Experiment setATCH129 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DDA3937_RS20340 -4.5 -10.4 argininosuccinate lyase compare
DDA3937_RS20345 -4.1 -5.5 acetylglutamate kinase compare
DDA3937_RS12610 -4.1 -6.2 Grx4 family monothiol glutaredoxin compare
DDA3937_RS20155 -4.1 -14.9 dihydroxy-acid dehydratase compare
DDA3937_RS01940 -3.8 -7.6 ornithine carbamoyltransferase compare
DDA3937_RS01660 -3.6 -10.1 FAD-dependent oxidoreductase compare
DDA3937_RS18480 -3.5 -7.8 phosphoglycerate dehydrogenase compare
DDA3937_RS02545 -3.5 -8.0 heavy metal translocating P-type ATPase compare
DDA3937_RS01665 -3.4 -17.8 glutamate synthase large subunit compare
DDA3937_RS18585 -3.4 -2.7 adenylosuccinate synthase compare
DDA3937_RS20360 -3.4 -12.0 phosphoenolpyruvate carboxylase compare
DDA3937_RS04990 -3.3 -8.1 amino-acid N-acetyltransferase compare
DDA3937_RS09725 -3.2 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS15955 -3.2 -12.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DDA3937_RS00135 -3.2 -2.1 glutamate--ammonia ligase compare
DDA3937_RS15960 -3.2 -8.2 pantoate--beta-alanine ligase compare
DDA3937_RS20890 -3.2 -13.0 argininosuccinate synthase compare
DDA3937_RS12525 -3.2 -7.5 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS18405 -3.1 -11.4 threonine synthase compare
DDA3937_RS18305 -3.1 -9.8 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS18310 -3.0 -12.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS09590 -3.0 -4.1 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS20130 -3.0 -8.9 ketol-acid reductoisomerase compare
DDA3937_RS15965 -3.0 -12.4 aspartate 1-decarboxylase compare
DDA3937_RS09575 -2.9 -1.7 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS09720 -2.9 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS20350 -2.9 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
DDA3937_RS10325 -2.9 -9.7 formyltetrahydrofolate deformylase compare
DDA3937_RS20385 -2.9 -9.8 HTH-type transcriptional regulator MetR compare
DDA3937_RS09730 -2.8 -11.8 histidinol-phosphate transaminase compare
DDA3937_RS20150 -2.8 -9.9 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS17425 -2.8 -11.9 diaminopimelate decarboxylase compare
DDA3937_RS00655 -2.7 -6.6 aspartate 1-decarboxylase autocleavage activator PanM compare
DDA3937_RS18415 -2.7 -13.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS00950 -2.7 -11.0 cystathionine gamma-synthase compare
DDA3937_RS20355 -2.6 -10.5 acetylornithine deacetylase compare
DDA3937_RS18275 -2.6 -9.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS01220 -2.6 -12.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS09710 -2.5 -6.9 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS15655 -2.5 -17.0 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS06295 -2.5 -11.7 asparagine synthase B compare
DDA3937_RS05575 -2.5 -1.6 MFS transporter compare
DDA3937_RS00895 -2.4 -12.2 aquaporin compare
DDA3937_RS09735 -2.4 -11.4 histidinol dehydrogenase compare
DDA3937_RS01215 -2.4 -5.8 phosphoribosylamine--glycine ligase compare
DDA3937_RS18130 -2.4 -3.0 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS09715 -2.3 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS06025 -2.3 -8.7 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS08400 -2.3 -2.5 H-NS histone family protein compare
DDA3937_RS02425 -2.3 -7.6 phosphoserine phosphatase compare
DDA3937_RS15765 -2.3 -15.2 RNA polymerase sigma factor RpoE compare
DDA3937_RS01815 -2.2 -4.8 cystathionine beta-lyase compare
DDA3937_RS01170 -2.2 -7.0 thiamine phosphate synthase compare
DDA3937_RS18125 -2.2 -13.3 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS10340 -2.2 -11.0 two-component system response regulator RssB compare
DDA3937_RS15335 -2.2 -5.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DDA3937_RS00890 -2.1 -8.1 glycerol kinase GlpK compare
DDA3937_RS12915 -2.1 -18.4 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS17305 -2.1 -3.4 pyrroline-5-carboxylate reductase compare
DDA3937_RS01530 -2.1 -4.2 RNA polymerase factor sigma-54 compare
DDA3937_RS01175 -2.1 -10.3 phosphomethylpyrimidine synthase ThiC compare
DDA3937_RS16935 -2.0 -2.7 phosphoadenylyl-sulfate reductase compare
DDA3937_RS09705 -2.0 -6.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DDA3937_RS20535 -2.0 -11.6 orotate phosphoribosyltransferase compare
DDA3937_RS06075 -2.0 -2.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS19065 -1.9 -7.4 homoserine O-succinyltransferase compare
DDA3937_RS17990 -1.9 -2.1 DNA gyrase inhibitor YacG compare
DDA3937_RS08585 -1.9 -2.9 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS12780 -1.8 -5.1 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS13355 -1.8 -4.9 flagellar protein FliT compare
DDA3937_RS04490 -1.8 -3.2 cysteine synthase A compare
DDA3937_RS15110 -1.8 -3.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS01600 -1.8 -7.8 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS10200 -1.8 -3.6 YebY family protein compare
DDA3937_RS12390 -1.8 -6.3 transcriptional regulator TyrR compare
DDA3937_RS12760 -1.8 -7.8 cysteine desulfurase SufS compare
DDA3937_RS01165 -1.8 -5.7 HesA/MoeB/ThiF family protein compare
DDA3937_RS06685 -1.7 -4.0 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS03485 -1.7 -2.4 hypothetical protein compare
DDA3937_RS15510 -1.7 -6.4 aminopeptidase PepB compare
DDA3937_RS01155 -1.7 -6.0 thiazole synthase compare
DDA3937_RS05500 -1.7 -7.1 transcriptional regulator NrdR compare
DDA3937_RS01590 -1.6 -4.0 BolA family iron metabolism protein IbaG compare
DDA3937_RS12765 -1.6 -7.3 Fe-S cluster assembly protein SufD compare
DDA3937_RS12770 -1.6 -5.2 Fe-S cluster assembly ATPase SufC compare
DDA3937_RS04945 -1.6 -6.5 RNA pyrophosphohydrolase compare
DDA3937_RS12775 -1.6 -10.8 Fe-S cluster assembly protein SufB compare
DDA3937_RS05160 -1.6 -2.5 molecular chaperone Skp compare
DDA3937_RS18120 -1.6 -7.4 3-isopropylmalate dehydrogenase compare
DDA3937_RS04480 -1.6 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS04315 -1.5 -4.0 RnfH family protein compare
DDA3937_RS18170 -1.5 -7.2 acetolactate synthase large subunit compare
DDA3937_RS18115 -1.5 -6.0 2-isopropylmalate synthase compare
DDA3937_RS18490 -1.5 -7.3 LysR family transcriptional regulator ArgP compare
DDA3937_RS17150 -1.5 -3.1 gamma-glutamylcyclotransferase compare
DDA3937_RS15720 -1.4 -2.3 pyridoxine 5'-phosphate synthase compare
DDA3937_RS05150 -1.4 -4.6 sigma E protease regulator RseP compare
DDA3937_RS02410 -1.4 -2.2 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS06805 -1.4 -9.2 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS15485 -1.4 -3.1 nucleoside-diphosphate kinase compare
DDA3937_RS18410 -1.4 -4.8 homoserine kinase compare
DDA3937_RS16755 -1.4 -5.8 transcriptional repressor MprA compare
DDA3937_RS16925 -1.3 -8.4 sulfate adenylyltransferase subunit CysD compare
DDA3937_RS04125 -1.3 -4.8 acetyltransferase compare
DDA3937_RS08600 -1.3 -6.1 ABC transporter ATP-binding protein compare
DDA3937_RS04960 -1.3 -2.0 thymidylate synthase compare
DDA3937_RS13060 -1.3 -1.7 penicillin-binding protein activator LpoB compare
DDA3937_RS06545 -1.3 -5.4 quinolinate synthase NadA compare
DDA3937_RS17955 -1.3 -4.1 carboxylating nicotinate-nucleotide diphosphorylase compare
DDA3937_RS15260 -1.3 -6.9 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit conserved
DDA3937_RS12450 -1.3 -2.5 peptide ABC transporter permease SapC compare
DDA3937_RS07115 -1.3 -8.9 GGDEF domain-containing protein compare
DDA3937_RS10570 -1.3 -5.6 electron transport complex subunit RsxB compare
DDA3937_RS01150 -1.3 -9.0 2-iminoacetate synthase ThiH compare
DDA3937_RS00125 -1.3 -1.7 nitrogen regulation protein NR(I) compare
DDA3937_RS17180 -1.3 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS06655 -1.3 -5.1 6-phosphogluconolactonase compare
DDA3937_RS16530 -1.3 -8.9 glutamate-5-semialdehyde dehydrogenase compare
DDA3937_RS14475 -1.3 -3.4 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS12755 -1.2 -6.0 cysteine desulfuration protein SufE compare
DDA3937_RS10475 -1.2 -4.4 anthranilate phosphoribosyltransferase compare
DDA3937_RS16930 -1.2 -8.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS20265 -1.2 -0.9 YeeE/YedE family protein compare
DDA3937_RS05645 -1.2 -8.1 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS16920 -1.2 -7.6 sulfate adenylyltransferase subunit CysN compare
DDA3937_RS00010 -1.2 -5.6 transcriptional regulator AsnC compare
DDA3937_RS06350 -1.2 -3.9 replication initiation negative regulator SeqA compare
DDA3937_RS17710 -1.1 -5.2 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS09740 -1.1 -2.5 ATP phosphoribosyltransferase compare
DDA3937_RS23335 -1.1 -2.5 leu operon leader peptide compare
DDA3937_RS16945 -1.1 -8.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS12800 -1.1 -3.4 AI-2E family transporter YdiK compare
DDA3937_RS10370 -1.1 -3.3 YchE family NAAT transporter compare
DDA3937_RS18010 -1.1 -1.1 DUF721 domain-containing protein compare
DDA3937_RS05555 -1.1 -6.0 2-dehydropantoate 2-reductase compare
DDA3937_RS00830 -1.1 -2.5 NUDIX domain-containing protein compare
DDA3937_RS03160 -1.1 -3.0 VOC family protein compare
DDA3937_RS12575 -1.1 -1.7 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS09670 -1.1 -2.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS08510 -1.1 -6.3 biotin synthase BioB compare
DDA3937_RS13040 -1.1 -4.5 NAD(P)/FAD-dependent oxidoreductase compare
DDA3937_RS10460 -1.1 -3.4 tryptophan synthase subunit alpha compare
DDA3937_RS08595 -1.1 -6.7 iron ABC transporter permease compare
DDA3937_RS15265 -1.1 -8.6 MdtB/MuxB family multidrug efflux RND transporter permease subunit compare
DDA3937_RS10985 -1.1 -1.5 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS15815 -1.1 -1.1 tRNA-Val compare
DDA3937_RS19880 -1.1 -4.9 DNA helicase II compare
DDA3937_RS17015 -1.0 -9.1 GTP diphosphokinase compare
DDA3937_RS13170 -1.0 -6.0 dihydroorotase compare
DDA3937_RS10560 -1.0 -4.0 electron transport complex subunit RsxD compare
DDA3937_RS15270 -1.0 -7.4 multidrug efflux RND transporter permease subunit MdtC conserved
DDA3937_RS11250 -1.0 -2.2 YoaH family protein compare
DDA3937_RS09550 -1.0 -2.6 cold shock-like protein CspD compare
DDA3937_RS09195 -1.0 -2.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS08590 -1.0 -6.1 iron ABC transporter substrate-binding protein compare
DDA3937_RS15770 -1.0 -6.6 L-aspartate oxidase compare
DDA3937_RS01820 -1.0 -2.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS10485 -1.0 -4.5 anthranilate synthase component 1 compare
DDA3937_RS07760 -1.0 -2.3 iron ABC transporter permease compare
DDA3937_RS02345 -1.0 -2.4 hypothetical protein compare
DDA3937_RS07410 -1.0 -2.3 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS01000 -1.0 -2.0 glutamate racemase compare
DDA3937_RS12350 -1.0 -1.1 thiol peroxidase compare
DDA3937_RS07750 -1.0 -2.2 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS17110 -1.0 -5.6 inorganic triphosphatase compare
DDA3937_RS16940 -1.0 -6.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS10540 -1.0 -1.1 HTH-type transcriptional regulator CysB compare
DDA3937_RS15865 -1.0 -6.8 dGTPase compare
DDA3937_RS15700 -0.9 -7.3 sensor domain-containing diguanylate cyclase compare
DDA3937_RS10410 -0.9 -2.1 IS200/IS605 family transposase compare
DDA3937_RS10965 -0.9 -4.3 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
DDA3937_RS03285 -0.9 -1.3 protein YgfX compare
DDA3937_RS02815 -0.9 -2.2 transcriptional regulator ExuR compare
DDA3937_RS10405 -0.9 -1.6 cardiolipin synthase compare
DDA3937_RS16535 -0.9 -2.2 glutamate 5-kinase compare
DDA3937_RS23235 -0.9 -2.8 hypothetical protein compare
DDA3937_RS13110 -0.9 -3.3 beta-ketoacyl-ACP synthase II compare
DDA3937_RS21260 -0.9 -1.9 DUF2623 domain-containing protein compare
DDA3937_RS13785 -0.9 -1.7 helix-turn-helix transcriptional regulator compare
DDA3937_RS07765 -0.9 -2.5 ABC transporter ATP-binding protein compare
DDA3937_RS14695 -0.9 -5.1 enterochelin esterase compare
DDA3937_RS02645 -0.9 -2.2 DUF1778 domain-containing protein compare
DDA3937_RS02325 -0.9 -0.9 HTH-type transcriptional activator RhaS compare
DDA3937_RS13930 -0.9 -1.5 transposase compare
DDA3937_RS19510 -0.9 -1.4 peptidylprolyl isomerase A compare
DDA3937_RS02890 -0.9 -3.1 FAD:protein FMN transferase ApbE compare
DDA3937_RS06235 -0.9 -3.4 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS17840 -0.9 -2.6 four-carbon acid sugar kinase family protein compare
DDA3937_RS21045 -0.9 -5.8 ROK family transcriptional regulator compare
DDA3937_RS00155 -0.9 -4.0 fatty acid biosynthesis protein FabY compare
DDA3937_RS16250 -0.9 -3.0 nicotinamide-nucleotide amidase compare
DDA3937_RS10470 -0.9 -2.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS16050 -0.9 -1.3 ribonuclease HI compare
DDA3937_RS15305 -0.9 -1.6 TIM barrel protein compare
DDA3937_RS04430 -0.9 -1.9 Hcp family type VI secretion system effector compare
DDA3937_RS19615 -0.9 -1.8 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS16095 -0.9 -1.8 16S ribosomal RNA compare
DDA3937_RS09345 -0.8 -1.0 IS200/IS605 family transposase compare
DDA3937_RS14665 -0.8 -3.7 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS02550 -0.8 -2.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms