Experiment setATCH110 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS04960 -2.5 -4.3 thymidylate synthase compare
DDA3937_RS19615 -2.1 -5.8 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS09670 -1.9 -7.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS00135 -1.9 -2.4 glutamate--ammonia ligase compare
DDA3937_RS10485 -1.8 -7.3 anthranilate synthase component 1 compare
DDA3937_RS10475 -1.8 -6.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS13340 -1.7 -7.5 flagellin FliC compare
DDA3937_RS12445 -1.7 -2.5 peptide ABC transporter permease SapB compare
DDA3937_RS14475 -1.7 -5.4 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS05725 -1.7 -5.8 Hha toxicity modulator TomB compare
DDA3937_RS18680 -1.6 -5.0 GDP-L-fucose synthase compare
DDA3937_RS09575 -1.6 -2.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS15720 -1.6 -4.5 pyridoxine 5'-phosphate synthase compare
DDA3937_RS10465 -1.6 -5.0 tryptophan synthase subunit beta compare
DDA3937_RS13555 -1.6 -10.2 flagellar motor stator protein MotA compare
DDA3937_RS18080 -1.5 -3.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS18235 -1.5 -11.2 RNA polymerase-associated protein RapA compare
DDA3937_RS22355 -1.5 -3.1 mobilization protein mobC compare
DDA3937_RS18585 -1.4 -2.9 adenylosuccinate synthase compare
DDA3937_RS10480 -1.4 -1.7 glutamine amidotransferase compare
DDA3937_RS10460 -1.4 -5.3 tryptophan synthase subunit alpha compare
DDA3937_RS13330 -1.3 -12.0 methyltransferase regulatory domain-containing protein compare
DDA3937_RS13430 -1.3 -7.8 flagellar hook-associated protein FlgL compare
DDA3937_RS01505 -1.3 -2.8 nucleoside diphosphate kinase regulator compare
DDA3937_RS13320 -1.3 -9.8 ATP-grasp domain-containing protein compare
DDA3937_RS13550 -1.3 -8.3 flagellar motor protein MotB compare
DDA3937_RS19620 -1.3 -2.9 two-component system response regulator OmpR compare
DDA3937_RS00645 -1.3 -6.0 cell division protein FtsX compare
DDA3937_RS13435 -1.2 -10.4 flagellar hook-associated protein FlgK compare
DDA3937_RS22035 -1.2 -2.4 immunity protein RhsIC compare
DDA3937_RS13325 -1.2 -7.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS12900 -1.2 -10.6 porin compare
DDA3937_RS03285 -1.1 -3.0 protein YgfX compare
DDA3937_RS15420 -1.1 -5.3 IMP dehydrogenase compare
DDA3937_RS06735 -1.1 -6.8 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS00640 -1.1 -2.0 cell division ATP-binding protein FtsE compare
DDA3937_RS06040 -1.1 -2.7 DnaA inactivator Hda compare
DDA3937_RS16755 -1.1 -6.5 transcriptional repressor MprA compare
DDA3937_RS13060 -1.1 -2.3 penicillin-binding protein activator LpoB compare
DDA3937_RS12440 -1.1 -4.9 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS10540 -1.1 -2.5 HTH-type transcriptional regulator CysB compare
DDA3937_RS00900 -1.1 -4.4 cell division protein ZapB compare
DDA3937_RS03420 -1.1 -3.8 sugar transferase compare
DDA3937_RS11035 -1.0 -2.7 redox-regulated ATPase YchF compare
DDA3937_RS14465 -1.0 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS08400 -1.0 -1.8 H-NS histone family protein compare
DDA3937_RS13180 -1.0 -5.4 biofilm formation regulator BssS compare
DDA3937_RS10470 -1.0 -3.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS10445 -1.0 -2.5 hypothetical protein compare
DDA3937_RS12450 -1.0 -2.8 peptide ABC transporter permease SapC compare
DDA3937_RS01000 -1.0 -2.2 glutamate racemase compare
DDA3937_RS13930 -1.0 -3.4 transposase compare
DDA3937_RS14630 -1.0 -3.2 tRNA-Arg compare
DDA3937_RS06350 -1.0 -3.7 replication initiation negative regulator SeqA compare
DDA3937_RS13495 -0.9 -3.6 flagellar export chaperone FlgN compare
DDA3937_RS00140 -0.9 -4.4 ribosome-dependent GTPase TypA compare
DDA3937_RS19880 -0.9 -4.8 DNA helicase II compare
DDA3937_RS13480 -0.9 -6.0 flagellar basal body rod protein FlgB compare
DDA3937_RS13315 -0.9 -5.6 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS13300 -0.9 -5.5 RNA polymerase sigma factor FliA compare
DDA3937_RS17150 -0.9 -2.1 gamma-glutamylcyclotransferase compare
DDA3937_RS10410 -0.9 -2.4 IS200/IS605 family transposase compare
DDA3937_RS03700 -0.9 -3.4 inositol 2-dehydrogenase compare
DDA3937_RS13220 -0.8 -3.2 glucan biosynthesis protein G compare
DDA3937_RS09585 -0.8 -1.7 thioredoxin-disulfide reductase compare
DDA3937_RS13345 -0.8 -4.5 flagellar filament capping protein FliD compare
DDA3937_RS13920 -0.8 -1.9 CcdB family protein compare
DDA3937_RS19440 -0.8 -1.9 OsmC family protein compare
DDA3937_RS06475 -0.8 -1.5 succinate--CoA ligase subunit alpha compare
DDA3937_RS11875 -0.8 -3.7 AAA family ATPase compare
DDA3937_RS23305 -0.8 -2.3 hypothetical protein compare
DDA3937_RS13500 -0.8 -3.9 flagellar protein FlhE compare
DDA3937_RS02325 -0.8 -1.7 HTH-type transcriptional activator RhaS compare
DDA3937_RS16110 -0.8 -5.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS13405 -0.8 -5.5 flagellar motor switch protein FliN compare
DDA3937_RS19435 -0.8 -3.3 phosphoribulokinase compare
DDA3937_RS20455 -0.8 -2.5 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS18685 -0.8 -5.8 WbeA compare
DDA3937_RS00925 -0.8 -3.3 cell division protein FtsN compare
DDA3937_RS09580 -0.8 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS14340 -0.8 -3.2 transcriptional regulator LrhA compare
DDA3937_RS08555 -0.8 -1.9 DUF2474 domain-containing protein compare
DDA3937_RS18670 -0.8 -3.5 ABC transporter permease compare
DDA3937_RS05640 -0.8 -4.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS10580 -0.8 -2.1 transcription modulator YdgT compare
DDA3937_RS11080 -0.8 -2.5 exodeoxyribonuclease V subunit beta compare
DDA3937_RS17485 -0.8 -2.1 envelope stress response protein PspG compare
DDA3937_RS17255 -0.7 -3.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DDA3937_RS02915 -0.7 -3.5 TetR/AcrR family transcriptional regulator compare
DDA3937_RS05105 -0.7 -2.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS00835 -0.7 -1.0 2TM domain-containing protein compare
DDA3937_RS21965 -0.7 -0.8 helix-turn-helix domain-containing protein compare
DDA3937_RS22340 -0.7 -2.6 EexN family lipoprotein compare
DDA3937_RS20475 -0.7 -1.8 glycosyltransferase family 4 protein compare
DDA3937_RS20420 -0.7 -3.8 murein hydrolase activator EnvC compare
DDA3937_RS12460 -0.7 -3.6 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS01530 -0.7 -2.7 RNA polymerase factor sigma-54 compare
DDA3937_RS13565 -0.7 -4.7 flagellar transcriptional regulator FlhD compare
DDA3937_RS13365 -0.7 -6.0 flagellar M-ring protein FliF compare
DDA3937_RS13455 -0.7 -4.3 flagellar basal-body rod protein FlgG compare
DDA3937_RS16935 -0.7 -1.6 phosphoadenylyl-sulfate reductase compare
DDA3937_RS20235 -0.7 -3.4 Trk system potassium transporter TrkH compare
DDA3937_RS13410 -0.7 -3.9 flagellar biosynthetic protein FliO compare
DDA3937_RS13310 -0.7 -4.0 FkbM family methyltransferase compare
DDA3937_RS20465 -0.7 -3.3 O-antigen ligase family protein compare
DDA3937_RS14470 -0.7 -1.9 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS13350 -0.7 -2.9 flagellar export chaperone FliS compare
DDA3937_RS10295 -0.7 -2.4 NAD(P)H nitroreductase compare
DDA3937_RS01550 -0.7 -3.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS11970 -0.7 -3.2 RNA chaperone ProQ compare
DDA3937_RS15705 -0.7 -4.3 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS14595 -0.7 -3.4 phosphohistidine phosphatase SixA compare
DDA3937_RS13380 -0.7 -5.5 flagellum-specific ATP synthase FliI compare
DDA3937_RS02815 -0.7 -1.8 transcriptional regulator ExuR compare
DDA3937_RS05865 -0.7 -2.2 2Fe-2S ferredoxin-like protein compare
DDA3937_RS17545 -0.7 -2.6 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS13375 -0.7 -2.3 flagellar assembly protein FliH compare
DDA3937_RS13370 -0.7 -4.6 flagellar motor switch protein FliG compare
DDA3937_RS22235 -0.6 -2.6 immunity 8 family protein compare
DDA3937_RS05595 -0.6 -1.5 protoheme IX farnesyltransferase compare
DDA3937_RS13465 -0.6 -5.7 flagellar hook protein FlgE compare
DDA3937_RS16245 -0.6 -1.4 recombinase RecA compare
DDA3937_RS11205 -0.6 -3.0 septum site-determining protein MinC compare
DDA3937_RS00865 -0.6 -1.0 triose-phosphate isomerase compare
DDA3937_RS05470 -0.6 -2.1 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS06655 -0.6 -3.7 6-phosphogluconolactonase compare
DDA3937_RS13360 -0.6 -2.9 flagellar hook-basal body complex protein FliE compare
DDA3937_RS19140 -0.6 -3.4 Trk system potassium transporter TrkA compare
DDA3937_RS13485 -0.6 -3.9 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS07490 -0.6 -3.4 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS20470 -0.6 -4.5 glycosyltransferase family 9 protein compare
DDA3937_RS13440 -0.6 -4.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS11870 -0.6 -2.1 SIR2 family protein compare
DDA3937_RS13390 -0.6 -4.1 flagellar hook-length control protein FliK compare
DDA3937_RS11965 -0.6 -4.7 carboxy terminal-processing peptidase compare
DDA3937_RS08280 -0.6 -2.1 RhsIA family immunity protein compare
DDA3937_RS15780 -0.6 -3.1 ATP-dependent RNA helicase SrmB compare
DDA3937_RS13560 -0.6 -4.2 flagellar transcriptional regulator FlhC compare
DDA3937_RS13425 -0.6 -4.7 flagellar type III secretion system protein FliR compare
DDA3937_RS10125 -0.6 -2.2 pyruvate kinase compare
DDA3937_RS02395 -0.6 -1.1 Xaa-Pro aminopeptidase compare
DDA3937_RS13510 -0.6 -4.6 flagellar type III secretion system protein FlhB compare
DDA3937_RS16095 -0.6 -2.0 16S ribosomal RNA compare
DDA3937_RS20305 -0.6 -2.6 Sec-independent protein translocase subunit TatC compare
DDA3937_RS13420 -0.6 -3.8 flagellar biosynthesis protein FliQ compare
DDA3937_RS13135 -0.6 -2.5 phosphate acyltransferase PlsX compare
DDA3937_RS01695 -0.6 -2.0 divisome-associated lipoprotein YraP compare
DDA3937_RS10985 -0.6 -1.4 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS13505 -0.6 -4.9 flagellar biosynthesis protein FlhA compare
DDA3937_RS21595 -0.6 -2.7 F0F1 ATP synthase subunit I compare
DDA3937_RS04425 -0.6 -3.6 cysteine synthase CysM compare
DDA3937_RS11465 -0.6 -4.4 EAL domain-containing protein compare
DDA3937_RS01525 -0.6 -3.9 ribosome hibernation promoting factor compare
DDA3937_RS04125 -0.6 -2.0 acetyltransferase compare
DDA3937_RS02805 -0.6 -2.5 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS05635 -0.6 -3.1 trigger factor compare
DDA3937_RS10060 -0.5 -1.4 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS00970 -0.5 -2.2 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS20415 -0.5 -2.0 rhodanese-like domain-containing protein compare
DDA3937_RS06985 -0.5 -1.9 type I addiction module toxin, SymE family compare
DDA3937_RS15660 -0.5 -4.5 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS05790 -0.5 -2.4 recombination protein RecR compare
DDA3937_RS13445 -0.5 -3.5 flagellar basal body P-ring protein FlgI compare
DDA3937_RS09115 -0.5 -2.7 DUF3413 domain-containing protein compare
DDA3937_RS12575 -0.5 -0.9 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS09775 -0.5 -1.2 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS13450 -0.5 -4.4 flagellar basal body L-ring protein FlgH compare
DDA3937_RS06855 -0.5 -2.6 DUF1471 domain-containing protein compare
DDA3937_RS13460 -0.5 -3.9 flagellar basal body rod protein FlgF compare
DDA3937_RS21690 -0.5 -2.2 hypothetical protein compare
DDA3937_RS18665 -0.5 -4.8 GDP-mannose 4,6-dehydratase compare
DDA3937_RS08575 -0.5 -2.8 cyclic pyranopterin monophosphate synthase MoaC compare
DDA3937_RS16750 -0.5 -1.8 L-valine transporter subunit YgaH compare
DDA3937_RS06770 -0.5 -1.2 oligosaccharide flippase family protein compare
DDA3937_RS02400 -0.5 -2.7 YecA family protein compare
DDA3937_RS13385 -0.5 -2.8 flagella biosynthesis chaperone FliJ compare
DDA3937_RS14480 -0.5 -2.2 sensor histidine kinase compare
DDA3937_RS19930 -0.5 -1.8 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS10855 -0.5 -1.1 hypothetical protein compare
DDA3937_RS23485 -0.5 -1.3 hypothetical protein compare
DDA3937_RS04845 -0.5 -2.1 helix-turn-helix transcriptional regulator compare
DDA3937_RS17985 -0.5 -3.1 cell division protein ZapD compare
DDA3937_RS16560 -0.5 -2.3 xanthine phosphoribosyltransferase compare
DDA3937_RS05150 -0.5 -1.7 sigma E protease regulator RseP compare
DDA3937_RS14945 -0.5 -1.3 hypothetical protein compare
DDA3937_RS07605 -0.5 -1.5 phosphonate C-P lyase system protein PhnH compare
DDA3937_RS18430 -0.5 -2.1 protein CreA compare
DDA3937_RS19300 -0.5 -2.3 bacterioferritin-associated ferredoxin compare
DDA3937_RS04130 -0.5 -1.3 hypothetical protein compare
DDA3937_RS01820 -0.5 -1.8 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS02685 -0.5 -1.2 hypothetical protein compare
DDA3937_RS06480 -0.5 -1.2 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS13400 -0.5 -3.8 flagellar motor switch protein FliM compare
DDA3937_RS23425 -0.5 -2.1 hypothetical protein compare
DDA3937_RS13470 -0.5 -3.8 flagellar hook assembly protein FlgD compare
DDA3937_RS03475 -0.5 -3.1 DUF485 domain-containing protein compare
DDA3937_RS17995 -0.5 -1.7 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS09235 -0.5 -1.2 1-phosphofructokinase compare
DDA3937_RS11210 -0.5 -1.6 septum site-determining protein MinD compare
DDA3937_RS05895 -0.5 -1.6 transcriptional regulator RcsB compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms