Experiment setATCH115 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS10940 -2.8 -7.8 tryptophan synthase subunit alpha compare
DZA65_RS15380 -2.7 -9.3 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS00800 -2.3 -5.7 O-antigen ligase family protein compare
DZA65_RS03265 -2.0 -2.2 protein YrbN compare
DZA65_RS06510 -2.0 -2.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS10955 -2.0 -2.6 anthranilate phosphoribosyltransferase compare
DZA65_RS10965 -1.9 -9.3 anthranilate synthase component 1 compare
DZA65_RS16710 -1.9 -3.5 iron-sulfur cluster assembly protein IscA compare
DZA65_RS10950 -1.9 -6.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS21790 -1.9 -3.5 sulfurtransferase TusA compare
DZA65_RS10945 -1.8 -7.5 tryptophan synthase subunit beta compare
DZA65_RS16715 -1.7 -1.8 Fe-S cluster assembly scaffold IscU compare
DZA65_RS01005 -1.7 -4.6 NAD(P)H-flavin reductase compare
DZA65_RS06900 -1.7 -2.5 colicin uptake protein TolR compare
DZA65_RS10030 -1.6 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS13085 -1.6 -3.6 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS05655 -1.5 -2.4 hypothetical protein compare
DZA65_RS11865 -1.5 -4.1 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS20550 -1.5 -4.1 sulfurtransferase complex subunit TusC compare
DZA65_RS16090 -1.5 -1.5 sulfurtransferase TusE compare
DZA65_RS09990 -1.5 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS03185 -1.4 -2.7 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS16705 -1.4 -3.8 co-chaperone HscB compare
DZA65_RS13120 -1.4 -3.7 ribonuclease T compare
DZA65_RS19495 -1.4 -2.1 two-component system response regulator ArcA compare
DZA65_RS20875 -1.4 -2.9 Fe-S biogenesis protein NfuA compare
DZA65_RS22195 -1.4 -7.6 ribosome-dependent GTPase TypA compare
DZA65_RS10555 -1.3 -2.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS02060 -1.3 -5.2 leucyl aminopeptidase compare
DZA65_RS10060 -1.3 -5.4 ATP phosphoribosyltransferase compare
DZA65_RS18160 -1.3 -2.5 glycerate kinase compare
DZA65_RS21080 -1.2 -6.4 DNA helicase II compare
DZA65_RS21760 -1.2 -3.3 cell division ATP-binding protein FtsE compare
DZA65_RS09240 -1.2 -1.9 biotin carboxyl carrier domain-containing protein compare
DZA65_RS11435 -1.2 -4.1 redox-regulated ATPase YchF compare
DZA65_RS15370 -1.2 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS03260 -1.2 -6.1 lipoprotein NlpI compare
DZA65_RS13750 -1.2 -9.1 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS03255 -1.2 -2.1 polyribonucleotide nucleotidyltransferase compare
DZA65_RS03465 -1.2 -3.4 FAD assembly factor SdhE compare
DZA65_RS10960 -1.2 -1.8 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS08925 -1.1 -3.9 molybdopterin-synthase adenylyltransferase MoeB compare
DZA65_RS05975 -1.1 -2.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS13755 -1.1 -5.5 glucan biosynthesis protein G compare
DZA65_RS16885 -1.1 -3.4 pyridoxine 5'-phosphate synthase compare
DZA65_RS11550 -1.1 -4.2 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS21090 -1.1 -1.9 tyrosine recombinase XerC compare
DZA65_RS10980 -1.1 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS16635 -1.1 -3.2 outer membrane protein assembly factor BamB compare
DZA65_RS06840 -1.1 -5.4 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS18920 -1.0 -4.5 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS22005 -1.0 -6.3 inorganic phosphate transporter PitA compare
DZA65_RS02300 -1.0 -2.6 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS22210 -1.0 -7.2 nitrogen regulation protein NR(I) compare
DZA65_RS00360 -1.0 -4.8 MarR family transcriptional regulator compare
DZA65_RS01350 -1.0 -2.4 DNA-binding transcriptional regulator Fis compare
DZA65_RS19160 -1.0 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS05165 -1.0 -2.0 hypothetical protein compare
DZA65_RS19350 -1.0 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS21755 -1.0 -4.8 cell division protein FtsX compare
DZA65_RS07055 -1.0 -5.1 iron-sulfur cluster carrier protein ApbC compare
DZA65_RS13025 -0.9 -1.6 stress response translation initiation inhibitor YciH compare
DZA65_RS01510 -0.9 -4.4 RNA polymerase factor sigma-54 compare
DZA65_RS17400 -0.9 -4.8 glutamate--cysteine ligase compare
DZA65_RS20355 -0.9 -3.6 Trk system potassium transporter TrkA compare
DZA65_RS06020 -0.9 -5.1 endopeptidase La compare
DZA65_RS11830 -0.9 -5.3 DNA-binding transcriptional regulator KdgR compare
DZA65_RS21115 -0.9 -5.2 class I adenylate cyclase compare
DZA65_RS21445 -0.9 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS02505 -0.9 -1.6 peptide chain release factor 3 compare
DZA65_RS01550 -0.9 -4.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS03670 -0.9 -4.0 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS17035 -0.9 -2.6 helix-turn-helix transcriptional regulator compare
DZA65_RS00420 -0.9 -5.2 FtsX-like permease family protein compare
DZA65_RS06830 -0.9 -5.0 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS06825 -0.8 -5.0 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS18285 -0.8 -3.8 gamma-glutamylcyclotransferase compare
DZA65_RS05310 -0.8 -4.5 thymidylate synthase compare
DZA65_RS04220 -0.8 -3.8 type II toxin-antitoxin system RatA family toxin compare
DZA65_RS10050 -0.8 -3.5 histidinol-phosphate transaminase compare
DZA65_RS00835 -0.8 -4.4 murein hydrolase activator EnvC compare
DZA65_RS16245 -0.8 -2.7 amino acid ABC transporter permease compare
DZA65_RS10915 -0.8 -3.3 septation protein A compare
DZA65_RS10025 -0.8 -2.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS20555 -0.8 -1.9 sulfurtransferase complex subunit TusD compare
DZA65_RS01960 -0.8 -2.3 2-iminobutanoate/2-iminopropanoate deaminase compare
DZA65_RS03130 -0.8 -4.2 malate dehydrogenase compare
DZA65_RS13125 -0.8 -2.7 Grx4 family monothiol glutaredoxin compare
DZA65_RS12505 -0.8 -4.2 carboxy terminal-processing peptidase compare
DZA65_RS05960 -0.8 -4.4 MFS transporter compare
DZA65_RS03495 -0.7 -4.1 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS06835 -0.7 -4.9 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS10055 -0.7 -2.5 histidinol dehydrogenase compare
DZA65_RS22360 -0.7 -5.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS12015 -0.7 -2.6 VENN motif pre-toxin domain-containing protein compare
DZA65_RS05985 -0.7 -2.7 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS22695 -0.7 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS09015 -0.7 -1.2 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS05965 -0.7 -2.3 protoheme IX farnesyltransferase compare
DZA65_RS04355 -0.7 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS09000 -0.7 -3.3 GTP 3',8-cyclase MoaA compare
DZA65_RS07460 -0.7 -3.1 SDR family oxidoreductase compare
DZA65_RS01050 -0.7 -5.1 Trk system potassium transporter TrkH compare
DZA65_RS06895 -0.7 -2.7 Tol-Pal system protein TolQ compare
DZA65_RS01430 -0.7 -3.3 ribonuclease G compare
DZA65_RS11690 -0.7 -2.4 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS20805 -0.7 -0.6 intracellular growth attenuator family protein compare
DZA65_RS21075 -0.7 -2.0 magnesium/cobalt transporter CorA compare
DZA65_RS12975 -0.7 -3.7 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS02465 -0.6 -1.9 cell division protein ZapA compare
DZA65_RS13140 -0.6 -3.9 HTH-type transcriptional repressor PurR compare
DZA65_RS04215 -0.6 -1.9 SsrA-binding protein SmpB compare
DZA65_RS20545 -0.6 -1.5 sulfurtransferase complex subunit TusB compare
DZA65_RS07030 -0.6 -3.6 6-phosphogluconolactonase compare
DZA65_RS18320 -0.6 -2.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS19630 -0.6 -3.8 glutathione synthase compare
DZA65_RS15515 -0.6 -3.9 phospholipid-binding lipoprotein MlaA compare
DZA65_RS07875 -0.6 -4.5 glutamate/aspartate:proton symporter GltP compare
DZA65_RS20905 -0.6 -1.6 glycerol-3-phosphate dehydrogenase compare
DZA65_RS13575 -0.6 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
DZA65_RS22735 -0.6 -1.3 hypothetical protein compare
DZA65_RS15280 -0.6 -3.0 acetate kinase compare
DZA65_RS22225 -0.6 -1.3 Der GTPase-activating protein YihI compare
DZA65_RS05855 -0.6 -3.5 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS06660 -0.6 -1.6 tRNA-Met compare
DZA65_RS08595 -0.6 -1.9 type VI secretion system-associated protein TagO compare
DZA65_RS21265 -0.6 -1.7 thioredoxin TrxA compare
DZA65_RS15100 -0.6 -2.4 hypothetical protein compare
DZA65_RS13195 -0.6 -2.5 hypothetical protein compare
DZA65_RS17115 -0.6 -1.9 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS13040 -0.6 -1.9 LapA family protein compare
DZA65_RS18200 -0.6 -1.1 hypothetical protein compare
DZA65_RS07090 -0.6 -1.2 protein-tyrosine-phosphatase compare
DZA65_RS01240 -0.6 -4.1 YjaG family protein compare
DZA65_RS05930 -0.6 -2.8 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS20860 -0.6 -2.9 RNA-binding transcriptional accessory protein compare
DZA65_RS04160 -0.6 -1.2 DUF2590 family protein compare
DZA65_RS13645 -0.5 -2.3 beta-ketoacyl-ACP synthase II compare
DZA65_RS21585 -0.5 -1.3 Pr2TM family membrane protein compare
DZA65_RS01545 -0.5 -2.7 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS10790 -0.5 -1.7 DUF1496 domain-containing protein compare
DZA65_RS22160 -0.5 -3.9 ATP-dependent DNA helicase RecG compare
DZA65_RS17145 -0.5 -2.3 polynucleotide adenylyltransferase PcnB compare
DZA65_RS05980 -0.5 -2.8 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS10505 -0.5 -2.0 dihydroneopterin triphosphate diphosphatase compare
DZA65_RS06475 -0.5 -2.7 DUF441 domain-containing protein compare
DZA65_RS18915 -0.5 -2.6 DeoR/GlpR transcriptional regulator compare
DZA65_RS20220 -0.5 -3.7 glucose-6-phosphate isomerase compare
DZA65_RS01760 -0.5 -4.0 cell division protein FtsP compare
DZA65_RS11530 -0.5 -1.8 hemagglutinin compare
DZA65_RS07000 -0.5 -2.2 molybdenum-dependent transcriptional regulator compare
DZA65_RS20005 -0.5 -0.9 helix-turn-helix transcriptional regulator compare
DZA65_RS00900 -0.5 -2.3 ATP-binding cassette domain-containing protein compare
DZA65_RS05375 -0.5 -2.3 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
DZA65_RS15565 -0.5 -1.3 hypothetical protein compare
DZA65_RS07555 -0.5 -1.6 DUF1738 domain-containing protein compare
DZA65_RS22985 -0.5 -1.0 hypothetical protein compare
DZA65_RS16945 -0.5 -3.6 ATP-dependent RNA helicase SrmB compare
DZA65_RS02255 -0.5 -2.4 D-threitol dehydrogenase compare
DZA65_RS01560 -0.5 -3.2 phospholipid-binding protein MlaC compare
DZA65_RS19645 -0.5 -4.1 class 1 fructose-bisphosphatase compare
DZA65_RS09460 -0.5 -1.4 YejL family protein compare
DZA65_RS00980 -0.5 -3.2 Sec-independent protein translocase subunit TatC compare
DZA65_RS12020 -0.5 -2.0 ribonuclease toxin immunity protein CdiI compare
DZA65_RS00515 -0.5 -2.6 LuxR family transcriptional regulator compare
DZA65_RS09570 -0.5 -1.7 1-phosphofructokinase compare
DZA65_RS18405 -0.5 -3.7 ribonuclease R compare
DZA65_RS21530 -0.5 -3.9 glycerol kinase GlpK compare
DZA65_RS10045 -0.5 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS06495 -0.5 -2.5 M15 family metallopeptidase compare
DZA65_RS13670 -0.5 -2.3 phosphate acyltransferase PlsX compare
DZA65_RS15520 -0.5 -2.8 tRNA-Arg compare
DZA65_RS03705 -0.5 -2.2 hypothetical protein compare
DZA65_RS11390 -0.5 -2.0 tetratricopeptide repeat-containing protein compare
DZA65_RS02600 -0.5 -2.5 aromatic ring-hydroxylating dioxygenase subunit alpha compare
DZA65_RS07825 -0.4 -1.9 hydrogenase 4 subunit H compare
DZA65_RS02850 -0.4 -3.4 aspartate ammonia-lyase compare
DZA65_RS15625 -0.4 -1.8 membrane protein YpdK compare
DZA65_RS01500 -0.4 -2.3 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS07675 -0.4 -2.1 helix-turn-helix transcriptional regulator compare
DZA65_RS00790 -0.4 -1.1 glycosyltransferase family 4 protein compare
DZA65_RS21275 -0.4 -2.9 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS19175 -0.4 -3.0 catabolite repressor/activator compare
DZA65_RS00270 -0.4 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
DZA65_RS19475 -0.4 -2.5 threonine synthase compare
DZA65_RS04590 -0.4 -1.7 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS15145 -0.4 -2.1 hypothetical protein compare
DZA65_RS22840 -0.4 -0.8 hypothetical protein compare
DZA65_RS16480 -0.4 -2.5 hypothetical protein compare
DZA65_RS13760 -0.4 -1.9 DUF2946 domain-containing protein compare
DZA65_RS19460 -0.4 -2.2 molybdopterin adenylyltransferase compare
DZA65_RS14990 -0.4 -3.0 transcriptional regulator LrhA compare
DZA65_RS17860 -0.4 -1.2 GntR family transcriptional regulator compare
DZA65_RS11020 -0.4 -2.7 HTH-type transcriptional regulator CysB compare
DZA65_RS06040 -0.4 -2.4 7-cyano-7-deazaguanine synthase QueC compare
DZA65_RS14295 -0.4 -0.5 DUF2594 family protein compare
DZA65_RS05500 -0.4 -1.7 molecular chaperone Skp compare
DZA65_RS11490 -0.4 -1.9 DspFAvrF family protein compare
DZA65_RS12955 -0.4 -2.0 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS05860 -0.4 -1.0 preprotein translocase subunit YajC compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms