Experiment setATCH129 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS18610 +6.6 33.2 RNA chaperone Hfq compare
DDA3937_RS13555 +5.4 30.6 flagellar motor stator protein MotA compare
DDA3937_RS13550 +5.0 23.9 flagellar motor protein MotB compare
DDA3937_RS15705 +4.9 29.6 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS13565 +4.8 23.6 flagellar transcriptional regulator FlhD compare
DDA3937_RS13560 +4.6 23.5 flagellar transcriptional regulator FlhC compare
DDA3937_RS11465 +4.5 27.4 EAL domain-containing protein compare
DDA3937_RS13340 +4.4 18.6 flagellin FliC compare
DDA3937_RS01695 +4.4 7.4 divisome-associated lipoprotein YraP compare
DDA3937_RS13300 +4.2 17.6 RNA polymerase sigma factor FliA compare
DDA3937_RS13435 +4.2 28.8 flagellar hook-associated protein FlgK compare
DDA3937_RS13495 +4.1 13.4 flagellar export chaperone FlgN compare
DDA3937_RS02685 +4.0 8.8 hypothetical protein compare
DDA3937_RS13430 +3.8 18.2 flagellar hook-associated protein FlgL compare
DDA3937_RS13405 +3.8 20.7 flagellar motor switch protein FliN compare
DDA3937_RS05615 +3.7 1.6 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS13490 +3.7 2.0 anti-sigma-28 factor FlgM compare
DDA3937_RS13420 +3.6 13.5 flagellar biosynthesis protein FliQ compare
DDA3937_RS13380 +3.6 22.5 flagellum-specific ATP synthase FliI compare
DDA3937_RS13485 +3.5 12.4 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS20820 +3.5 18.3 two-component system response regulator VfmH compare
DDA3937_RS13385 +3.5 11.2 flagella biosynthesis chaperone FliJ compare
DDA3937_RS13400 +3.4 21.5 flagellar motor switch protein FliM compare
DDA3937_RS13505 +3.4 22.0 flagellar biosynthesis protein FlhA compare
DDA3937_RS13445 +3.4 14.0 flagellar basal body P-ring protein FlgI compare
DDA3937_RS13510 +3.4 20.5 flagellar type III secretion system protein FlhB compare
DDA3937_RS20815 +3.4 24.6 two-component system sensor histidine kinase VfmI compare
DDA3937_RS13365 +3.4 21.9 flagellar M-ring protein FliF compare
DDA3937_RS13370 +3.4 18.4 flagellar motor switch protein FliG compare
DDA3937_RS20830 +3.3 20.3 ABC transporter ATP-binding protein compare
DDA3937_RS13410 +3.3 13.6 flagellar biosynthetic protein FliO compare
DDA3937_RS13390 +3.3 13.8 flagellar hook-length control protein FliK compare
DDA3937_RS20835 +3.3 19.3 AraC family transcriptional regulator VfmE compare
DDA3937_RS13330 +3.3 25.9 methyltransferase regulatory domain-containing protein compare
DDA3937_RS13320 +3.2 20.3 ATP-grasp domain-containing protein compare
DDA3937_RS13480 +3.2 14.3 flagellar basal body rod protein FlgB compare
DDA3937_RS13440 +3.1 15.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS13470 +3.1 18.3 flagellar hook assembly protein FlgD compare
DDA3937_RS13450 +3.1 16.4 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13425 +3.1 15.7 flagellar type III secretion system protein FliR compare
DDA3937_RS06735 +3.1 15.3 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS13325 +3.1 15.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS16110 +3.1 19.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS13475 +3.0 9.9 flagellar basal body rod protein FlgC compare
DDA3937_RS13455 +3.0 12.1 flagellar basal-body rod protein FlgG compare
DDA3937_RS13465 +3.0 23.7 flagellar hook protein FlgE compare
DDA3937_RS13375 +3.0 7.9 flagellar assembly protein FliH compare
DDA3937_RS13460 +2.9 14.6 flagellar basal body rod protein FlgF compare
DDA3937_RS13415 +2.9 16.5 flagellar type III secretion system pore protein FliP compare
DDA3937_RS14630 +2.8 11.6 tRNA-Arg compare
DDA3937_RS14380 +2.6 6.3 acetate kinase compare
DDA3937_RS00055 +2.5 22.3 ribose operon transcriptional repressor RbsR compare
DDA3937_RS10840 +2.5 10.6 hypothetical protein compare
DDA3937_RS13395 +2.5 11.5 flagellar basal body-associated protein FliL compare
DDA3937_RS10850 +2.4 16.6 virulence factor compare
DDA3937_RS10845 +2.4 17.8 virulence factor SrfB compare
DDA3937_RS05320 +2.4 5.3 hypothetical protein compare
DDA3937_RS13360 +2.4 5.0 flagellar hook-basal body complex protein FliE compare
DDA3937_RS18675 +2.4 6.9 ABC transporter ATP-binding protein compare
DDA3937_RS19660 +2.3 14.7 4-alpha-glucanotransferase compare
DDA3937_RS13315 +2.3 15.0 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS11970 +2.2 7.9 RNA chaperone ProQ compare
DDA3937_RS05420 +2.1 13.2 exonuclease subunit SbcD compare
DDA3937_RS20560 +2.1 5.4 L-Ala-D/L-Glu epimerase compare
DDA3937_RS05415 +2.1 14.1 hypothetical protein compare
DDA3937_RS13545 +2.0 14.5 chemotaxis protein CheA compare
DDA3937_RS16540 +2.0 5.9 sigma factor-binding protein Crl compare
DDA3937_RS06740 +1.9 10.3 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS13520 +1.9 9.4 chemotaxis response regulator CheY compare
DDA3937_RS07785 +1.9 2.8 OsmC family protein compare
DDA3937_RS18670 +1.8 6.1 ABC transporter permease compare
DDA3937_RS20455 +1.8 3.5 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS14465 +1.8 2.3 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS13540 +1.7 8.0 chemotaxis protein CheW compare
DDA3937_RS01920 +1.7 8.0 aspartate carbamoyltransferase regulatory subunit compare
DDA3937_RS22360 +1.7 13.4 deoxyribonuclease compare
DDA3937_RS00050 +1.6 9.5 ribokinase compare
DDA3937_RS13310 +1.6 7.9 FkbM family methyltransferase compare
DDA3937_RS00630 +1.6 3.6 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DDA3937_RS20290 +1.5 8.9 transcription/translation regulatory transformer protein RfaH compare
DDA3937_RS10500 +1.5 6.1 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS19665 +1.5 6.3 maltodextrin phosphorylase compare
DDA3937_RS18665 +1.5 12.7 GDP-mannose 4,6-dehydratase compare
DDA3937_RS00640 +1.5 4.4 cell division ATP-binding protein FtsE compare
DDA3937_RS05035 +1.4 2.8 cysteine desulfurase sulfur acceptor subunit CsdE compare
DDA3937_RS18685 +1.4 9.5 WbeA compare
DDA3937_RS05775 +1.4 2.5 adenine phosphoribosyltransferase compare
DDA3937_RS00900 +1.4 3.9 cell division protein ZapB compare
DDA3937_RS07715 +1.4 8.6 TonB-dependent receptor compare
DDA3937_RS07710 +1.3 5.4 diaminobutyrate--2-oxoglutarate transaminase compare
DDA3937_RS20475 +1.3 2.9 glycosyltransferase family 4 protein compare
DDA3937_RS04140 +1.3 1.2 hypothetical protein compare
DDA3937_RS22280 +1.3 1.9 GpE family phage tail protein compare
DDA3937_RS12595 +1.3 8.8 transcriptional regulator SlyA compare
DDA3937_RS02790 +1.3 1.5 YqjK-like family protein compare
DDA3937_RS13530 +1.3 6.7 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS22980 +1.3 3.2 IS3 family transposase compare
DDA3937_RS08855 +1.2 3.2 biotin carboxyl carrier domain-containing protein compare
DDA3937_RS19875 +1.2 6.0 magnesium/cobalt transporter CorA compare
DDA3937_RS07100 +1.2 2.0 D-amino-acid transaminase compare
DDA3937_RS13790 +1.2 4.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS21605 +1.2 4.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS16550 +1.2 3.1 YfiR family protein compare
DDA3937_RS02755 +1.2 3.1 diacylglycerol kinase compare
DDA3937_RS14950 +1.2 5.5 hypothetical protein compare
DDA3937_RS16005 +1.1 3.6 YacC family pilotin-like protein compare
DDA3937_RS13305 +1.1 3.9 hypothetical protein compare
DDA3937_RS18660 +1.1 9.7 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS14340 +1.1 5.6 transcriptional regulator LrhA compare
DDA3937_RS21310 +1.1 2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS10375 +1.1 10.4 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS11185 +1.1 5.3 disulfide bond formation protein DsbB compare
DDA3937_RS19005 +1.1 2.2 DUF4156 domain-containing protein compare
DDA3937_RS10380 +1.1 9.6 oligopeptide ABC transporter permease OppB compare
DDA3937_RS13350 +1.1 2.6 flagellar export chaperone FliS compare
DDA3937_RS04555 +1.1 2.8 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS10385 +1.1 9.2 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10095 +1.1 5.3 zinc ABC transporter ATP-binding protein ZnuC compare
DDA3937_RS13945 +1.1 6.3 hypothetical protein compare
DDA3937_RS15780 +1.0 4.2 ATP-dependent RNA helicase SrmB compare
DDA3937_RS01855 +1.0 2.0 aminoimidazole riboside kinase compare
DDA3937_RS11965 +1.0 7.2 carboxy terminal-processing peptidase compare
DDA3937_RS18655 +1.0 7.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS02765 +1.0 7.4 zinc uptake transcriptional repressor Zur compare
DDA3937_RS06270 +1.0 1.7 tRNA-Met compare
DDA3937_RS10390 +1.0 8.9 ABC transporter ATP-binding protein compare
DDA3937_RS14185 +1.0 1.4 glutamine amidotransferase compare
DDA3937_RS10090 +1.0 6.2 zinc ABC transporter permease subunit ZnuB compare
DDA3937_RS13155 +1.0 3.5 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DDA3937_RS06360 +1.0 1.7 EamA family transporter compare
DDA3937_RS16685 +1.0 1.0 oxalurate catabolism protein HpxZ compare
DDA3937_RS10775 +1.0 6.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS00100 +1.0 6.7 thiol:disulfide interchange protein DsbA compare
DDA3937_RS13935 +1.0 4.1 hypothetical protein compare
DDA3937_RS17830 +1.0 1.4 DeoR/GlpR transcriptional regulator compare
DDA3937_RS21960 +1.0 3.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS17930 +1.0 3.0 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
DDA3937_RS10100 +0.9 4.9 zinc ABC transporter substrate-binding protein ZnuA compare
DDA3937_RS06455 +0.9 2.0 succinate dehydrogenase iron-sulfur subunit compare
DDA3937_RS20740 +0.9 4.3 type III PLP-dependent enzyme compare
DDA3937_RS03785 +0.9 4.1 DoxX family protein compare
DDA3937_RS00920 +0.9 2.3 ATP-dependent protease subunit HslV compare
DDA3937_RS08100 +0.9 2.4 triphosphoribosyl-dephospho-CoA synthase compare
DDA3937_RS02740 +0.9 1.9 chorismate lyase compare
DDA3937_RS01675 +0.9 6.4 aerobic respiration two-component sensor histidine kinase ArcB compare
DDA3937_RS18330 +0.9 1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS20410 +0.9 1.7 protein-export chaperone SecB compare
DDA3937_RS00140 +0.9 3.9 ribosome-dependent GTPase TypA compare
DDA3937_RS04405 +0.9 3.5 GNAT family N-acetyltransferase compare
DDA3937_RS03400 +0.9 1.7 hypothetical protein compare
DDA3937_RS08030 +0.9 5.1 ABC transporter substrate-binding protein compare
DDA3937_RS00755 +0.9 2.3 tRNA (cytidine(34)-2'-O)-methyltransferase compare
DDA3937_RS10480 +0.9 1.4 glutamine amidotransferase compare
DDA3937_RS13965 +0.9 2.6 CcdB family protein compare
DDA3937_RS08645 +0.9 4.4 ATP-dependent RNA helicase RhlE compare
DDA3937_RS10060 +0.9 2.0 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS10275 +0.9 2.6 DUF1315 family protein compare
DDA3937_RS21890 +0.9 2.4 DUF3363 domain-containing protein compare
DDA3937_RS11625 +0.9 3.6 type III secretion inner membrane ring lipoprotein SctJ compare
DDA3937_RS17665 +0.9 1.4 PAAR domain-containing protein compare
DDA3937_RS16065 +0.9 2.9 murein transglycosylase D compare
DDA3937_RS19360 +0.9 4.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS13615 +0.8 1.8 phage holin family protein compare
DDA3937_RS00980 +0.8 5.3 HTH-type transcriptional repressor FabR compare
DDA3937_RS23485 +0.8 1.5 hypothetical protein compare
DDA3937_RS18680 +0.8 3.9 GDP-L-fucose synthase compare
DDA3937_RS03410 +0.8 6.7 polysaccharide biosynthesis protein compare
DDA3937_RS17670 +0.8 2.0 GPW/gp25 family protein compare
DDA3937_RS10435 +0.8 1.4 septation protein A compare
DDA3937_RS21380 +0.8 5.5 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DDA3937_RS13250 +0.8 5.7 Lon protease family protein compare
DDA3937_RS21385 +0.8 4.6 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
DDA3937_RS21110 +0.8 2.5 ABC transporter permease compare
DDA3937_RS06445 +0.8 5.1 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS03190 +0.8 3.6 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
DDA3937_RS02855 +0.8 1.4 hypothetical protein compare
DDA3937_RS23115 +0.8 1.6 hypothetical protein compare
DDA3937_RS19715 +0.8 1.8 thiosulfate sulfurtransferase GlpE compare
DDA3937_RS20745 +0.8 3.3 hypothetical protein compare
DDA3937_RS08870 +0.8 3.5 biotin-dependent carboxyltransferase compare
DDA3937_RS10395 +0.8 7.0 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS06440 +0.8 5.0 succinate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS20970 +0.8 3.5 mannitol operon repressor compare
DDA3937_RS21130 +0.8 4.4 glucokinase compare
DDA3937_RS03615 +0.8 3.1 VOC family protein compare
DDA3937_RS10650 +0.8 4.6 mannose-6-phosphate isomerase compare
DDA3937_RS14345 +0.7 3.9 pyridoxal phosphate-dependent aminotransferase compare
DDA3937_RS20700 +0.7 1.2 hypothetical protein compare
DDA3937_RS20755 +0.7 1.6 acyl carrier protein compare
DDA3937_RS09070 +0.7 1.2 hypothetical protein compare
DDA3937_RS03220 +0.7 2.7 DUF1435 domain-containing protein compare
DDA3937_RS19135 +0.7 3.8 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
DDA3937_RS18500 +0.7 5.2 IclR family transcriptional regulator compare
DDA3937_RS21370 +0.7 3.7 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
DDA3937_RS10890 +0.7 2.1 ABC transporter permease subunit compare
DDA3937_RS16740 +0.7 3.8 MFS transporter compare
DDA3937_RS20885 +0.7 1.9 MarR family transcriptional regulator compare
DDA3937_RS02835 +0.7 3.2 altronate dehydratase compare
DDA3937_RS19935 +0.7 1.7 protoheme IX biogenesis protein HemY compare
DDA3937_RS09435 +0.7 2.3 inner membrane protein YbjM compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms