Experiment setATCH114 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS00800 -3.0 -6.7 O-antigen ligase family protein compare
DZA65_RS16090 -2.8 -2.7 sulfurtransferase TusE compare
DZA65_RS10940 -2.8 -8.2 tryptophan synthase subunit alpha compare
DZA65_RS15380 -2.5 -8.3 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS18160 -2.2 -3.6 glycerate kinase compare
DZA65_RS21090 -2.2 -2.7 tyrosine recombinase XerC compare
DZA65_RS10965 -2.1 -9.6 anthranilate synthase component 1 compare
DZA65_RS16710 -2.1 -3.8 iron-sulfur cluster assembly protein IscA compare
DZA65_RS11865 -2.1 -6.0 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS10955 -2.1 -2.7 anthranilate phosphoribosyltransferase compare
DZA65_RS16715 -2.0 -2.0 Fe-S cluster assembly scaffold IscU compare
DZA65_RS10950 -1.9 -6.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS10945 -1.9 -7.5 tryptophan synthase subunit beta compare
DZA65_RS13085 -1.9 -4.1 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS06510 -1.8 -2.9 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS01005 -1.8 -5.5 NAD(P)H-flavin reductase compare
DZA65_RS20550 -1.8 -4.6 sulfurtransferase complex subunit TusC compare
DZA65_RS21790 -1.7 -3.2 sulfurtransferase TusA compare
DZA65_RS02505 -1.7 -4.0 peptide chain release factor 3 compare
DZA65_RS20555 -1.7 -3.7 sulfurtransferase complex subunit TusD compare
DZA65_RS20355 -1.7 -6.0 Trk system potassium transporter TrkA compare
DZA65_RS16885 -1.5 -5.1 pyridoxine 5'-phosphate synthase compare
DZA65_RS16705 -1.5 -3.9 co-chaperone HscB compare
DZA65_RS06900 -1.5 -2.3 colicin uptake protein TolR compare
DZA65_RS10960 -1.4 -2.8 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS03465 -1.3 -3.7 FAD assembly factor SdhE compare
DZA65_RS10050 -1.3 -4.4 histidinol-phosphate transaminase compare
DZA65_RS13125 -1.3 -4.5 Grx4 family monothiol glutaredoxin compare
DZA65_RS05965 -1.3 -4.6 protoheme IX farnesyltransferase compare
DZA65_RS09990 -1.3 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS13750 -1.2 -9.4 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS15370 -1.2 -5.4 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS05985 -1.2 -4.2 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS16045 -1.2 -5.7 polyphosphate kinase 1 compare
DZA65_RS22195 -1.2 -7.1 ribosome-dependent GTPase TypA compare
DZA65_RS05975 -1.1 -2.2 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS21755 -1.1 -5.6 cell division protein FtsX compare
DZA65_RS02060 -1.1 -4.3 leucyl aminopeptidase compare
DZA65_RS22145 -1.1 -2.6 DNA-directed RNA polymerase subunit omega compare
DZA65_RS09015 -1.1 -1.8 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS10025 -1.1 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS10060 -1.1 -3.6 ATP phosphoribosyltransferase compare
DZA65_RS05310 -1.0 -6.8 thymidylate synthase compare
DZA65_RS13755 -1.0 -6.5 glucan biosynthesis protein G compare
DZA65_RS10055 -1.0 -3.5 histidinol dehydrogenase compare
DZA65_RS06020 -1.0 -5.6 endopeptidase La compare
DZA65_RS22360 -1.0 -8.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS05655 -1.0 -3.0 hypothetical protein compare
DZA65_RS00810 -1.0 -2.8 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS20545 -1.0 -2.4 sulfurtransferase complex subunit TusB compare
DZA65_RS22005 -1.0 -6.2 inorganic phosphate transporter PitA compare
DZA65_RS16690 -1.0 -2.4 Fe-S cluster assembly protein IscX compare
DZA65_RS18655 -0.9 -2.0 DUF1471 domain-containing protein compare
DZA65_RS17400 -0.9 -4.7 glutamate--cysteine ligase compare
DZA65_RS14415 -0.9 -2.1 IS4 family transposase compare
DZA65_RS00360 -0.9 -4.8 MarR family transcriptional regulator compare
DZA65_RS03255 -0.9 -2.1 polyribonucleotide nucleotidyltransferase compare
DZA65_RS22210 -0.9 -6.4 nitrogen regulation protein NR(I) compare
DZA65_RS21080 -0.9 -5.4 DNA helicase II compare
DZA65_RS11830 -0.9 -4.4 DNA-binding transcriptional regulator KdgR compare
DZA65_RS01510 -0.9 -4.9 RNA polymerase factor sigma-54 compare
DZA65_RS09810 -0.9 -1.7 DUF2593 family protein compare
DZA65_RS17860 -0.9 -1.4 GntR family transcriptional regulator compare
DZA65_RS04220 -0.9 -5.0 type II toxin-antitoxin system RatA family toxin compare
DZA65_RS21115 -0.9 -5.7 class I adenylate cyclase compare
DZA65_RS20875 -0.9 -2.2 Fe-S biogenesis protein NfuA compare
DZA65_RS21445 -0.9 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS21110 -0.9 -3.2 iron donor protein CyaY compare
DZA65_RS12505 -0.9 -5.1 carboxy terminal-processing peptidase compare
DZA65_RS09910 -0.8 -3.6 thioredoxin-disulfide reductase compare
DZA65_RS22695 -0.8 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS05855 -0.8 -4.3 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS01350 -0.8 -1.7 DNA-binding transcriptional regulator Fis compare
DZA65_RS01550 -0.8 -3.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS10915 -0.8 -4.3 septation protein A compare
DZA65_RS19685 -0.8 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS06835 -0.8 -5.7 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS03670 -0.8 -3.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS06895 -0.8 -3.6 Tol-Pal system protein TolQ compare
DZA65_RS03130 -0.8 -4.4 malate dehydrogenase compare
DZA65_RS19655 -0.8 -2.1 adenylosuccinate synthase compare
DZA65_RS21760 -0.8 -3.2 cell division ATP-binding protein FtsE compare
DZA65_RS03260 -0.8 -3.9 lipoprotein NlpI compare
DZA65_RS05980 -0.8 -4.5 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS16635 -0.8 -1.8 outer membrane protein assembly factor BamB compare
DZA65_RS08135 -0.8 -2.5 RraA family protein compare
DZA65_RS00835 -0.8 -4.6 murein hydrolase activator EnvC compare
DZA65_RS13645 -0.8 -2.7 beta-ketoacyl-ACP synthase II compare
DZA65_RS14395 -0.8 -1.8 EexN family lipoprotein compare
DZA65_RS09000 -0.7 -3.6 GTP 3',8-cyclase MoaA compare
DZA65_RS12020 -0.7 -2.9 ribonuclease toxin immunity protein CdiI compare
DZA65_RS01370 -0.7 -1.4 YhdT family protein compare
DZA65_RS00420 -0.7 -4.5 FtsX-like permease family protein compare
DZA65_RS11550 -0.7 -3.0 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS22845 -0.7 -2.3 hypothetical protein compare
DZA65_RS17330 -0.7 -3.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS12995 -0.7 -3.3 exoribonuclease II compare
DZA65_RS18285 -0.7 -4.2 gamma-glutamylcyclotransferase compare
DZA65_RS02425 -0.7 -1.9 ABC transporter permease compare
DZA65_RS19160 -0.7 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS19350 -0.7 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS22635 -0.7 -2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS10095 -0.7 -4.0 fumarylacetoacetate hydrolase family protein compare
DZA65_RS16265 -0.7 -2.1 hypothetical protein compare
DZA65_RS02300 -0.7 -1.1 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS11595 -0.7 -1.5 cell division topological specificity factor MinE compare
DZA65_RS06840 -0.7 -3.0 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS18785 -0.7 -1.6 hypothetical protein compare
DZA65_RS11435 -0.7 -1.9 redox-regulated ATPase YchF compare
DZA65_RS01545 -0.7 -3.2 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS04215 -0.6 -1.8 SsrA-binding protein SmpB compare
DZA65_RS21475 -0.6 -1.4 met regulon transcriptional regulator MetJ compare
DZA65_RS11925 -0.6 -1.1 DNA-damage-inducible protein J compare
DZA65_RS06660 -0.6 -1.9 tRNA-Met compare
DZA65_RS00970 -0.6 -1.5 twin-arginine translocase subunit TatA compare
DZA65_RS20560 -0.6 -2.8 transcriptional regulator compare
DZA65_RS21075 -0.6 -1.6 magnesium/cobalt transporter CorA compare
DZA65_RS07460 -0.6 -2.9 SDR family oxidoreductase compare
DZA65_RS03705 -0.6 -2.9 hypothetical protein compare
DZA65_RS14515 -0.6 -1.6 transposase compare
DZA65_RS10045 -0.6 -2.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS01430 -0.6 -2.9 ribonuclease G compare
DZA65_RS12985 -0.6 -1.8 hypothetical protein compare
DZA65_RS09395 -0.6 -1.6 plasmid stabilization protein compare
DZA65_RS13475 -0.6 -3.3 EAL domain-containing protein compare
DZA65_RS18455 -0.6 -2.6 XTP/dITP diphosphatase compare
DZA65_RS03185 -0.6 -1.6 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS05885 -0.6 -3.0 transcriptional regulator NrdR compare
DZA65_RS01275 -0.6 -1.6 23S ribosomal RNA compare
DZA65_RS01560 -0.6 -4.2 phospholipid-binding protein MlaC compare
DZA65_RS06825 -0.6 -3.3 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS03825 -0.6 -2.5 DinI family protein compare
DZA65_RS20940 -0.6 -1.8 cold-shock protein compare
DZA65_RS10030 -0.6 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS22935 -0.6 -2.7 hypothetical protein compare
DZA65_RS22365 -0.6 -3.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
DZA65_RS19300 -0.6 -1.9 Hcp family type VI secretion system effector compare
DZA65_RS06830 -0.6 -3.3 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS14710 -0.6 -1.4 LD-carboxypeptidase compare
DZA65_RS13140 -0.6 -3.7 HTH-type transcriptional repressor PurR compare
DZA65_RS06335 -0.6 -1.5 DUF1778 domain-containing protein compare
DZA65_RS19630 -0.6 -3.5 glutathione synthase compare
DZA65_RS10485 -0.6 -2.4 membrane protein compare
DZA65_RS13485 -0.6 -2.0 endopeptidase compare
DZA65_RS15285 -0.5 -2.8 phosphate acetyltransferase compare
DZA65_RS05500 -0.5 -2.3 molecular chaperone Skp compare
DZA65_RS14335 -0.5 -2.2 transcriptional regulator compare
DZA65_RS02850 -0.5 -4.1 aspartate ammonia-lyase compare
DZA65_RS21700 -0.5 -2.6 LysR family transcriptional regulator compare
DZA65_RS22160 -0.5 -3.8 ATP-dependent DNA helicase RecG compare
DZA65_RS01050 -0.5 -4.1 Trk system potassium transporter TrkH compare
DZA65_RS12795 -0.5 -2.1 lactate utilization protein C compare
DZA65_RS09570 -0.5 -1.6 1-phosphofructokinase compare
DZA65_RS19405 -0.5 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS20220 -0.5 -3.7 glucose-6-phosphate isomerase compare
DZA65_RS12725 -0.5 -1.8 ABC transporter ATP-binding protein compare
DZA65_RS20070 -0.5 -2.6 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS07895 -0.5 -1.9 ABC transporter ATP-binding protein compare
DZA65_RS07875 -0.5 -3.6 glutamate/aspartate:proton symporter GltP compare
DZA65_RS02180 -0.5 -1.5 IS5 family transposase compare
DZA65_RS15280 -0.5 -2.6 acetate kinase compare
DZA65_RS19240 -0.5 -1.2 hypothetical protein compare
DZA65_RS18215 -0.5 -1.4 hypothetical protein compare
DZA65_RS19645 -0.5 -4.1 class 1 fructose-bisphosphatase compare
DZA65_RS13425 -0.5 -2.6 nicotinate phosphoribosyltransferase compare
DZA65_RS14885 -0.5 -1.3 HyaD/HybD family hydrogenase maturation endopeptidase compare
DZA65_RS16875 -0.5 -2.7 YfhL family 4Fe-4S dicluster ferredoxin compare
DZA65_RS15445 -0.5 -1.8 YfcL family protein compare
DZA65_RS06150 -0.5 -2.0 adenine phosphoribosyltransferase compare
DZA65_RS05960 -0.5 -2.7 MFS transporter compare
DZA65_RS20805 -0.5 -0.4 intracellular growth attenuator family protein compare
DZA65_RS07800 -0.5 -1.9 DUF4160 domain-containing protein compare
DZA65_RS22855 -0.5 -2.3 hypothetical protein compare
DZA65_RS14820 -0.5 -2.0 formate dehydrogenase cytochrome b556 subunit compare
DZA65_RS01685 -0.5 -2.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
DZA65_RS22975 -0.5 -1.0 hypothetical protein compare
DZA65_RS17595 -0.4 -1.1 hypothetical protein compare
DZA65_RS13670 -0.4 -2.1 phosphate acyltransferase PlsX compare
DZA65_RS17035 -0.4 -1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS18000 -0.4 -3.6 MetQ/NlpA family lipoprotein compare
DZA65_RS15565 -0.4 -1.3 hypothetical protein compare
DZA65_RS01240 -0.4 -3.2 YjaG family protein compare
DZA65_RS13135 -0.4 -1.2 YnhF family membrane protein compare
DZA65_RS11625 -0.4 -2.0 RidA family protein compare
DZA65_RS02805 -0.4 -2.4 helix-turn-helix transcriptional regulator compare
DZA65_RS16910 -0.4 -2.6 elongation factor 4 compare
DZA65_RS14295 -0.4 -0.8 DUF2594 family protein compare
DZA65_RS09455 -0.4 -1.9 DUF3413 domain-containing protein compare
DZA65_RS12770 -0.4 -1.5 acid resistance repetitive basic protein Asr compare
DZA65_RS18320 -0.4 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS20835 -0.4 -2.4 two-component system sensor histidine kinase EnvZ compare
DZA65_RS12580 -0.4 -1.0 tail protein X compare
DZA65_RS22680 -0.4 -3.4 TetR/AcrR family transcriptional regulator compare
DZA65_RS12955 -0.4 -2.2 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS01675 -0.4 -2.3 YraN family protein compare
DZA65_RS13120 -0.4 -1.7 ribonuclease T compare
DZA65_RS02930 -0.4 -2.1 DUF883 domain-containing protein compare
DZA65_RS15220 -0.4 -2.4 DUF3164 family protein compare
DZA65_RS08595 -0.4 -1.1 type VI secretion system-associated protein TagO compare
DZA65_RS12590 -0.4 -2.0 phage baseplate assembly protein V compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms