Experiment setATCH113 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS20775 -3.4 -2.3 DUF2531 family protein compare
DZA65_RS15565 -3.3 -3.1 hypothetical protein compare
DZA65_RS16090 -3.0 -2.1 sulfurtransferase TusE compare
DZA65_RS00800 -2.9 -4.5 O-antigen ligase family protein compare
DZA65_RS18160 -2.7 -2.6 glycerate kinase compare
DZA65_RS15380 -2.7 -4.1 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS10940 -2.4 -3.9 tryptophan synthase subunit alpha compare
DZA65_RS16710 -2.2 -2.8 iron-sulfur cluster assembly protein IscA compare
DZA65_RS16715 -2.2 -1.6 Fe-S cluster assembly scaffold IscU compare
DZA65_RS19085 -2.1 -2.4 secA regulator SecM compare
DZA65_RS19350 -2.0 -4.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS05975 -2.0 -2.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS03185 -2.0 -2.2 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS21090 -1.9 -1.8 tyrosine recombinase XerC compare
DZA65_RS10950 -1.9 -3.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS20355 -1.8 -5.4 Trk system potassium transporter TrkA compare
DZA65_RS05165 -1.8 -1.7 hypothetical protein compare
DZA65_RS11865 -1.8 -3.3 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS01005 -1.8 -3.5 NAD(P)H-flavin reductase compare
DZA65_RS06510 -1.7 -1.9 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS19685 -1.7 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS10945 -1.6 -3.7 tryptophan synthase subunit beta compare
DZA65_RS10050 -1.6 -3.5 histidinol-phosphate transaminase compare
DZA65_RS10965 -1.6 -5.0 anthranilate synthase component 1 compare
DZA65_RS03255 -1.5 -2.0 polyribonucleotide nucleotidyltransferase compare
DZA65_RS10055 -1.5 -3.8 histidinol dehydrogenase compare
DZA65_RS18215 -1.5 -2.4 hypothetical protein compare
DZA65_RS02945 -1.5 -2.1 transcriptional regulator ExuR compare
DZA65_RS20875 -1.5 -1.7 Fe-S biogenesis protein NfuA compare
DZA65_RS13755 -1.4 -5.9 glucan biosynthesis protein G compare
DZA65_RS22005 -1.4 -6.8 inorganic phosphate transporter PitA compare
DZA65_RS11595 -1.4 -2.3 cell division topological specificity factor MinE compare
DZA65_RS22195 -1.4 -5.3 ribosome-dependent GTPase TypA compare
DZA65_RS19655 -1.4 -2.5 adenylosuccinate synthase compare
DZA65_RS02060 -1.4 -3.6 leucyl aminopeptidase compare
DZA65_RS02505 -1.3 -2.4 peptide chain release factor 3 compare
DZA65_RS09015 -1.3 -1.4 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS06900 -1.3 -1.3 colicin uptake protein TolR compare
DZA65_RS13085 -1.3 -2.5 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS10955 -1.3 -1.5 anthranilate phosphoribosyltransferase compare
DZA65_RS12795 -1.3 -2.9 lactate utilization protein C compare
DZA65_RS03670 -1.3 -3.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS21615 -1.3 -2.5 envelope stress sensor histidine kinase CpxA compare
DZA65_RS13750 -1.3 -7.7 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS09990 -1.3 -1.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS05860 -1.3 -2.2 preprotein translocase subunit YajC compare
DZA65_RS18975 -1.2 -1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS11530 -1.2 -2.1 hemagglutinin compare
DZA65_RS10790 -1.2 -2.4 DUF1496 domain-containing protein compare
DZA65_RS05965 -1.2 -3.0 protoheme IX farnesyltransferase compare
DZA65_RS09375 -1.2 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS18400 -1.2 -2.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS20550 -1.2 -2.2 sulfurtransferase complex subunit TusC compare
DZA65_RS05500 -1.2 -2.4 molecular chaperone Skp compare
DZA65_RS21080 -1.2 -5.1 DNA helicase II compare
DZA65_RS02245 -1.2 -1.6 transketolase compare
DZA65_RS12975 -1.2 -4.4 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS15370 -1.2 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS21790 -1.2 -1.9 sulfurtransferase TusA compare
DZA65_RS16885 -1.2 -3.1 pyridoxine 5'-phosphate synthase compare
DZA65_RS11900 -1.2 -1.1 hypothetical protein compare
DZA65_RS21800 -1.2 -1.7 DcrB family lipoprotein compare
DZA65_RS11550 -1.2 -3.1 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS00360 -1.1 -4.1 MarR family transcriptional regulator compare
DZA65_RS06835 -1.1 -6.4 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS07565 -1.1 -2.6 CcdB family protein compare
DZA65_RS17195 -1.1 -2.8 hypothetical protein compare
DZA65_RS16690 -1.1 -1.4 Fe-S cluster assembly protein IscX compare
DZA65_RS01350 -1.1 -1.8 DNA-binding transcriptional regulator Fis compare
DZA65_RS19495 -1.1 -1.4 two-component system response regulator ArcA compare
DZA65_RS21755 -1.1 -4.0 cell division protein FtsX compare
DZA65_RS10410 -1.1 -2.6 GPW/gp25 family protein compare
DZA65_RS20545 -1.1 -1.8 sulfurtransferase complex subunit TusB compare
DZA65_RS06840 -1.1 -3.5 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS21760 -1.0 -2.7 cell division ATP-binding protein FtsE compare
DZA65_RS17880 -1.0 -1.8 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS10025 -1.0 -3.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS07435 -1.0 -2.5 As(III)-sensing metalloregulatory transcriptional repressor ArsR compare
DZA65_RS09000 -1.0 -3.2 GTP 3',8-cyclase MoaA compare
DZA65_RS05980 -1.0 -4.1 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS08535 -1.0 -1.5 amidohydrolase compare
DZA65_RS22770 -1.0 -1.9 hypothetical protein compare
DZA65_RS14395 -1.0 -1.3 EexN family lipoprotein compare
DZA65_RS16460 -1.0 -1.3 hypothetical protein compare
DZA65_RS14735 -1.0 -3.1 NAD(P)H-dependent oxidoreductase compare
DZA65_RS18920 -1.0 -3.0 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS05960 -1.0 -4.2 MFS transporter compare
DZA65_RS00845 -1.0 -1.3 protein-export chaperone SecB compare
DZA65_RS22640 -1.0 -3.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS10285 -1.0 -2.0 LysR family transcriptional regulator compare
DZA65_RS22025 -1.0 -2.1 DUF1471 domain-containing protein compare
DZA65_RS15280 -1.0 -3.3 acetate kinase compare
DZA65_RS10960 -1.0 -1.7 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS01205 -1.0 -1.9 HesA/MoeB/ThiF family protein compare
DZA65_RS03260 -1.0 -3.5 lipoprotein NlpI compare
DZA65_RS01430 -1.0 -3.0 ribonuclease G compare
DZA65_RS00790 -1.0 -1.3 glycosyltransferase family 4 protein compare
DZA65_RS01510 -0.9 -3.3 RNA polymerase factor sigma-54 compare
DZA65_RS10915 -0.9 -3.4 septation protein A compare
DZA65_RS16705 -0.9 -2.0 co-chaperone HscB compare
DZA65_RS11435 -0.9 -2.4 redox-regulated ATPase YchF compare
DZA65_RS03775 -0.9 -1.7 MarR family transcriptional regulator compare
DZA65_RS06360 -0.9 -1.9 ABC transporter ATP-binding protein compare
DZA65_RS22210 -0.9 -5.1 nitrogen regulation protein NR(I) compare
DZA65_RS01320 -0.9 -1.2 ASCH domain-containing protein compare
DZA65_RS10305 -0.9 -1.8 ATP-binding protein compare
DZA65_RS14415 -0.9 -1.4 IS4 family transposase compare
DZA65_RS15100 -0.9 -2.3 hypothetical protein compare
DZA65_RS02255 -0.9 -2.9 D-threitol dehydrogenase compare
DZA65_RS10060 -0.9 -2.8 ATP phosphoribosyltransferase compare
DZA65_RS07390 -0.9 -2.2 ATP-dependent helicase compare
DZA65_RS14855 -0.9 -3.2 hydrogenase expression/formation protein HypE compare
DZA65_RS19670 -0.9 -2.3 FtsH protease activity modulator HflK compare
DZA65_RS07055 -0.9 -3.1 iron-sulfur cluster carrier protein ApbC compare
DZA65_RS01550 -0.9 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS14245 -0.9 -2.2 acyl carrier protein compare
DZA65_RS21115 -0.9 -5.0 class I adenylate cyclase compare
DZA65_RS06660 -0.9 -1.3 tRNA-Met compare
DZA65_RS13645 -0.9 -2.6 beta-ketoacyl-ACP synthase II compare
DZA65_RS02300 -0.9 -1.4 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS19630 -0.9 -3.7 glutathione synthase compare
DZA65_RS01570 -0.8 -2.9 BolA family iron metabolism protein IbaG compare
DZA65_RS05310 -0.8 -4.4 thymidylate synthase compare
DZA65_RS11830 -0.8 -3.4 DNA-binding transcriptional regulator KdgR compare
DZA65_RS07800 -0.8 -2.3 DUF4160 domain-containing protein compare
DZA65_RS06105 -0.8 -2.4 50S ribosomal protein L36 compare
DZA65_RS13380 -0.8 -1.5 MOSC domain-containing protein compare
DZA65_RS12995 -0.8 -2.6 exoribonuclease II compare
DZA65_RS00835 -0.8 -3.6 murein hydrolase activator EnvC compare
DZA65_RS01050 -0.8 -4.7 Trk system potassium transporter TrkH compare
DZA65_RS09095 -0.8 -1.7 hypothetical protein compare
DZA65_RS05790 -0.8 -1.7 recombination-associated protein RdgC compare
DZA65_RS17145 -0.8 -2.7 polynucleotide adenylyltransferase PcnB compare
DZA65_RS03465 -0.8 -2.3 FAD assembly factor SdhE compare
DZA65_RS12020 -0.8 -2.2 ribonuclease toxin immunity protein CdiI compare
DZA65_RS19335 -0.8 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
DZA65_RS21715 -0.8 -1.4 L(+)-tartrate dehydratase subunit beta compare
DZA65_RS20660 -0.8 -1.0 aminodeoxychorismate synthase component II compare
DZA65_RS09270 -0.8 -1.8 hypothetical protein compare
DZA65_RS17985 -0.8 -1.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS22225 -0.8 -1.2 Der GTPase-activating protein YihI compare
DZA65_RS17400 -0.8 -2.9 glutamate--cysteine ligase compare
DZA65_RS01240 -0.8 -4.3 YjaG family protein compare
DZA65_RS17835 -0.8 -1.9 oxalurate catabolism protein HpxX compare
DZA65_RS07810 -0.8 -2.5 hydrogenase maturation peptidase HycI compare
DZA65_RS15520 -0.8 -3.7 tRNA-Arg compare
DZA65_RS17330 -0.8 -2.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS07120 -0.8 -1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS09035 -0.7 -1.5 ABC transporter ATP-binding protein compare
DZA65_RS11565 -0.7 -1.7 disulfide bond formation protein DsbB compare
DZA65_RS10485 -0.7 -2.2 membrane protein compare
DZA65_RS14345 -0.7 -1.5 AlpA family transcriptional regulator compare
DZA65_RS08140 -0.7 -1.4 type II toxin-antitoxin system HicB family antitoxin compare
DZA65_RS06895 -0.7 -2.2 Tol-Pal system protein TolQ compare
DZA65_RS00675 -0.7 -1.3 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS08270 -0.7 -1.2 biopolymer transporter ExbD compare
DZA65_RS08925 -0.7 -1.9 molybdopterin-synthase adenylyltransferase MoeB compare
DZA65_RS04420 -0.7 -4.3 fumarate hydratase compare
DZA65_RS15515 -0.7 -3.6 phospholipid-binding lipoprotein MlaA compare
DZA65_RS12275 -0.7 -1.4 hypothetical protein compare
DZA65_RS10045 -0.7 -2.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS06825 -0.7 -3.4 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS10980 -0.7 -1.7 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS15630 -0.7 -2.0 prepilin peptidase compare
DZA65_RS22975 -0.7 -1.0 hypothetical protein compare
DZA65_RS16945 -0.7 -4.0 ATP-dependent RNA helicase SrmB compare
DZA65_RS03340 -0.7 -1.8 adenine phosphoribosyltransferase compare
DZA65_RS16120 -0.7 -2.8 DNA helicase IV compare
DZA65_RS07440 -0.7 -2.0 IS5 family transposase compare
DZA65_RS06020 -0.7 -2.9 endopeptidase La compare
DZA65_RS16140 -0.7 -2.9 cell division inhibitor SulA compare
DZA65_RS22355 -0.7 -3.8 FMN-binding protein MioC compare
DZA65_RS12755 -0.7 -1.5 hypothetical protein compare
DZA65_RS17860 -0.7 -1.3 GntR family transcriptional regulator compare
DZA65_RS16910 -0.7 -2.9 elongation factor 4 compare
DZA65_RS20645 -0.7 -2.2 OsmC family protein compare
DZA65_RS02150 -0.7 -1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS15755 -0.7 -1.9 PTS transporter subunit EIIB compare
DZA65_RS20835 -0.7 -3.3 two-component system sensor histidine kinase EnvZ compare
DZA65_RS06830 -0.7 -3.0 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS15445 -0.7 -1.5 YfcL family protein compare
DZA65_RS09240 -0.6 -0.5 biotin carboxyl carrier domain-containing protein compare
DZA65_RS00420 -0.6 -3.2 FtsX-like permease family protein compare
DZA65_RS20555 -0.6 -1.3 sulfurtransferase complex subunit TusD compare
DZA65_RS22360 -0.6 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS01500 -0.6 -2.4 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS04220 -0.6 -2.8 type II toxin-antitoxin system RatA family toxin compare
DZA65_RS18285 -0.6 -2.5 gamma-glutamylcyclotransferase compare
DZA65_RS07665 -0.6 -1.6 AlpA family transcriptional regulator compare
DZA65_RS16635 -0.6 -1.3 outer membrane protein assembly factor BamB compare
DZA65_RS10030 -0.6 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS18560 -0.6 -3.7 Fic family protein compare
DZA65_RS08070 -0.6 -2.7 diaminobutyrate--2-oxoglutarate transaminase compare
DZA65_RS02455 -0.6 -2.9 Xaa-Pro aminopeptidase compare
DZA65_RS06495 -0.6 -2.2 M15 family metallopeptidase compare
DZA65_RS11825 -0.6 -1.8 hypothetical protein compare
DZA65_RS12175 -0.6 -1.6 HPr kinase compare
DZA65_RS13040 -0.6 -1.6 LapA family protein compare
DZA65_RS00070 -0.6 -2.5 GntR family transcriptional regulator compare
DZA65_RS21860 -0.6 -2.1 cellulose synthase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms