1 cysteine synthase A compare
DDA3937_RS16920 -1.4 -9.4 sulfate adenylyltransferase subunit CysN compare
DDA3937_RS04315 -1.4 -3.2 RnfH family protein compare
DDA3937_RS10675 -1.4 -1.4 ROK family transcriptional regulator compare
DDA3937_RS10475 -1.4 -5.2 anthranilate phosphoribosyltransferase compare
DDA3937_RS13335 -1.4 -1.3 IS200/IS605 family transposase compare
DDA3937_RS05150 -1.4 -4.8 sigma E protease regulator RseP compare
DDA3937_RS04480 -1.4 -5.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS12780 -1.4 -3.1 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS18490 -1.4 -5.6 LysR family transcriptional regulator ArgP compare
DDA3937_RS01165 -1.4 -5.2 HesA/MoeB/ThiF family protein compare
DDA3937_RS16285 -1.4 -3.6 winged helix-turn-helix transcriptional regulator compare
DDA3937_RS19590 -1.3 -2.0 intracellular growth attenuator family protein compare
DDA3937_RS01000 -1.3 -3.0 glutamate racemase compare
DDA3937_RS13180 -1.3 -4.8 biofilm formation regulator BssS compare
DDA3937_RS05645 -1.3 -9.1 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS11080 -1.3 -3.3 exodeoxyribonuclease V subunit beta compare
DDA3937_RS07760 -1.3 -3.0 iron ABC transporter permease compare
DDA3937_RS22175 -1.3 -2.4 IS3 family transposase compare
DDA3937_RS17990 -1.3 -2.2 DNA gyrase inhibitor YacG compare
DDA3937_RS16490 -1.3 -1.4 hypothetical protein compare
DDA3937_RS12775 -1.3 -8.7 Fe-S cluster assembly protein SufB compare
DDA3937_RS19615 -1.3 -2.5 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06350 -1.3 -4.2 replication initiation negative regulator SeqA compare
DDA3937_RS19785 -1.3 -2.8 gluconate operon transcriptional repressor GntR compare
DDA3937_RS13040 -1.2 -5.2 NAD(P)/FAD-dependent oxidoreductase compare
DDA3937_RS12760 -1.2 -5.8 cysteine desulfurase SufS compare
DDA3937_RS17955 -1.2 -5.2 carboxylating nicotinate-nucleotide diphosphorylase compare
DDA3937_RS10295 -1.2 -3.8 NAD(P)H nitroreductase compare
DDA3937_RS10580 -1.2 -1.9 transcription modulator YdgT compare
DDA3937_RS08595 -1.2 -7.6 iron ABC transporter permease compare
DDA3937_RS16925 -1.2 -8.1 sulfate adenylyltransferase subunit CysD compare
DDA3937_RS07750 -1.2 -3.3 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS01150 -1.2 -7.9 2-iminoacetate synthase ThiH compare
DDA3937_RS12755 -1.2 -5.3 cysteine desulfuration protein SufE compare
DDA3937_RS16530 -1.2 -8.7 glutamate-5-semialdehyde dehydrogenase compare
DDA3937_RS17995 -1.2 -2.8 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS15720 -1.2 -2.8 pyridoxine 5'-phosphate synthase compare
DDA3937_RS15485 -1.2 -5.0 nucleoside-diphosphate kinase compare
DDA3937_RS19915 -1.1 -1.1 class I adenylate cyclase compare
DDA3937_RS23305 -1.1 -2.2 hypothetical protein compare
DDA3937_RS14665 -1.1 -5.0 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS08600 -1.1 -5.1 ABC transporter ATP-binding protein compare
DDA3937_RS16250 -1.1 -4.2 nicotinamide-nucleotide amidase compare
DDA3937_RS08725 -1.1 -4.6 class IV adenylate cyclase compare
DDA3937_RS00945 -1.1 -1.6 met regulon transcriptional regulator MetJ compare
DDA3937_RS19880 -1.1 -4.6 DNA helicase II compare
DDA3937_RS13145 -1.1 -2.2 23S rRNA accumulation protein YceD compare
DDA3937_RS17300 -1.1 -6.1 YggS family pyridoxal phosphate-dependent enzyme compare
DDA3937_RS14235 -1.1 -3.3 HyaD/HybD family hydrogenase maturation endopeptidase compare
DDA3937_RS06180 -1.1 -2.6 ribosome silencing factor compare
DDA3937_RS01740 -1.1 -2.4 outer membrane channel protein TolC compare
DDA3937_RS04830 -1.1 -2.8 hypothetical protein compare
DDA3937_RS06020 -1.1 -5.4 phosphoribosylglycinamide formyltransferase compare
DDA3937_RS15770 -1.1 -8.1 L-aspartate oxidase compare
DDA3937_RS04895 -1.1 -2.2 oxidative damage protection protein compare
DDA3937_RS05470 -1.1 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS18440 -1.1 -5.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
DDA3937_RS18190 -1.1 -3.2 hypothetical protein compare
DDA3937_RS00795 -1.1 -3.1 phage tail protein compare
DDA3937_RS20085 -1.1 -3.2 exopolyphosphatase compare
DDA3937_RS16940 -1.1 -6.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS09550 -1.1 -2.3 cold shock-like protein CspD compare
DDA3937_RS03300 -1.1 -0.9 site-specific tyrosine recombinase XerD compare
DDA3937_RS08510 -1.1 -6.2 biotin synthase BioB compare
DDA3937_RS14870 -1.0 -1.4 YjfB family protein compare
DDA3937_RS02790 -1.0 -1.4 YqjK-like family protein compare
DDA3937_RS10570 -1.0 -4.7 electron transport complex subunit RsxB compare
DDA3937_RS10485 -1.0 -4.3 anthranilate synthase component 1 compare
DDA3937_RS14660 -1.0 -5.7 enterobactin transporter EntS compare
DDA3937_RS14695 -1.0 -6.1 enterochelin esterase compare
DDA3937_RS06545 -1.0 -5.2 quinolinate synthase NadA compare
DDA3937_RS18270 -1.0 -4.0 Co2+/Mg2+ efflux protein ApaG compare
DDA3937_RS15260 -1.0 -5.3 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit conserved
DDA3937_RS09195 -1.0 -1.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS17110 -1.0 -6.7 inorganic triphosphatase compare
DDA3937_RS18980 -1.0 -3.7 fumarate reductase subunit FrdD compare
DDA3937_RS10965 -1.0 -4.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
DDA3937_RS03990 -1.0 -1.9 CopG family transcriptional regulator compare
DDA3937_RS18010 -1.0 -1.0 DUF721 domain-containing protein compare
DDA3937_RS17015 -1.0 -8.3 GTP diphosphokinase compare
DDA3937_RS06985 -1.0 -2.5 type I addiction module toxin, SymE family compare
DDA3937_RS01520 -1.0 -4.5 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS15750 -0.9 -2.3 SoxR-reducing system protein RseC compare
DDA3937_RS13170 -0.9 -5.5 dihydroorotase compare
DDA3937_RS23045 -0.9 -1.0 stress response protein AzuC compare
DDA3937_RS15265 -0.9 -7.3 MdtB/MuxB family multidrug efflux RND transporter permease subunit compare
DDA3937_RS08145 -0.9 -2.2 metal ABC transporter permease compare
DDA3937_RS10410 -0.9 -2.0 IS200/IS605 family transposase compare
DDA3937_RS06655 -0.9 -3.6 6-phosphogluconolactonase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms