Experiment setATCH128 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS18610 +5.8 27.6 RNA chaperone Hfq compare
DDA3937_RS13555 +4.7 28.8 flagellar motor stator protein MotA compare
DDA3937_RS13550 +4.5 22.6 flagellar motor protein MotB compare
DDA3937_RS15705 +4.5 23.8 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS13565 +4.5 20.9 flagellar transcriptional regulator FlhD compare
DDA3937_RS13560 +4.3 24.6 flagellar transcriptional regulator FlhC compare
DDA3937_RS13340 +4.1 18.0 flagellin FliC compare
DDA3937_RS11465 +4.0 26.0 EAL domain-containing protein compare
DDA3937_RS01695 +3.8 7.2 divisome-associated lipoprotein YraP compare
DDA3937_RS13435 +3.6 28.2 flagellar hook-associated protein FlgK compare
DDA3937_RS13430 +3.5 18.6 flagellar hook-associated protein FlgL compare
DDA3937_RS13300 +3.5 16.0 RNA polymerase sigma factor FliA compare
DDA3937_RS13405 +3.4 16.8 flagellar motor switch protein FliN compare
DDA3937_RS13495 +3.3 8.6 flagellar export chaperone FlgN compare
DDA3937_RS13400 +3.2 20.6 flagellar motor switch protein FliM compare
DDA3937_RS02685 +3.2 9.5 hypothetical protein compare
DDA3937_RS13480 +3.1 14.5 flagellar basal body rod protein FlgB compare
DDA3937_RS13365 +3.1 20.7 flagellar M-ring protein FliF compare
DDA3937_RS13380 +3.0 21.2 flagellum-specific ATP synthase FliI compare
DDA3937_RS13385 +3.0 16.0 flagella biosynthesis chaperone FliJ compare
DDA3937_RS06735 +2.9 11.3 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS13420 +2.9 11.2 flagellar biosynthesis protein FliQ compare
DDA3937_RS13370 +2.9 15.1 flagellar motor switch protein FliG compare
DDA3937_RS13460 +2.9 13.5 flagellar basal body rod protein FlgF compare
DDA3937_RS13320 +2.9 18.8 ATP-grasp domain-containing protein compare
DDA3937_RS20815 +2.8 20.7 two-component system sensor histidine kinase VfmI compare
DDA3937_RS13425 +2.8 15.6 flagellar type III secretion system protein FliR compare
DDA3937_RS13510 +2.8 19.6 flagellar type III secretion system protein FlhB compare
DDA3937_RS13505 +2.8 21.3 flagellar biosynthesis protein FlhA compare
DDA3937_RS13330 +2.8 21.9 methyltransferase regulatory domain-containing protein compare
DDA3937_RS13410 +2.8 13.8 flagellar biosynthetic protein FliO compare
DDA3937_RS20820 +2.7 16.8 two-component system response regulator VfmH compare
DDA3937_RS13375 +2.7 6.1 flagellar assembly protein FliH compare
DDA3937_RS13465 +2.7 20.8 flagellar hook protein FlgE compare
DDA3937_RS16110 +2.7 15.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS13445 +2.7 12.9 flagellar basal body P-ring protein FlgI compare
DDA3937_RS20835 +2.7 17.9 AraC family transcriptional regulator VfmE compare
DDA3937_RS13390 +2.7 13.6 flagellar hook-length control protein FliK compare
DDA3937_RS13415 +2.7 15.8 flagellar type III secretion system pore protein FliP compare
DDA3937_RS13470 +2.7 16.1 flagellar hook assembly protein FlgD compare
DDA3937_RS20830 +2.7 17.2 ABC transporter ATP-binding protein compare
DDA3937_RS13475 +2.6 13.1 flagellar basal body rod protein FlgC compare
DDA3937_RS14630 +2.6 9.3 tRNA-Arg compare
DDA3937_RS13450 +2.6 18.2 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13440 +2.6 14.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS13485 +2.5 12.4 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS13325 +2.5 12.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS13455 +2.5 12.9 flagellar basal-body rod protein FlgG compare
DDA3937_RS10840 +2.4 12.8 hypothetical protein compare
DDA3937_RS13360 +2.4 6.0 flagellar hook-basal body complex protein FliE compare
DDA3937_RS13395 +2.3 9.0 flagellar basal body-associated protein FliL compare
DDA3937_RS10845 +2.1 16.1 virulence factor SrfB compare
DDA3937_RS06740 +2.1 10.2 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS18675 +2.0 6.8 ABC transporter ATP-binding protein compare
DDA3937_RS00055 +2.0 17.9 ribose operon transcriptional repressor RbsR compare
DDA3937_RS11970 +2.0 8.4 RNA chaperone ProQ compare
DDA3937_RS14380 +2.0 4.5 acetate kinase compare
DDA3937_RS10850 +2.0 15.4 virulence factor compare
DDA3937_RS05320 +1.9 4.6 hypothetical protein compare
DDA3937_RS19660 +1.9 13.2 4-alpha-glucanotransferase compare
DDA3937_RS16540 +1.9 6.2 sigma factor-binding protein Crl compare
DDA3937_RS13315 +1.9 10.7 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS05415 +1.8 11.7 hypothetical protein compare
DDA3937_RS05420 +1.7 11.5 exonuclease subunit SbcD compare
DDA3937_RS07710 +1.7 7.3 diaminobutyrate--2-oxoglutarate transaminase compare
DDA3937_RS13545 +1.6 12.5 chemotaxis protein CheA compare
DDA3937_RS18670 +1.6 7.8 ABC transporter permease compare
DDA3937_RS07100 +1.6 3.0 D-amino-acid transaminase compare
DDA3937_RS22280 +1.5 2.5 GpE family phage tail protein compare
DDA3937_RS13490 +1.5 1.2 anti-sigma-28 factor FlgM compare
DDA3937_RS00050 +1.4 9.0 ribokinase compare
DDA3937_RS16550 +1.4 2.6 YfiR family protein compare
DDA3937_RS13540 +1.4 7.0 chemotaxis protein CheW compare
DDA3937_RS19875 +1.4 8.1 magnesium/cobalt transporter CorA compare
DDA3937_RS13520 +1.4 6.9 chemotaxis response regulator CheY compare
DDA3937_RS01920 +1.3 7.3 aspartate carbamoyltransferase regulatory subunit compare
DDA3937_RS13310 +1.3 7.0 FkbM family methyltransferase compare
DDA3937_RS22360 +1.3 10.6 deoxyribonuclease compare
DDA3937_RS00835 +1.3 2.6 2TM domain-containing protein compare
DDA3937_RS20560 +1.3 3.7 L-Ala-D/L-Glu epimerase compare
DDA3937_RS18685 +1.3 7.3 WbeA compare
DDA3937_RS16085 +1.2 2.5 23S ribosomal RNA compare
DDA3937_RS19665 +1.2 5.5 maltodextrin phosphorylase compare
DDA3937_RS04140 +1.2 1.8 hypothetical protein compare
DDA3937_RS02970 +1.2 2.3 malate dehydrogenase compare
DDA3937_RS20455 +1.2 3.6 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS01250 +1.2 1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS18665 +1.2 10.0 GDP-mannose 4,6-dehydratase compare
DDA3937_RS04555 +1.1 2.1 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS10380 +1.1 10.5 oligopeptide ABC transporter permease OppB compare
DDA3937_RS20290 +1.1 7.5 transcription/translation regulatory transformer protein RfaH compare
DDA3937_RS00920 +1.1 2.0 ATP-dependent protease subunit HslV compare
DDA3937_RS10390 +1.1 10.0 ABC transporter ATP-binding protein compare
DDA3937_RS10090 +1.1 5.8 zinc ABC transporter permease subunit ZnuB compare
DDA3937_RS23390 +1.1 2.0 hypothetical protein compare
DDA3937_RS08645 +1.1 4.8 ATP-dependent RNA helicase RhlE compare
DDA3937_RS10375 +1.1 10.1 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS16005 +1.1 3.2 YacC family pilotin-like protein compare
DDA3937_RS12595 +1.0 7.0 transcriptional regulator SlyA compare
DDA3937_RS21605 +1.0 3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS11975 +1.0 2.7 GAF domain-containing protein compare
DDA3937_RS06270 +1.0 1.5 tRNA-Met compare
DDA3937_RS10385 +1.0 8.7 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10060 +1.0 2.3 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS14950 +1.0 4.5 hypothetical protein compare
DDA3937_RS22450 +1.0 1.7 NAD-dependent dehydratase compare
DDA3937_RS07980 +0.9 3.2 ABC transporter permease subunit compare
DDA3937_RS00420 +0.9 4.1 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS04915 +0.9 3.0 DUF2884 domain-containing protein compare
DDA3937_RS13615 +0.9 2.2 phage holin family protein compare
DDA3937_RS19360 +0.9 5.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS20970 +0.9 5.2 mannitol operon repressor compare
DDA3937_RS14340 +0.9 4.0 transcriptional regulator LrhA compare
DDA3937_RS04405 +0.9 4.7 GNAT family N-acetyltransferase compare
DDA3937_RS10095 +0.9 5.0 zinc ABC transporter ATP-binding protein ZnuC compare
DDA3937_RS07715 +0.9 6.4 TonB-dependent receptor compare
DDA3937_RS14185 +0.9 2.0 glutamine amidotransferase compare
DDA3937_RS05210 +0.9 3.5 Rho-binding antiterminator compare
DDA3937_RS16195 +0.9 1.5 glutamate--cysteine ligase compare
DDA3937_RS00140 +0.9 4.8 ribosome-dependent GTPase TypA compare
DDA3937_RS21380 +0.9 6.5 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DDA3937_RS15710 +0.9 3.1 YfhL family 4Fe-4S dicluster ferredoxin compare
DDA3937_RS17665 +0.9 1.9 PAAR domain-containing protein compare
DDA3937_RS08965 +0.9 1.9 protease inhibitor I42 family protein compare
DDA3937_RS02765 +0.9 6.1 zinc uptake transcriptional repressor Zur compare
DDA3937_RS17645 +0.9 3.5 phage tail protein compare
DDA3937_RS19000 +0.9 1.8 EF-P beta-lysylation protein EpmB compare
DDA3937_RS18655 +0.9 6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS13155 +0.9 4.8 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DDA3937_RS05040 +0.9 4.8 cysteine desulfurase CsdA compare
DDA3937_RS02630 +0.9 3.0 TIGR04141 family sporadically distributed protein compare
DDA3937_RS21960 +0.9 3.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS20035 +0.9 5.5 lipid III flippase WzxE compare
DDA3937_RS11625 +0.8 3.8 type III secretion inner membrane ring lipoprotein SctJ compare
DDA3937_RS13530 +0.8 5.1 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS10775 +0.8 6.1 TetR/AcrR family transcriptional regulator compare
DDA3937_RS03190 +0.8 3.7 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
DDA3937_RS01225 +0.8 0.7 16S ribosomal RNA compare
DDA3937_RS15240 +0.8 3.7 cell division inhibitor SulA compare
DDA3937_RS18660 +0.8 7.1 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS00980 +0.8 6.2 HTH-type transcriptional repressor FabR compare
DDA3937_RS16685 +0.8 1.4 oxalurate catabolism protein HpxZ compare
DDA3937_RS21095 +0.8 1.3 DUF1471 domain-containing protein compare
DDA3937_RS06860 +0.8 3.0 hemin-degrading factor compare
DDA3937_RS10395 +0.8 7.4 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS22980 +0.8 1.9 IS3 family transposase compare
DDA3937_RS00325 +0.8 2.6 DUF1471 domain-containing protein compare
DDA3937_RS19135 +0.7 3.9 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
DDA3937_RS06445 +0.7 4.9 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS10885 +0.7 3.5 ABC transporter permease compare
DDA3937_RS13345 +0.7 2.2 flagellar filament capping protein FliD compare
DDA3937_RS13790 +0.7 2.2 helix-turn-helix transcriptional regulator compare
DDA3937_RS20645 +0.7 3.6 YicC family protein compare
DDA3937_RS04180 +0.7 2.1 ogr/Delta-like zinc finger family protein compare
DDA3937_RS13945 +0.7 4.6 hypothetical protein compare
DDA3937_RS19780 +0.7 1.2 gluconokinase compare
DDA3937_RS20885 +0.7 2.0 MarR family transcriptional regulator compare
DDA3937_RS03180 +0.7 3.3 ribosomal protein S18-alanine N-acetyltransferase compare
DDA3937_RS18555 +0.7 2.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
DDA3937_RS08030 +0.7 4.0 ABC transporter substrate-binding protein compare
DDA3937_RS06645 +0.7 1.9 molybdenum ABC transporter ATP-binding protein ModC compare
DDA3937_RS05035 +0.7 1.2 cysteine desulfurase sulfur acceptor subunit CsdE compare
DDA3937_RS03620 +0.7 2.5 hypothetical protein compare
DDA3937_RS10100 +0.7 3.3 zinc ABC transporter substrate-binding protein ZnuA compare
DDA3937_RS19400 +0.7 2.4 YheV family putative metal-binding protein compare
DDA3937_RS11615 +0.7 2.1 type III secretion system stator protein SctL compare
DDA3937_RS01675 +0.7 4.9 aerobic respiration two-component sensor histidine kinase ArcB compare
DDA3937_RS09120 +0.7 1.1 YejL family protein compare
DDA3937_RS20740 +0.7 3.5 type III PLP-dependent enzyme compare
DDA3937_RS23115 +0.7 2.2 hypothetical protein compare
DDA3937_RS14465 +0.7 1.5 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS13305 +0.7 2.8 hypothetical protein compare
DDA3937_RS21135 +0.7 2.0 DUF3861 domain-containing protein compare
DDA3937_RS05615 +0.7 1.0 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS20410 +0.7 1.0 protein-export chaperone SecB compare
DDA3937_RS06590 +0.6 1.9 copper-binding protein compare
DDA3937_RS22130 +0.6 1.5 recombinase compare
DDA3937_RS13350 +0.6 1.6 flagellar export chaperone FliS compare
DDA3937_RS18790 +0.6 1.8 IS110-like element ISEch3 family transposase compare
DDA3937_RS07730 +0.6 2.6 DHA2 family efflux MFS transporter permease subunit compare
DDA3937_RS16015 +0.6 4.0 adenosylmethionine decarboxylase compare
DDA3937_RS12170 +0.6 1.5 hypothetical protein compare
DDA3937_RS20475 +0.6 1.6 glycosyltransferase family 4 protein compare
DDA3937_RS18680 +0.6 2.4 GDP-L-fucose synthase compare
DDA3937_RS00985 +0.6 2.7 YijD family membrane protein compare
DDA3937_RS19605 +0.6 2.1 Hsp33 family molecular chaperone HslO compare
DDA3937_RS20735 +0.6 1.5 hypothetical protein compare
DDA3937_RS05030 +0.6 2.4 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
DDA3937_RS18605 +0.6 2.8 GTPase HflX compare
DDA3937_RS13245 +0.6 2.0 macrodomain Ter protein MatP compare
DDA3937_RS21385 +0.6 3.7 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
DDA3937_RS02965 +0.6 0.8 transcriptional regulator ArgR compare
DDA3937_RS18005 +0.6 2.0 secA regulator SecM compare
DDA3937_RS16970 +0.6 1.9 7-carboxy-7-deazaguanine synthase QueE compare
DDA3937_RS06440 +0.6 4.2 succinate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS13250 +0.6 4.6 Lon protease family protein compare
DDA3937_RS05560 +0.6 1.7 YajQ family cyclic di-GMP-binding protein compare
DDA3937_RS00745 +0.6 2.2 AEC family transporter compare
DDA3937_RS05840 +0.6 2.9 TraB/GumN family protein conserved
DDA3937_RS20470 +0.6 3.5 glycosyltransferase family 9 protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms