Experiment setATCH128 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -4.8 -4.6 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS18585 -4.7 -3.1 adenylosuccinate synthase compare
DDA3937_RS06075 -4.4 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS20360 -4.3 -18.7 phosphoenolpyruvate carboxylase compare
DDA3937_RS20340 -4.1 -7.3 argininosuccinate lyase compare
DDA3937_RS20350 -4.1 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
DDA3937_RS04990 -4.0 -8.7 amino-acid N-acetyltransferase compare
DDA3937_RS12610 -4.0 -7.0 Grx4 family monothiol glutaredoxin compare
DDA3937_RS20155 -3.9 -13.9 dihydroxy-acid dehydratase compare
DDA3937_RS01660 -3.7 -13.5 FAD-dependent oxidoreductase compare
DDA3937_RS20345 -3.6 -5.9 acetylglutamate kinase compare
DDA3937_RS01940 -3.6 -8.8 ornithine carbamoyltransferase compare
DDA3937_RS01665 -3.6 -18.9 glutamate synthase large subunit compare
DDA3937_RS18310 -3.5 -13.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18405 -3.5 -12.2 threonine synthase compare
DDA3937_RS18305 -3.4 -11.7 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS01530 -3.4 -3.3 RNA polymerase factor sigma-54 compare
DDA3937_RS20890 -3.4 -12.2 argininosuccinate synthase compare
DDA3937_RS17425 -3.4 -12.7 diaminopimelate decarboxylase compare
DDA3937_RS20130 -3.3 -9.3 ketol-acid reductoisomerase compare
DDA3937_RS09710 -3.3 -9.5 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS18480 -3.2 -9.2 phosphoglycerate dehydrogenase compare
DDA3937_RS09735 -3.2 -14.6 histidinol dehydrogenase compare
DDA3937_RS10325 -3.2 -10.8 formyltetrahydrofolate deformylase compare
DDA3937_RS00950 -3.1 -13.2 cystathionine gamma-synthase compare
DDA3937_RS18275 -3.1 -13.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS02425 -3.1 -9.4 phosphoserine phosphatase compare
DDA3937_RS20355 -3.0 -10.8 acetylornithine deacetylase compare
DDA3937_RS06295 -3.0 -13.3 asparagine synthase B compare
DDA3937_RS02545 -3.0 -8.6 heavy metal translocating P-type ATPase compare
DDA3937_RS01220 -2.9 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS15965 -2.9 -13.3 aspartate 1-decarboxylase compare
DDA3937_RS18415 -2.9 -14.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS15960 -2.9 -9.7 pantoate--beta-alanine ligase compare
DDA3937_RS20150 -2.9 -10.9 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS09705 -2.8 -8.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DDA3937_RS00890 -2.8 -12.0 glycerol kinase GlpK compare
DDA3937_RS15955 -2.8 -11.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DDA3937_RS09720 -2.8 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS09730 -2.8 -10.1 histidinol-phosphate transaminase compare
DDA3937_RS12525 -2.8 -7.7 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS01215 -2.7 -8.3 phosphoribosylamine--glycine ligase compare
DDA3937_RS09725 -2.7 -8.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS20385 -2.6 -9.4 HTH-type transcriptional regulator MetR compare
DDA3937_RS15655 -2.5 -17.3 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS01815 -2.5 -6.6 cystathionine beta-lyase compare
DDA3937_RS18125 -2.5 -11.6 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS01600 -2.4 -10.6 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS19065 -2.4 -8.0 homoserine O-succinyltransferase compare
DDA3937_RS12770 -2.3 -6.5 Fe-S cluster assembly ATPase SufC compare
DDA3937_RS10540 -2.3 -2.6 HTH-type transcriptional regulator CysB compare
DDA3937_RS10340 -2.3 -12.7 two-component system response regulator RssB compare
DDA3937_RS15765 -2.3 -15.8 RNA polymerase sigma factor RpoE compare
DDA3937_RS00135 -2.3 -2.4 glutamate--ammonia ligase compare
DDA3937_RS18120 -2.2 -7.9 3-isopropylmalate dehydrogenase compare
DDA3937_RS09590 -2.2 -4.4 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS18115 -2.2 -9.4 2-isopropylmalate synthase compare
DDA3937_RS04490 -2.1 -3.6 cysteine synthase A compare
DDA3937_RS06025 -2.1 -8.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS00895 -2.1 -9.0 aquaporin compare
DDA3937_RS16935 -2.0 -3.4 phosphoadenylyl-sulfate reductase compare
DDA3937_RS01170 -2.0 -6.8 thiamine phosphate synthase compare
DDA3937_RS18410 -1.9 -8.2 homoserine kinase compare
DDA3937_RS05645 -1.9 -12.8 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS05150 -1.9 -5.9 sigma E protease regulator RseP compare
DDA3937_RS09715 -1.9 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS12915 -1.9 -16.6 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS01175 -1.8 -9.3 phosphomethylpyrimidine synthase ThiC compare
DDA3937_RS00655 -1.8 -3.9 aspartate 1-decarboxylase autocleavage activator PanM compare
DDA3937_RS18170 -1.8 -9.4 acetolactate synthase large subunit compare
DDA3937_RS09195 -1.8 -3.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS15335 -1.8 -6.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DDA3937_RS15110 -1.7 -3.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS16535 -1.7 -4.5 glutamate 5-kinase compare
DDA3937_RS16530 -1.7 -11.9 glutamate-5-semialdehyde dehydrogenase compare
DDA3937_RS20535 -1.7 -9.1 orotate phosphoribosyltransferase compare
DDA3937_RS04960 -1.7 -2.7 thymidylate synthase compare
DDA3937_RS12780 -1.6 -3.1 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS10485 -1.6 -5.8 anthranilate synthase component 1 compare
DDA3937_RS00125 -1.6 -2.2 nitrogen regulation protein NR(I) compare
DDA3937_RS04945 -1.6 -6.0 RNA pyrophosphohydrolase compare
DDA3937_RS12765 -1.6 -7.4 Fe-S cluster assembly protein SufD compare
DDA3937_RS10410 -1.5 -3.5 IS200/IS605 family transposase compare
DDA3937_RS05500 -1.5 -8.2 transcriptional regulator NrdR compare
DDA3937_RS13355 -1.5 -4.9 flagellar protein FliT compare
DDA3937_RS03300 -1.5 -1.8 site-specific tyrosine recombinase XerD compare
DDA3937_RS05105 -1.5 -4.2 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS06805 -1.5 -9.6 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS15720 -1.4 -3.5 pyridoxine 5'-phosphate synthase compare
DDA3937_RS12390 -1.4 -5.2 transcriptional regulator TyrR compare
DDA3937_RS09575 -1.4 -1.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS15910 -1.4 -1.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS03485 -1.4 -3.2 hypothetical protein compare
DDA3937_RS02725 -1.4 -2.5 FxsA family protein compare
DDA3937_RS14475 -1.4 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS16755 -1.4 -6.5 transcriptional repressor MprA compare
DDA3937_RS13040 -1.4 -6.3 NAD(P)/FAD-dependent oxidoreductase compare
DDA3937_RS00010 -1.4 -7.7 transcriptional regulator AsnC compare
DDA3937_RS01590 -1.4 -4.4 BolA family iron metabolism protein IbaG compare
DDA3937_RS13170 -1.4 -7.4 dihydroorotase compare
DDA3937_RS09670 -1.4 -2.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS12760 -1.3 -6.7 cysteine desulfurase SufS compare
DDA3937_RS19620 -1.3 -3.7 two-component system response regulator OmpR compare
DDA3937_RS12775 -1.3 -9.7 Fe-S cluster assembly protein SufB compare
DDA3937_RS01820 -1.3 -3.6 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS16285 -1.3 -3.3 winged helix-turn-helix transcriptional regulator compare
DDA3937_RS01165 -1.3 -6.7 HesA/MoeB/ThiF family protein compare
DDA3937_RS17150 -1.3 -3.0 gamma-glutamylcyclotransferase compare
DDA3937_RS16925 -1.3 -8.5 sulfate adenylyltransferase subunit CysD compare
DDA3937_RS06040 -1.3 -2.8 DnaA inactivator Hda compare
DDA3937_RS07410 -1.3 -3.3 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS15510 -1.3 -4.9 aminopeptidase PepB compare
DDA3937_RS10435 -1.3 -2.3 septation protein A compare
DDA3937_RS19615 -1.3 -2.7 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06685 -1.3 -4.2 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS10475 -1.3 -4.8 anthranilate phosphoribosyltransferase compare
DDA3937_RS09740 -1.2 -2.8 ATP phosphoribosyltransferase compare
DDA3937_RS18490 -1.2 -6.2 LysR family transcriptional regulator ArgP compare
DDA3937_RS16920 -1.2 -7.7 sulfate adenylyltransferase subunit CysN compare
DDA3937_RS13180 -1.2 -6.3 biofilm formation regulator BssS compare
DDA3937_RS16940 -1.2 -8.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS04895 -1.2 -2.6 oxidative damage protection protein compare
DDA3937_RS16050 -1.2 -2.6 ribonuclease HI compare
DDA3937_RS04480 -1.2 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS09550 -1.2 -2.7 cold shock-like protein CspD compare
DDA3937_RS17955 -1.2 -5.0 carboxylating nicotinate-nucleotide diphosphorylase compare
DDA3937_RS15150 -1.2 -6.3 polyphosphate kinase 1 compare
DDA3937_RS06070 -1.2 -5.1 outer membrane protein assembly factor BamC compare
DDA3937_RS18135 -1.1 -2.5 siderophore-interacting protein compare
DDA3937_RS17305 -1.1 -2.1 pyrroline-5-carboxylate reductase compare
DDA3937_RS01150 -1.1 -8.5 2-iminoacetate synthase ThiH compare
DDA3937_RS16795 -1.1 -1.3 YfiM family lipoprotein compare
DDA3937_RS06545 -1.1 -5.2 quinolinate synthase NadA compare
DDA3937_RS10465 -1.1 -3.6 tryptophan synthase subunit beta compare
DDA3937_RS16930 -1.1 -6.9 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS08400 -1.1 -1.6 H-NS histone family protein compare
DDA3937_RS19880 -1.1 -5.0 DNA helicase II compare
DDA3937_RS23235 -1.1 -2.8 hypothetical protein compare
DDA3937_RS16945 -1.1 -8.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS16095 -1.1 -2.5 16S ribosomal RNA compare
DDA3937_RS10470 -1.0 -3.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS06655 -1.0 -5.2 6-phosphogluconolactonase compare
DDA3937_RS01865 -1.0 -3.5 YhbP family protein compare
DDA3937_RS23315 -1.0 -3.0 protein MgtS compare
DDA3937_RS03250 -1.0 -2.0 glycine cleavage system protein GcvH compare
DDA3937_RS13060 -1.0 -1.8 penicillin-binding protein activator LpoB compare
DDA3937_RS11850 -1.0 -5.1 DUF1852 domain-containing protein compare
DDA3937_RS04125 -1.0 -4.3 acetyltransferase compare
DDA3937_RS18010 -1.0 -1.1 DUF721 domain-containing protein compare
DDA3937_RS14670 -1.0 -4.1 iron-enterobactin ABC transporter permease compare
DDA3937_RS15485 -1.0 -3.3 nucleoside-diphosphate kinase compare
DDA3937_RS15340 -1.0 -2.3 hydroxyethylthiazole kinase compare
DDA3937_RS23340 -1.0 -1.8 ilvB operon leader peptide IvbL compare
DDA3937_RS10675 -1.0 -1.1 ROK family transcriptional regulator compare
DDA3937_RS10460 -1.0 -3.8 tryptophan synthase subunit alpha compare
DDA3937_RS19510 -1.0 -2.1 peptidylprolyl isomerase A compare
DDA3937_RS01155 -1.0 -3.6 thiazole synthase compare
DDA3937_RS18270 -0.9 -3.5 Co2+/Mg2+ efflux protein ApaG compare
DDA3937_RS07175 -0.9 -1.7 LysR family transcriptional regulator compare
DDA3937_RS09585 -0.9 -1.3 thioredoxin-disulfide reductase compare
DDA3937_RS07115 -0.9 -6.7 GGDEF domain-containing protein compare
DDA3937_RS07760 -0.9 -2.1 iron ABC transporter permease compare
DDA3937_RS12855 -0.9 -4.4 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS15770 -0.9 -6.7 L-aspartate oxidase compare
DDA3937_RS08590 -0.9 -5.2 iron ABC transporter substrate-binding protein compare
DDA3937_RS00945 -0.9 -2.0 met regulon transcriptional regulator MetJ compare
DDA3937_RS06350 -0.9 -2.7 replication initiation negative regulator SeqA compare
DDA3937_RS18440 -0.9 -5.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
DDA3937_RS21795 -0.9 -1.5 CopG family transcriptional regulator compare
DDA3937_RS21340 -0.9 -1.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS23305 -0.9 -1.2 hypothetical protein compare
DDA3937_RS12755 -0.9 -5.0 cysteine desulfuration protein SufE compare
DDA3937_RS05160 -0.9 -1.2 molecular chaperone Skp compare
DDA3937_RS15450 -0.9 -2.3 outer membrane protein assembly factor BamB compare
DDA3937_RS01520 -0.9 -4.3 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS10200 -0.9 -2.7 YebY family protein compare
DDA3937_RS10405 -0.9 -1.6 cardiolipin synthase compare
DDA3937_RS01000 -0.9 -2.2 glutamate racemase compare
DDA3937_RS18560 -0.9 -2.6 glutathione synthase compare
DDA3937_RS02345 -0.9 -2.5 hypothetical protein compare
DDA3937_RS02890 -0.8 -3.3 FAD:protein FMN transferase ApbE compare
DDA3937_RS17710 -0.8 -4.1 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS05555 -0.8 -4.8 2-dehydropantoate 2-reductase compare
DDA3937_RS01855 -0.8 -2.0 aminoimidazole riboside kinase compare
DDA3937_RS00130 -0.8 -3.5 nitrogen regulation protein NR(II) compare
DDA3937_RS17015 -0.8 -7.6 GTP diphosphokinase compare
DDA3937_RS09170 -0.8 -2.7 hypothetical protein compare
DDA3937_RS15455 -0.8 -1.8 YfgM family protein compare
DDA3937_RS05865 -0.8 -2.0 2Fe-2S ferredoxin-like protein compare
DDA3937_RS17180 -0.8 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS02160 -0.8 -1.1 transketolase compare
DDA3937_RS16915 -0.8 -3.9 adenylyl-sulfate kinase compare
DDA3937_RS17110 -0.8 -4.7 inorganic triphosphatase compare
DDA3937_RS04550 -0.8 -2.5 multidrug/biocide efflux PACE transporter compare
DDA3937_RS14665 -0.8 -3.8 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS02815 -0.8 -1.8 transcriptional regulator ExuR compare
DDA3937_RS07825 -0.8 -2.6 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS08600 -0.8 -3.5 ABC transporter ATP-binding protein compare
DDA3937_RS08510 -0.8 -5.0 biotin synthase BioB compare
DDA3937_RS00155 -0.8 -4.6 fatty acid biosynthesis protein FabY compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms