Experiment set9TCH421 for Dickeya dadantii 3937

Compare to:

1.88mM_PTB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS05645 -2.6 -14.2 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS19615 -2.5 -4.4 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS00640 -2.3 -3.7 cell division ATP-binding protein FtsE compare
DDA3937_RS18585 -2.3 -3.0 adenylosuccinate synthase compare
DDA3937_RS05640 -2.1 -8.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS17830 -2.0 -1.9 DeoR/GlpR transcriptional regulator compare
DDA3937_RS06040 -1.9 -2.5 DnaA inactivator Hda compare
DDA3937_RS00600 -1.9 -2.3 DcrB family lipoprotein compare
DDA3937_RS10540 -1.8 -2.9 HTH-type transcriptional regulator CysB compare
DDA3937_RS04960 -1.7 -3.0 thymidylate synthase compare
DDA3937_RS02685 -1.7 -3.2 hypothetical protein compare
DDA3937_RS22035 -1.6 -2.7 immunity protein RhsIC compare
DDA3937_RS00900 -1.6 -5.3 cell division protein ZapB compare
DDA3937_RS13060 -1.6 -1.7 penicillin-binding protein activator LpoB compare
DDA3937_RS09575 -1.5 -1.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS10435 -1.5 -2.3 septation protein A compare
DDA3937_RS11460 -1.4 -4.5 protease HtpX compare
DDA3937_RS11210 -1.4 -4.4 septum site-determining protein MinD compare
DDA3937_RS19930 -1.3 -3.9 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS05150 -1.3 -4.4 sigma E protease regulator RseP compare
DDA3937_RS10725 -1.3 -2.8 acyltransferase family protein compare
DDA3937_RS14465 -1.3 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS02915 -1.2 -4.2 TetR/AcrR family transcriptional regulator compare
DDA3937_RS04125 -1.2 -3.2 acetyltransferase compare
DDA3937_RS06350 -1.2 -3.8 replication initiation negative regulator SeqA compare
DDA3937_RS09580 -1.2 -2.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS19880 -1.2 -5.7 DNA helicase II compare
DDA3937_RS04140 -1.2 -1.2 hypothetical protein compare
DDA3937_RS12800 -1.2 -3.3 AI-2E family transporter YdiK compare
DDA3937_RS06100 -1.1 -1.9 M15 family metallopeptidase compare
DDA3937_RS06145 -1.1 -2.1 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS13215 -1.1 -3.8 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS03305 -1.1 -7.5 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
DDA3937_RS03300 -1.1 -1.4 site-specific tyrosine recombinase XerD compare
DDA3937_RS17015 -1.1 -9.9 GTP diphosphokinase compare
DDA3937_RS15545 -1.1 -2.0 cysteine desulfurase compare
DDA3937_RS23075 -1.0 -3.2 hypothetical protein compare
DDA3937_RS07795 -1.0 -2.4 GNAT family N-acetyltransferase compare
DDA3937_RS12620 -1.0 -3.5 HTH-type transcriptional repressor PurR compare
DDA3937_RS00925 -1.0 -3.4 cell division protein FtsN compare
DDA3937_RS01505 -1.0 -1.6 nucleoside diphosphate kinase regulator compare
DDA3937_RS01790 -1.0 -7.0 cell division protein FtsP compare
DDA3937_RS16915 -1.0 -4.5 adenylyl-sulfate kinase compare
DDA3937_RS01600 -1.0 -6.4 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS20415 -0.9 -2.4 rhodanese-like domain-containing protein compare
DDA3937_RS10675 -0.9 -2.0 ROK family transcriptional regulator compare
DDA3937_RS21310 -0.9 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS12900 -0.9 -8.3 porin compare
DDA3937_RS00645 -0.9 -4.7 cell division protein FtsX compare
DDA3937_RS12490 -0.9 -8.1 exoribonuclease II compare
DDA3937_RS02815 -0.9 -2.4 transcriptional regulator ExuR compare
DDA3937_RS15715 -0.9 -1.9 holo-ACP synthase compare
DDA3937_RS10500 -0.9 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS22235 -0.9 -2.7 immunity 8 family protein compare
DDA3937_RS03250 -0.9 -2.0 glycine cleavage system protein GcvH compare
DDA3937_RS23190 -0.8 -1.7 hypothetical protein compare
DDA3937_RS02150 -0.8 -1.7 AAA family ATPase compare
DDA3937_RS15765 -0.8 -6.9 RNA polymerase sigma factor RpoE compare
DDA3937_RS06535 -0.8 -1.4 tRNA-Lys compare
DDA3937_RS06155 -0.8 -5.7 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS06480 -0.8 -1.9 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS03280 -0.8 -1.6 FAD assembly factor SdhE compare
DDA3937_RS16965 -0.8 -2.9 6-carboxytetrahydropterin synthase QueD compare
DDA3937_RS19510 -0.8 -2.0 peptidylprolyl isomerase A compare
DDA3937_RS14340 -0.8 -3.4 transcriptional regulator LrhA compare
DDA3937_RS01000 -0.8 -2.2 glutamate racemase compare
DDA3937_RS17135 -0.8 -1.3 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS20975 -0.8 -4.6 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS04315 -0.8 -2.6 RnfH family protein compare
DDA3937_RS23340 -0.8 -1.5 ilvB operon leader peptide IvbL compare
DDA3937_RS19780 -0.8 -1.3 gluconokinase compare
DDA3937_RS12445 -0.7 -1.5 peptide ABC transporter permease SapB compare
DDA3937_RS01520 -0.7 -3.7 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS03285 -0.7 -1.1 protein YgfX compare
DDA3937_RS01570 -0.7 -4.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS10440 -0.7 -2.3 UPF0259 family protein compare
DDA3937_RS13630 -0.7 -2.2 hypothetical protein compare
DDA3937_RS17160 -0.7 -4.1 outer membrane protein assembly factor compare
DDA3937_RS17320 -0.7 -3.2 XTP/dITP diphosphatase compare
DDA3937_RS11035 -0.7 -2.6 redox-regulated ATPase YchF compare
DDA3937_RS15915 -0.7 -2.0 bifunctional glycosyl transferase/transpeptidase compare
DDA3937_RS03400 -0.7 -1.9 hypothetical protein compare
DDA3937_RS00970 -0.7 -2.0 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS13160 -0.7 -1.8 ribonuclease E compare
DDA3937_RS16840 -0.7 -1.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS06305 -0.7 -3.7 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS14630 -0.7 -2.3 tRNA-Arg compare
DDA3937_RS18005 -0.7 -2.1 secA regulator SecM compare
DDA3937_RS04895 -0.7 -1.5 oxidative damage protection protein compare
DDA3937_RS11445 -0.7 -3.9 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS13220 -0.7 -2.2 glucan biosynthesis protein G compare
DDA3937_RS01410 -0.7 -2.9 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS13135 -0.7 -3.4 phosphate acyltransferase PlsX compare
DDA3937_RS06050 -0.6 -3.5 M48 family metallopeptidase compare
DDA3937_RS00560 -0.6 -3.7 insulinase family protein compare
DDA3937_RS00955 -0.6 -4.5 bifunctional aspartate kinase/homoserine dehydrogenase II compare
DDA3937_RS15725 -0.6 -3.2 DNA repair protein RecO compare
DDA3937_RS15340 -0.6 -1.4 hydroxyethylthiazole kinase compare
DDA3937_RS16595 -0.6 -1.3 acyl-CoA dehydrogenase FadE compare
DDA3937_RS04680 -0.6 -1.7 TIGR00645 family protein compare
DDA3937_RS02665 -0.6 -1.5 type II toxin-antitoxin system toxin CcdB compare
DDA3937_RS07180 -0.6 -2.6 VOC family protein compare
DDA3937_RS12500 -0.6 -1.1 carbon starvation protein A compare
DDA3937_RS20080 -0.6 -3.4 ATP-dependent RNA helicase RhlB compare
DDA3937_RS09115 -0.6 -3.7 DUF3413 domain-containing protein compare
DDA3937_RS05895 -0.6 -2.5 transcriptional regulator RcsB compare
DDA3937_RS10985 -0.6 -2.1 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS21285 -0.6 -2.7 DNA replication/repair protein RecF compare
DDA3937_RS05650 -0.6 -2.5 endopeptidase La compare
DDA3937_RS11205 -0.6 -3.3 septum site-determining protein MinC compare
DDA3937_RS02210 -0.6 -3.5 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS12520 -0.6 -2.0 stress response translation initiation inhibitor YciH compare
DDA3937_RS22355 -0.6 -2.2 mobilization protein mobC compare
DDA3937_RS00170 -0.6 -3.4 ATP-dependent DNA helicase RecG compare
DDA3937_RS18180 -0.6 -1.4 DedA family protein compare
DDA3937_RS01460 -0.6 -3.8 metalloprotease TldD compare
DDA3937_RS09585 -0.6 -1.3 thioredoxin-disulfide reductase compare
DDA3937_RS01605 -0.6 -2.6 serine endoprotease DegQ compare
DDA3937_RS13205 -0.6 -2.2 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS23085 -0.6 -1.8 hypothetical protein compare
DDA3937_RS10410 -0.6 -1.3 IS200/IS605 family transposase compare
DDA3937_RS00325 -0.6 -2.1 DUF1471 domain-containing protein compare
DDA3937_RS11715 -0.6 -2.4 hypothetical protein compare
DDA3937_RS20235 -0.6 -2.9 Trk system potassium transporter TrkH compare
DDA3937_RS10385 -0.6 -5.0 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10160 -0.6 -2.1 copper homeostasis periplasmic binding protein CopC compare
DDA3937_RS05725 -0.6 -1.5 Hha toxicity modulator TomB compare
DDA3937_RS14470 -0.6 -1.9 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS10445 -0.6 -1.6 hypothetical protein compare
DDA3937_RS13495 -0.6 -2.1 flagellar export chaperone FlgN compare
DDA3937_RS10395 -0.6 -5.2 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS10560 -0.6 -2.4 electron transport complex subunit RsxD compare
DDA3937_RS10315 -0.6 -1.9 trimeric intracellular cation channel family protein compare
DDA3937_RS01855 -0.6 -1.5 aminoimidazole riboside kinase compare
DDA3937_RS23250 -0.6 -3.4 endolytic transglycosylase MltG compare
DDA3937_RS21105 -0.6 -2.3 ABC transporter permease compare
DDA3937_RS17600 -0.5 -1.4 IS110 family transposase compare
DDA3937_RS01455 -0.5 -3.1 AsmA2 domain-containing protein YhdP compare
DDA3937_RS19140 -0.5 -2.7 Trk system potassium transporter TrkA compare
DDA3937_RS04490 -0.5 -1.7 cysteine synthase A compare
DDA3937_RS10390 -0.5 -4.8 ABC transporter ATP-binding protein compare
DDA3937_RS12440 -0.5 -2.3 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS09090 -0.5 -2.7 hypothetical protein compare
DDA3937_RS11180 -0.5 -2.2 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS12460 -0.5 -2.6 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS01700 -0.5 -3.5 DnaA initiator-associating protein DiaA compare
DDA3937_RS10545 -0.5 -2.5 endonuclease III compare
DDA3937_RS00915 -0.5 -1.9 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS05900 -0.5 -3.7 phosphotransferase RcsD compare
DDA3937_RS16245 -0.5 -1.2 recombinase RecA compare
DDA3937_RS13110 -0.5 -2.6 beta-ketoacyl-ACP synthase II compare
DDA3937_RS17170 -0.5 -2.3 HlyC/CorC family transporter compare
DDA3937_RS14385 -0.5 -2.7 phosphate acetyltransferase compare
DDA3937_RS08645 -0.5 -3.0 ATP-dependent RNA helicase RhlE compare
DDA3937_RS20420 -0.5 -2.2 murein hydrolase activator EnvC compare
DDA3937_RS03485 -0.5 -0.9 hypothetical protein compare
DDA3937_RS05615 -0.5 -0.8 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS03660 -0.5 -2.7 2,5-didehydrogluconate reductase DkgB compare
DDA3937_RS05790 -0.5 -2.1 recombination protein RecR compare
DDA3937_RS19755 -0.5 -1.0 cold-shock protein compare
DDA3937_RS03310 -0.5 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
DDA3937_RS08440 -0.5 -2.3 DUF3168 domain-containing protein compare
DDA3937_RS05395 -0.5 -2.0 pyrimidine/purine nucleoside phosphorylase compare
DDA3937_RS01865 -0.5 -2.3 YhbP family protein compare
DDA3937_RS04180 -0.5 -1.6 ogr/Delta-like zinc finger family protein compare
DDA3937_RS04050 -0.5 -2.1 AAA family ATPase compare
DDA3937_RS13790 -0.5 -2.1 helix-turn-helix transcriptional regulator compare
DDA3937_RS10370 -0.5 -1.8 YchE family NAAT transporter compare
DDA3937_RS18610 -0.5 -2.5 RNA chaperone Hfq compare
DDA3937_RS10310 -0.5 -2.4 exodeoxyribonuclease III compare
DDA3937_RS08885 -0.5 -1.7 hypothetical protein compare
DDA3937_RS02805 -0.5 -2.0 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS01515 -0.5 -3.3 RNase adapter RapZ compare
DDA3937_RS07255 -0.5 -1.6 hypothetical protein compare
DDA3937_RS11630 -0.5 -2.5 serine kinase compare
DDA3937_RS22530 -0.5 -1.7 ilv operon leader peptide compare
DDA3937_RS08400 -0.5 -1.1 H-NS histone family protein compare
DDA3937_RS10375 -0.5 -4.5 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS15635 -0.5 -1.9 nitrogen regulatory protein P-II compare
DDA3937_RS19620 -0.5 -1.3 two-component system response regulator OmpR compare
DDA3937_RS18600 -0.5 -0.6 FtsH protease activity modulator HflK compare
DDA3937_RS13740 -0.5 -1.8 DUF736 domain-containing protein compare
DDA3937_RS23400 -0.5 -1.4 hypothetical protein compare
DDA3937_RS16550 -0.5 -1.8 YfiR family protein compare
DDA3937_RS17750 -0.5 -2.1 glucosamine kinase compare
DDA3937_RS00155 -0.5 -2.9 fatty acid biosynthesis protein FabY compare
DDA3937_RS17150 -0.5 -1.3 gamma-glutamylcyclotransferase compare
DDA3937_RS20305 -0.5 -2.2 Sec-independent protein translocase subunit TatC compare
DDA3937_RS03545 -0.5 -2.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS17155 -0.5 -2.9 translocation/assembly module TamB compare
DDA3937_RS18265 -0.5 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
DDA3937_RS12645 -0.4 -1.3 type II secretion system pilot lipoprotein GspS compare
DDA3937_RS13800 -0.4 -2.1 helix-turn-helix transcriptional regulator compare
DDA3937_RS22125 -0.4 -0.7 conjugal transfer protein TrbI compare
DDA3937_RS08140 -0.4 -1.7 metal ABC transporter permease compare
DDA3937_RS15255 -0.4 -2.2 NupC/NupG family nucleoside CNT transporter compare
DDA3937_RS12045 -0.4 -2.3 hypothetical protein compare
DDA3937_RS16650 -0.4 -1.1 amino acid ABC transporter permease compare
DDA3937_RS06475 -0.4 -0.8 succinate--CoA ligase subunit alpha compare
DDA3937_RS10405 -0.4 -0.9 cardiolipin synthase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in stress experiments

For stress potassium_tetraborate across organisms