Experiment setATCH112 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS09670 -2.3 -7.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS10485 -2.3 -6.5 anthranilate synthase component 1 compare
DDA3937_RS09575 -2.0 -2.4 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS04960 -1.9 -3.6 thymidylate synthase compare
DDA3937_RS10480 -1.9 -2.3 glutamine amidotransferase compare
DDA3937_RS10475 -1.8 -5.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS10465 -1.8 -4.3 tryptophan synthase subunit beta compare
DDA3937_RS01250 -1.8 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS01000 -1.8 -3.6 glutamate racemase compare
DDA3937_RS05725 -1.7 -5.6 Hha toxicity modulator TomB compare
DDA3937_RS13920 -1.7 -2.9 CcdB family protein compare
DDA3937_RS00640 -1.7 -3.2 cell division ATP-binding protein FtsE compare
DDA3937_RS10540 -1.7 -2.1 HTH-type transcriptional regulator CysB compare
DDA3937_RS18235 -1.7 -10.7 RNA polymerase-associated protein RapA compare
DDA3937_RS19615 -1.6 -4.6 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS02410 -1.6 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS13340 -1.6 -6.4 flagellin FliC compare
DDA3937_RS13145 -1.5 -3.6 23S rRNA accumulation protein YceD compare
DDA3937_RS00645 -1.5 -6.2 cell division protein FtsX compare
DDA3937_RS10460 -1.5 -4.9 tryptophan synthase subunit alpha compare
DDA3937_RS14475 -1.5 -4.6 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS13555 -1.5 -9.6 flagellar motor stator protein MotA compare
DDA3937_RS01915 -1.5 -2.6 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS15720 -1.5 -4.1 pyridoxine 5'-phosphate synthase compare
DDA3937_RS00135 -1.5 -2.3 glutamate--ammonia ligase compare
DDA3937_RS00900 -1.4 -5.2 cell division protein ZapB compare
DDA3937_RS19620 -1.4 -3.4 two-component system response regulator OmpR compare
DDA3937_RS06040 -1.4 -2.7 DnaA inactivator Hda compare
DDA3937_RS08400 -1.3 -2.4 H-NS histone family protein compare
DDA3937_RS13180 -1.3 -6.1 biofilm formation regulator BssS compare
DDA3937_RS00140 -1.3 -5.5 ribosome-dependent GTPase TypA compare
DDA3937_RS13550 -1.2 -7.4 flagellar motor protein MotB compare
DDA3937_RS18080 -1.2 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS12900 -1.2 -11.0 porin compare
DDA3937_RS19880 -1.2 -6.6 DNA helicase II compare
DDA3937_RS17545 -1.2 -3.8 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS12440 -1.2 -4.9 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS13435 -1.2 -10.0 flagellar hook-associated protein FlgK compare
DDA3937_RS09585 -1.2 -2.1 thioredoxin-disulfide reductase compare
DDA3937_RS21990 -1.2 -2.9 hypothetical protein compare
DDA3937_RS12450 -1.1 -2.9 peptide ABC transporter permease SapC compare
DDA3937_RS17150 -1.1 -3.0 gamma-glutamylcyclotransferase compare
DDA3937_RS06350 -1.1 -4.8 replication initiation negative regulator SeqA compare
DDA3937_RS13135 -1.1 -5.0 phosphate acyltransferase PlsX compare
DDA3937_RS20475 -1.1 -2.0 glycosyltransferase family 4 protein compare
DDA3937_RS10985 -1.1 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS15420 -1.1 -5.0 IMP dehydrogenase compare
DDA3937_RS01505 -1.1 -2.9 nucleoside diphosphate kinase regulator compare
DDA3937_RS12460 -1.1 -4.7 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS18585 -1.1 -2.0 adenylosuccinate synthase compare
DDA3937_RS13330 -1.1 -9.1 methyltransferase regulatory domain-containing protein compare
DDA3937_RS13430 -1.1 -6.1 flagellar hook-associated protein FlgL compare
DDA3937_RS06735 -1.0 -5.7 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS18010 -1.0 -1.6 DUF721 domain-containing protein compare
DDA3937_RS16110 -1.0 -7.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS12620 -1.0 -3.4 HTH-type transcriptional repressor PurR compare
DDA3937_RS20465 -1.0 -4.8 O-antigen ligase family protein compare
DDA3937_RS16755 -1.0 -6.0 transcriptional repressor MprA compare
DDA3937_RS22035 -1.0 -2.1 immunity protein RhsIC compare
DDA3937_RS13930 -1.0 -2.9 transposase compare
DDA3937_RS22125 -1.0 -2.5 conjugal transfer protein TrbI compare
DDA3937_RS02345 -1.0 -2.8 hypothetical protein compare
DDA3937_RS13325 -1.0 -6.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS14465 -1.0 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS13375 -1.0 -2.9 flagellar assembly protein FliH compare
DDA3937_RS22355 -0.9 -2.5 mobilization protein mobC compare
DDA3937_RS13320 -0.9 -7.2 ATP-grasp domain-containing protein compare
DDA3937_RS10675 -0.9 -1.3 ROK family transcriptional regulator compare
DDA3937_RS07750 -0.9 -3.1 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS05895 -0.9 -3.8 transcriptional regulator RcsB compare
DDA3937_RS13495 -0.9 -2.8 flagellar export chaperone FlgN compare
DDA3937_RS12445 -0.9 -1.5 peptide ABC transporter permease SapB compare
DDA3937_RS14470 -0.9 -2.0 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS05635 -0.9 -4.5 trigger factor compare
DDA3937_RS17485 -0.9 -1.7 envelope stress response protein PspG compare
DDA3937_RS19780 -0.9 -1.2 gluconokinase compare
DDA3937_RS06765 -0.9 -1.9 DUF616 domain-containing protein compare
DDA3937_RS13315 -0.9 -5.7 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS19590 -0.9 -1.7 intracellular growth attenuator family protein compare
DDA3937_RS22175 -0.9 -2.0 IS3 family transposase compare
DDA3937_RS05035 -0.9 -2.5 cysteine desulfurase sulfur acceptor subunit CsdE compare
DDA3937_RS10470 -0.9 -2.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS14595 -0.8 -4.3 phosphohistidine phosphatase SixA compare
DDA3937_RS00125 -0.8 -1.3 nitrogen regulation protein NR(I) compare
DDA3937_RS02915 -0.8 -3.6 TetR/AcrR family transcriptional regulator compare
DDA3937_RS23190 -0.8 -1.8 hypothetical protein compare
DDA3937_RS18685 -0.8 -5.8 WbeA compare
DDA3937_RS02665 -0.8 -2.0 type II toxin-antitoxin system toxin CcdB compare
DDA3937_RS07575 -0.8 -3.2 hypothetical protein compare
DDA3937_RS01550 -0.8 -3.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS04430 -0.8 -3.2 Hcp family type VI secretion system effector compare
DDA3937_RS00925 -0.8 -3.5 cell division protein FtsN compare
DDA3937_RS10200 -0.8 -2.1 YebY family protein compare
DDA3937_RS05790 -0.8 -3.2 recombination protein RecR compare
DDA3937_RS05470 -0.8 -1.9 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS07795 -0.8 -1.3 GNAT family N-acetyltransferase compare
DDA3937_RS18690 -0.8 -3.5 glycosyltransferase compare
DDA3937_RS15030 -0.8 -3.1 ATP-binding cassette domain-containing protein compare
DDA3937_RS03285 -0.7 -1.8 protein YgfX compare
DDA3937_RS01530 -0.7 -2.5 RNA polymerase factor sigma-54 compare
DDA3937_RS14340 -0.7 -3.2 transcriptional regulator LrhA compare
DDA3937_RS11875 -0.7 -2.5 AAA family ATPase compare
DDA3937_RS23505 -0.7 -1.8 hypothetical protein compare
DDA3937_RS13060 -0.7 -2.1 penicillin-binding protein activator LpoB compare
DDA3937_RS02150 -0.7 -1.1 AAA family ATPase compare
DDA3937_RS22235 -0.7 -2.7 immunity 8 family protein compare
DDA3937_RS18665 -0.7 -6.3 GDP-mannose 4,6-dehydratase compare
DDA3937_RS11870 -0.7 -3.0 SIR2 family protein compare
DDA3937_RS00775 -0.7 -1.8 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS14385 -0.7 -4.3 phosphate acetyltransferase compare
DDA3937_RS03405 -0.7 -2.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS02585 -0.7 -3.5 oligosaccharide flippase family protein compare
DDA3937_RS03420 -0.7 -2.5 sugar transferase compare
DDA3937_RS16750 -0.7 -3.1 L-valine transporter subunit YgaH compare
DDA3937_RS13480 -0.7 -3.8 flagellar basal body rod protein FlgB compare
DDA3937_RS23460 -0.7 -1.8 hypothetical protein compare
DDA3937_RS14675 -0.7 -1.6 ABC transporter ATP-binding protein compare
DDA3937_RS10315 -0.7 -2.4 trimeric intracellular cation channel family protein compare
DDA3937_RS21605 -0.7 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS20455 -0.7 -1.7 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS18680 -0.7 -2.2 GDP-L-fucose synthase compare
DDA3937_RS09345 -0.7 -1.2 IS200/IS605 family transposase compare
DDA3937_RS13390 -0.7 -3.3 flagellar hook-length control protein FliK compare
DDA3937_RS13485 -0.7 -3.7 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS01525 -0.6 -4.1 ribosome hibernation promoting factor compare
DDA3937_RS08395 -0.6 -2.0 DUF3800 domain-containing protein compare
DDA3937_RS11245 -0.6 -2.6 RidA family protein compare
DDA3937_RS08815 -0.6 -1.6 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS02685 -0.6 -1.7 hypothetical protein compare
DDA3937_RS14945 -0.6 -2.0 hypothetical protein compare
DDA3937_RS07490 -0.6 -3.5 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS10390 -0.6 -5.8 ABC transporter ATP-binding protein compare
DDA3937_RS13565 -0.6 -3.9 flagellar transcriptional regulator FlhD compare
DDA3937_RS09590 -0.6 -2.5 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS16065 -0.6 -2.1 murein transglycosylase D compare
DDA3937_RS06100 -0.6 -1.3 M15 family metallopeptidase compare
DDA3937_RS23335 -0.6 -2.1 leu operon leader peptide compare
DDA3937_RS13300 -0.6 -3.9 RNA polymerase sigma factor FliA compare
DDA3937_RS02325 -0.6 -1.3 HTH-type transcriptional activator RhaS compare
DDA3937_RS07175 -0.6 -1.2 LysR family transcriptional regulator compare
DDA3937_RS09580 -0.6 -1.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS21310 -0.6 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS13450 -0.6 -4.7 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13405 -0.6 -4.2 flagellar motor switch protein FliN compare
DDA3937_RS10385 -0.6 -5.5 oligopeptide ABC transporter permease OppC compare
DDA3937_RS00490 -0.6 -2.3 hypothetical protein compare
DDA3937_RS06760 -0.6 -2.2 EpsG family protein compare
DDA3937_RS11315 -0.6 -3.2 fructosamine kinase family protein compare
DDA3937_RS04125 -0.6 -2.7 acetyltransferase compare
DDA3937_RS19910 -0.6 -1.6 iron donor protein CyaY compare
DDA3937_RS20420 -0.6 -3.1 murein hydrolase activator EnvC compare
DDA3937_RS18670 -0.6 -2.3 ABC transporter permease compare
DDA3937_RS12575 -0.6 -1.5 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS02400 -0.6 -2.5 YecA family protein compare
DDA3937_RS22540 -0.6 -2.8 type VI secretion system PAAR protein compare
DDA3937_RS08585 -0.6 -1.4 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS23495 -0.6 -1.6 hypothetical protein compare
DDA3937_RS10375 -0.6 -5.7 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS19400 -0.6 -2.7 YheV family putative metal-binding protein compare
DDA3937_RS19930 -0.6 -1.5 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS20975 -0.6 -3.3 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS02395 -0.6 -0.8 Xaa-Pro aminopeptidase compare
DDA3937_RS05150 -0.6 -2.0 sigma E protease regulator RseP compare
DDA3937_RS06055 -0.6 -2.6 thioredoxin-dependent thiol peroxidase compare
DDA3937_RS04495 -0.6 -2.7 sulfate transporter CysZ compare
DDA3937_RS11465 -0.6 -4.4 EAL domain-containing protein compare
DDA3937_RS03480 -0.6 -4.8 acetate--CoA ligase compare
DDA3937_RS13415 -0.6 -3.4 flagellar type III secretion system pore protein FliP compare
DDA3937_RS13345 -0.6 -3.1 flagellar filament capping protein FliD compare
DDA3937_RS19510 -0.6 -1.8 peptidylprolyl isomerase A compare
DDA3937_RS10370 -0.6 -1.6 YchE family NAAT transporter compare
DDA3937_RS06535 -0.6 -1.3 tRNA-Lys compare
DDA3937_RS09550 -0.5 -2.2 cold shock-like protein CspD compare
DDA3937_RS13310 -0.5 -2.8 FkbM family methyltransferase compare
DDA3937_RS13420 -0.5 -3.1 flagellar biosynthesis protein FliQ compare
DDA3937_RS15705 -0.5 -3.3 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS14630 -0.5 -1.8 tRNA-Arg compare
DDA3937_RS20735 -0.5 -1.6 hypothetical protein compare
DDA3937_RS05820 -0.5 -2.5 hypothetical protein compare
DDA3937_RS13365 -0.5 -4.4 flagellar M-ring protein FliF compare
DDA3937_RS20235 -0.5 -2.9 Trk system potassium transporter TrkH compare
DDA3937_RS10380 -0.5 -4.9 oligopeptide ABC transporter permease OppB compare
DDA3937_RS06655 -0.5 -2.6 6-phosphogluconolactonase compare
DDA3937_RS17825 -0.5 -2.7 TIGR00730 family Rossman fold protein compare
DDA3937_RS10395 -0.5 -5.0 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS07985 -0.5 -1.1 hypothetical protein compare
DDA3937_RS21595 -0.5 -1.8 F0F1 ATP synthase subunit I compare
DDA3937_RS13370 -0.5 -3.9 flagellar motor switch protein FliG compare
DDA3937_RS15745 -0.5 -2.3 elongation factor 4 compare
DDA3937_RS09770 -0.5 -1.2 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS13530 -0.5 -3.6 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS20470 -0.5 -3.8 glycosyltransferase family 9 protein compare
DDA3937_RS19640 -0.5 -2.3 hypothetical protein compare
DDA3937_RS23165 -0.5 -2.8 hypothetical protein compare
DDA3937_RS04160 -0.5 -1.6 DUF5405 family protein compare
DDA3937_RS16430 -0.5 -1.9 acyl carrier protein compare
DDA3937_RS13410 -0.5 -2.8 flagellar biosynthetic protein FliO compare
DDA3937_RS18980 -0.5 -2.0 fumarate reductase subunit FrdD compare
DDA3937_RS05640 -0.5 -3.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS07410 -0.5 -1.9 4Fe-4S dicluster domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms