Experiment setATCH111 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS03300 -2.4 -3.0 site-specific tyrosine recombinase XerD compare
DDA3937_RS19615 -2.3 -4.7 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS04960 -2.0 -3.8 thymidylate synthase compare
DDA3937_RS10480 -2.0 -2.3 glutamine amidotransferase compare
DDA3937_RS05725 -2.0 -6.4 Hha toxicity modulator TomB compare
DDA3937_RS00135 -1.9 -2.6 glutamate--ammonia ligase compare
DDA3937_RS10485 -1.9 -7.0 anthranilate synthase component 1 compare
DDA3937_RS10475 -1.8 -6.2 anthranilate phosphoribosyltransferase compare
DDA3937_RS09670 -1.8 -6.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS00640 -1.7 -3.2 cell division ATP-binding protein FtsE compare
DDA3937_RS15720 -1.7 -4.8 pyridoxine 5'-phosphate synthase compare
DDA3937_RS18080 -1.7 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS10465 -1.7 -5.1 tryptophan synthase subunit beta compare
DDA3937_RS14475 -1.6 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS19620 -1.6 -4.3 two-component system response regulator OmpR compare
DDA3937_RS12450 -1.5 -3.9 peptide ABC transporter permease SapC compare
DDA3937_RS18680 -1.5 -5.0 GDP-L-fucose synthase compare
DDA3937_RS22355 -1.4 -2.3 mobilization protein mobC compare
DDA3937_RS18235 -1.4 -10.4 RNA polymerase-associated protein RapA compare
DDA3937_RS13555 -1.4 -9.0 flagellar motor stator protein MotA compare
DDA3937_RS10470 -1.4 -4.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS06100 -1.4 -2.5 M15 family metallopeptidase compare
DDA3937_RS13430 -1.3 -7.1 flagellar hook-associated protein FlgL compare
DDA3937_RS13340 -1.3 -6.2 flagellin FliC compare
DDA3937_RS02915 -1.3 -5.3 TetR/AcrR family transcriptional regulator compare
DDA3937_RS13180 -1.3 -6.4 biofilm formation regulator BssS compare
DDA3937_RS13930 -1.2 -2.4 transposase compare
DDA3937_RS06350 -1.2 -4.1 replication initiation negative regulator SeqA compare
DDA3937_RS12900 -1.2 -11.1 porin compare
DDA3937_RS10460 -1.2 -4.9 tryptophan synthase subunit alpha compare
DDA3937_RS01505 -1.2 -3.4 nucleoside diphosphate kinase regulator compare
DDA3937_RS13435 -1.2 -10.0 flagellar hook-associated protein FlgK compare
DDA3937_RS23305 -1.2 -2.1 hypothetical protein compare
DDA3937_RS00645 -1.1 -5.3 cell division protein FtsX compare
DDA3937_RS12440 -1.1 -4.9 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS13550 -1.1 -7.9 flagellar motor protein MotB compare
DDA3937_RS06735 -1.1 -5.9 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS01000 -1.1 -3.1 glutamate racemase compare
DDA3937_RS19140 -1.1 -5.4 Trk system potassium transporter TrkA compare
DDA3937_RS10580 -1.1 -2.8 transcription modulator YdgT compare
DDA3937_RS20475 -1.1 -1.7 glycosyltransferase family 4 protein compare
DDA3937_RS00900 -1.1 -4.9 cell division protein ZapB compare
DDA3937_RS10675 -1.1 -1.2 ROK family transcriptional regulator compare
DDA3937_RS12445 -1.1 -1.8 peptide ABC transporter permease SapB compare
DDA3937_RS16755 -1.1 -6.0 transcriptional repressor MprA compare
DDA3937_RS19605 -1.1 -3.1 Hsp33 family molecular chaperone HslO compare
DDA3937_RS13330 -1.1 -9.4 methyltransferase regulatory domain-containing protein compare
DDA3937_RS18585 -1.1 -2.4 adenylosuccinate synthase compare
DDA3937_RS12620 -1.0 -4.2 HTH-type transcriptional repressor PurR compare
DDA3937_RS20235 -1.0 -5.3 Trk system potassium transporter TrkH compare
DDA3937_RS16110 -1.0 -7.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS13920 -1.0 -1.8 CcdB family protein compare
DDA3937_RS09585 -1.0 -2.1 thioredoxin-disulfide reductase compare
DDA3937_RS14465 -1.0 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS03285 -1.0 -2.5 protein YgfX compare
DDA3937_RS09575 -1.0 -1.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS20455 -1.0 -2.8 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS17150 -0.9 -2.4 gamma-glutamylcyclotransferase compare
DDA3937_RS06040 -0.9 -2.1 DnaA inactivator Hda compare
DDA3937_RS13220 -0.9 -3.8 glucan biosynthesis protein G compare
DDA3937_RS19880 -0.9 -5.4 DNA helicase II compare
DDA3937_RS00125 -0.9 -1.6 nitrogen regulation protein NR(I) compare
DDA3937_RS15420 -0.9 -4.7 IMP dehydrogenase compare
DDA3937_RS12460 -0.9 -4.8 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS16050 -0.9 -2.0 ribonuclease HI compare
DDA3937_RS13350 -0.9 -3.3 flagellar export chaperone FliS compare
DDA3937_RS13135 -0.9 -4.0 phosphate acyltransferase PlsX compare
DDA3937_RS09580 -0.9 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS01820 -0.9 -2.6 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS13320 -0.9 -6.6 ATP-grasp domain-containing protein compare
DDA3937_RS07410 -0.9 -3.3 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS06145 -0.9 -2.1 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS13325 -0.9 -5.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS11210 -0.9 -3.2 septum site-determining protein MinD compare
DDA3937_RS18670 -0.9 -2.7 ABC transporter permease compare
DDA3937_RS19930 -0.8 -3.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS10295 -0.8 -4.2 NAD(P)H nitroreductase compare
DDA3937_RS20420 -0.8 -4.6 murein hydrolase activator EnvC compare
DDA3937_RS14595 -0.8 -4.4 phosphohistidine phosphatase SixA compare
DDA3937_RS23190 -0.8 -1.6 hypothetical protein compare
DDA3937_RS20975 -0.8 -4.5 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS18685 -0.8 -5.3 WbeA compare
DDA3937_RS00140 -0.8 -3.7 ribosome-dependent GTPase TypA compare
DDA3937_RS10985 -0.8 -2.6 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS14630 -0.8 -2.5 tRNA-Arg compare
DDA3937_RS11125 -0.8 -1.9 hypothetical protein compare
DDA3937_RS09550 -0.8 -3.2 cold shock-like protein CspD compare
DDA3937_RS05470 -0.8 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS21595 -0.8 -3.0 F0F1 ATP synthase subunit I compare
DDA3937_RS06985 -0.7 -2.4 type I addiction module toxin, SymE family compare
DDA3937_RS11970 -0.7 -3.4 RNA chaperone ProQ compare
DDA3937_RS13485 -0.7 -4.9 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS12010 -0.7 -1.7 hypothetical protein compare
DDA3937_RS07750 -0.7 -2.4 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS13495 -0.7 -2.0 flagellar export chaperone FlgN compare
DDA3937_RS20470 -0.7 -4.8 glycosyltransferase family 9 protein compare
DDA3937_RS11875 -0.7 -2.4 AAA family ATPase compare
DDA3937_RS22035 -0.7 -1.8 immunity protein RhsIC compare
DDA3937_RS13415 -0.7 -4.1 flagellar type III secretion system pore protein FliP compare
DDA3937_RS12500 -0.7 -1.8 carbon starvation protein A compare
DDA3937_RS13300 -0.7 -4.4 RNA polymerase sigma factor FliA compare
DDA3937_RS20465 -0.7 -3.3 O-antigen ligase family protein compare
DDA3937_RS01550 -0.7 -3.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS21070 -0.7 -2.1 DNA-3-methyladenine glycosylase I compare
DDA3937_RS13315 -0.7 -4.5 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS04430 -0.7 -2.2 Hcp family type VI secretion system effector compare
DDA3937_RS09345 -0.7 -1.3 IS200/IS605 family transposase compare
DDA3937_RS03150 -0.7 -4.0 purine-nucleoside phosphorylase compare
DDA3937_RS18665 -0.7 -5.8 GDP-mannose 4,6-dehydratase compare
DDA3937_RS22560 -0.7 -1.1 membrane protein insertion efficiency factor YidD compare
DDA3937_RS11685 -0.6 -1.5 HrpP protein compare
DDA3937_RS06740 -0.6 -3.9 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS13375 -0.6 -1.9 flagellar assembly protein FliH compare
DDA3937_RS05105 -0.6 -2.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS02280 -0.6 -1.4 chorismate mutase compare
DDA3937_RS13480 -0.6 -2.9 flagellar basal body rod protein FlgB compare
DDA3937_RS11655 -0.6 -2.0 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS16795 -0.6 -1.4 YfiM family lipoprotein compare
DDA3937_RS05640 -0.6 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS14385 -0.6 -3.3 phosphate acetyltransferase compare
DDA3937_RS02160 -0.6 -1.2 transketolase compare
DDA3937_RS21260 -0.6 -2.2 DUF2623 domain-containing protein compare
DDA3937_RS05695 -0.6 -2.8 P-II family nitrogen regulator compare
DDA3937_RS14750 -0.6 -2.7 prepilin peptidase compare
DDA3937_RS13365 -0.6 -5.3 flagellar M-ring protein FliF compare
DDA3937_RS16935 -0.6 -1.8 phosphoadenylyl-sulfate reductase compare
DDA3937_RS21310 -0.6 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS13390 -0.6 -3.7 flagellar hook-length control protein FliK compare
DDA3937_RS10205 -0.6 -3.2 hypothetical protein compare
DDA3937_RS10725 -0.6 -1.7 acyltransferase family protein compare
DDA3937_RS16750 -0.6 -2.3 L-valine transporter subunit YgaH compare
DDA3937_RS18145 -0.6 -1.7 hypothetical protein compare
DDA3937_RS19435 -0.6 -2.5 phosphoribulokinase compare
DDA3937_RS12920 -0.6 -1.4 MBL fold metallo-hydrolase compare
DDA3937_RS19000 -0.6 -1.3 EF-P beta-lysylation protein EpmB compare
DDA3937_RS10375 -0.6 -5.8 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS01525 -0.6 -4.2 ribosome hibernation promoting factor compare
DDA3937_RS13425 -0.6 -4.4 flagellar type III secretion system protein FliR compare
DDA3937_RS10390 -0.6 -5.2 ABC transporter ATP-binding protein compare
DDA3937_RS18845 -0.6 -3.3 homocitrate synthase compare
DDA3937_RS07490 -0.6 -3.3 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS13410 -0.6 -3.5 flagellar biosynthetic protein FliO compare
DDA3937_RS15910 -0.6 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS13345 -0.6 -3.0 flagellar filament capping protein FliD compare
DDA3937_RS03420 -0.6 -1.8 sugar transferase compare
DDA3937_RS12800 -0.6 -1.9 AI-2E family transporter YdiK compare
DDA3937_RS13245 -0.6 -1.3 macrodomain Ter protein MatP compare
DDA3937_RS10385 -0.6 -5.2 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10395 -0.5 -5.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS08480 -0.5 -3.4 NAD-dependent malic enzyme compare
DDA3937_RS11205 -0.5 -2.6 septum site-determining protein MinC compare
DDA3937_RS13455 -0.5 -3.8 flagellar basal-body rod protein FlgG compare
DDA3937_RS04425 -0.5 -2.8 cysteine synthase CysM compare
DDA3937_RS06685 -0.5 -2.4 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS10435 -0.5 -1.3 septation protein A compare
DDA3937_RS10540 -0.5 -1.3 HTH-type transcriptional regulator CysB compare
DDA3937_RS15945 -0.5 -2.9 polynucleotide adenylyltransferase PcnB compare
DDA3937_RS01520 -0.5 -2.8 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS18090 -0.5 -2.1 L-alanine exporter AlaE compare
DDA3937_RS09370 -0.5 -1.3 GTP cyclohydrolase I FolE compare
DDA3937_RS13310 -0.5 -3.3 FkbM family methyltransferase compare
DDA3937_RS10380 -0.5 -4.8 oligopeptide ABC transporter permease OppB compare
DDA3937_RS02685 -0.5 -1.1 hypothetical protein compare
DDA3937_RS10440 -0.5 -1.7 UPF0259 family protein compare
DDA3937_RS11465 -0.5 -4.3 EAL domain-containing protein compare
DDA3937_RS05655 -0.5 -2.6 DNA-binding protein HU-beta compare
DDA3937_RS13560 -0.5 -3.5 flagellar transcriptional regulator FlhC compare
DDA3937_RS23485 -0.5 -0.6 hypothetical protein compare
DDA3937_RS13450 -0.5 -4.0 flagellar basal body L-ring protein FlgH compare
DDA3937_RS14945 -0.5 -1.7 hypothetical protein compare
DDA3937_RS13440 -0.5 -3.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS12095 -0.5 -1.2 recombinase family protein compare
DDA3937_RS12390 -0.5 -2.1 transcriptional regulator TyrR compare
DDA3937_RS08990 -0.5 -2.7 glutaredoxin-dependent arsenate reductase compare
DDA3937_RS18675 -0.5 -1.8 ABC transporter ATP-binding protein compare
DDA3937_RS20265 -0.5 -0.7 YeeE/YedE family protein compare
DDA3937_RS13905 -0.5 -2.0 hypothetical protein compare
DDA3937_RS13490 -0.5 -1.0 anti-sigma-28 factor FlgM compare
DDA3937_RS12850 -0.5 -1.4 cell division protein ZapC compare
DDA3937_RS21605 -0.5 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS16550 -0.5 -1.7 YfiR family protein compare
DDA3937_RS16205 -0.5 -2.2 fructose-1-phosphate/6-phosphogluconate phosphatase compare
DDA3937_RS00980 -0.5 -4.1 HTH-type transcriptional repressor FabR compare
DDA3937_RS03480 -0.5 -4.2 acetate--CoA ligase compare
DDA3937_RS13910 -0.5 -3.7 hypothetical protein compare
DDA3937_RS07465 -0.5 -1.4 respiratory chain complex I subunit 1 family protein compare
DDA3937_RS08555 -0.5 -1.1 DUF2474 domain-containing protein compare
DDA3937_RS13370 -0.5 -3.4 flagellar motor switch protein FliG compare
DDA3937_RS14470 -0.5 -1.5 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS01530 -0.5 -1.7 RNA polymerase factor sigma-54 compare
DDA3937_RS01420 -0.5 -3.4 oxidoreductase compare
DDA3937_RS01715 -0.5 -3.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
DDA3937_RS11055 -0.5 -2.7 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS00795 -0.5 -1.8 phage tail protein compare
DDA3937_RS10200 -0.5 -1.8 YebY family protein compare
DDA3937_RS01865 -0.5 -3.0 YhbP family protein compare
DDA3937_RS10755 -0.5 -1.9 paraquat-inducible protein A compare
DDA3937_RS13565 -0.5 -2.8 flagellar transcriptional regulator FlhD compare
DDA3937_RS06075 -0.5 -1.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS08375 -0.5 -2.1 radical SAM protein compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms