Experiment set9TCH420 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS04960 -3.0 -4.8 thymidylate synthase compare
DDA3937_RS06040 -2.2 -3.2 DnaA inactivator Hda compare
DDA3937_RS12445 -1.9 -2.8 peptide ABC transporter permease SapB compare
DDA3937_RS03300 -1.8 -2.3 site-specific tyrosine recombinase XerD compare
DDA3937_RS00135 -1.7 -2.7 glutamate--ammonia ligase compare
DDA3937_RS21310 -1.7 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS02150 -1.6 -2.0 AAA family ATPase compare
DDA3937_RS00980 -1.5 -10.8 HTH-type transcriptional repressor FabR compare
DDA3937_RS11970 -1.5 -5.3 RNA chaperone ProQ compare
DDA3937_RS10675 -1.5 -2.6 ROK family transcriptional regulator compare
DDA3937_RS13550 -1.5 -10.0 flagellar motor protein MotB compare
DDA3937_RS13555 -1.4 -8.5 flagellar motor stator protein MotA compare
DDA3937_RS15780 -1.4 -6.2 ATP-dependent RNA helicase SrmB compare
DDA3937_RS13495 -1.4 -4.3 flagellar export chaperone FlgN compare
DDA3937_RS09115 -1.4 -7.0 DUF3413 domain-containing protein compare
DDA3937_RS16245 -1.3 -2.8 recombinase RecA compare
DDA3937_RS12800 -1.3 -3.9 AI-2E family transporter YdiK compare
DDA3937_RS13335 -1.3 -1.8 IS200/IS605 family transposase compare
DDA3937_RS06270 -1.3 -3.0 tRNA-Met compare
DDA3937_RS17830 -1.2 -1.7 DeoR/GlpR transcriptional regulator compare
DDA3937_RS11460 -1.2 -4.3 protease HtpX compare
DDA3937_RS13060 -1.2 -3.4 penicillin-binding protein activator LpoB compare
DDA3937_RS13430 -1.2 -7.3 flagellar hook-associated protein FlgL compare
DDA3937_RS22035 -1.2 -2.5 immunity protein RhsIC compare
DDA3937_RS00640 -1.2 -1.9 cell division ATP-binding protein FtsE compare
DDA3937_RS18680 -1.2 -3.5 GDP-L-fucose synthase compare
DDA3937_RS13435 -1.2 -10.0 flagellar hook-associated protein FlgK compare
DDA3937_RS19880 -1.2 -5.8 DNA helicase II compare
DDA3937_RS23020 -1.2 -2.0 hypothetical protein compare
DDA3937_RS13330 -1.2 -10.2 methyltransferase regulatory domain-containing protein compare
DDA3937_RS11965 -1.2 -8.1 carboxy terminal-processing peptidase compare
DDA3937_RS14475 -1.2 -4.9 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS05615 -1.1 -2.2 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS06735 -1.1 -6.1 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS14465 -1.1 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS16935 -1.1 -3.3 phosphoadenylyl-sulfate reductase compare
DDA3937_RS18585 -1.1 -1.5 adenylosuccinate synthase compare
DDA3937_RS03420 -1.1 -3.3 sugar transferase compare
DDA3937_RS15720 -1.1 -4.7 pyridoxine 5'-phosphate synthase compare
DDA3937_RS13320 -1.1 -8.5 ATP-grasp domain-containing protein compare
DDA3937_RS13470 -1.1 -7.9 flagellar hook assembly protein FlgD compare
DDA3937_RS10500 -1.0 -4.9 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS07765 -1.0 -3.4 ABC transporter ATP-binding protein compare
DDA3937_RS13315 -1.0 -7.3 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS13325 -1.0 -6.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS10315 -1.0 -3.2 trimeric intracellular cation channel family protein compare
DDA3937_RS09590 -1.0 -4.3 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS13565 -1.0 -6.8 flagellar transcriptional regulator FlhD compare
DDA3937_RS18685 -1.0 -6.5 WbeA compare
DDA3937_RS10410 -1.0 -2.2 IS200/IS605 family transposase compare
DDA3937_RS13405 -1.0 -6.5 flagellar motor switch protein FliN compare
DDA3937_RS09015 -1.0 -2.6 hypothetical protein compare
DDA3937_RS13345 -1.0 -5.1 flagellar filament capping protein FliD compare
DDA3937_RS13510 -1.0 -7.7 flagellar type III secretion system protein FlhB compare
DDA3937_RS18665 -0.9 -8.0 GDP-mannose 4,6-dehydratase compare
DDA3937_RS23190 -0.9 -1.4 hypothetical protein compare
DDA3937_RS13505 -0.9 -7.7 flagellar biosynthesis protein FlhA compare
DDA3937_RS00140 -0.9 -4.5 ribosome-dependent GTPase TypA compare
DDA3937_RS13485 -0.9 -5.8 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS13390 -0.9 -5.6 flagellar hook-length control protein FliK compare
DDA3937_RS13340 -0.9 -4.5 flagellin FliC compare
DDA3937_RS06480 -0.9 -2.1 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS02685 -0.9 -2.3 hypothetical protein compare
DDA3937_RS13455 -0.9 -5.7 flagellar basal-body rod protein FlgG compare
DDA3937_RS09575 -0.9 -1.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS12440 -0.9 -3.7 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS20475 -0.9 -1.5 glycosyltransferase family 4 protein compare
DDA3937_RS11365 -0.9 -2.2 oligogalacturonate-specific porin KdgM compare
DDA3937_RS10985 -0.9 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS13450 -0.9 -6.6 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13560 -0.9 -5.5 flagellar transcriptional regulator FlhC compare
DDA3937_RS13365 -0.9 -7.3 flagellar M-ring protein FliF compare
DDA3937_RS11035 -0.8 -3.0 redox-regulated ATPase YchF compare
DDA3937_RS13460 -0.8 -5.3 flagellar basal body rod protein FlgF compare
DDA3937_RS13465 -0.8 -7.3 flagellar hook protein FlgE compare
DDA3937_RS13385 -0.8 -4.0 flagella biosynthesis chaperone FliJ compare
DDA3937_RS10310 -0.8 -4.2 exodeoxyribonuclease III compare
DDA3937_RS13410 -0.8 -5.3 flagellar biosynthetic protein FliO compare
DDA3937_RS17995 -0.8 -2.7 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS01550 -0.8 -3.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS07175 -0.8 -1.7 LysR family transcriptional regulator compare
DDA3937_RS15420 -0.8 -3.8 IMP dehydrogenase compare
DDA3937_RS04945 -0.8 -4.2 RNA pyrophosphohydrolase compare
DDA3937_RS13420 -0.8 -4.6 flagellar biosynthesis protein FliQ compare
DDA3937_RS13380 -0.8 -6.5 flagellum-specific ATP synthase FliI compare
DDA3937_RS06350 -0.8 -3.0 replication initiation negative regulator SeqA compare
DDA3937_RS20235 -0.8 -4.0 Trk system potassium transporter TrkH compare
DDA3937_RS18610 -0.8 -4.4 RNA chaperone Hfq compare
DDA3937_RS11210 -0.8 -2.9 septum site-determining protein MinD compare
DDA3937_RS13475 -0.8 -4.0 flagellar basal body rod protein FlgC compare
DDA3937_RS13480 -0.8 -5.4 flagellar basal body rod protein FlgB compare
DDA3937_RS19915 -0.8 -1.4 class I adenylate cyclase compare
DDA3937_RS13300 -0.8 -5.0 RNA polymerase sigma factor FliA compare
DDA3937_RS19510 -0.8 -2.5 peptidylprolyl isomerase A compare
DDA3937_RS20465 -0.8 -3.1 O-antigen ligase family protein compare
DDA3937_RS14380 -0.8 -2.0 acetate kinase compare
DDA3937_RS10725 -0.8 -1.4 acyltransferase family protein compare
DDA3937_RS13400 -0.8 -5.9 flagellar motor switch protein FliM compare
DDA3937_RS13440 -0.7 -5.1 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS03100 -0.7 -1.8 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS17545 -0.7 -2.7 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS13205 -0.7 -2.9 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS13415 -0.7 -4.7 flagellar type III secretion system pore protein FliP compare
DDA3937_RS17600 -0.7 -1.9 IS110 family transposase compare
DDA3937_RS13370 -0.7 -5.5 flagellar motor switch protein FliG compare
DDA3937_RS12460 -0.7 -3.8 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS04420 -0.7 -3.0 Dyp-type peroxidase compare
DDA3937_RS22235 -0.7 -2.6 immunity 8 family protein compare
DDA3937_RS19140 -0.7 -3.6 Trk system potassium transporter TrkA compare
DDA3937_RS00185 -0.7 -2.0 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS17670 -0.7 -2.3 GPW/gp25 family protein compare
DDA3937_RS08815 -0.7 -1.6 DNA starvation/stationary phase protection protein Dps compare
DDA3937_RS01460 -0.7 -4.5 metalloprotease TldD compare
DDA3937_RS05650 -0.7 -2.6 endopeptidase La compare
DDA3937_RS02815 -0.7 -2.1 transcriptional regulator ExuR compare
DDA3937_RS00645 -0.7 -3.6 cell division protein FtsX compare
DDA3937_RS06740 -0.7 -3.8 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS03310 -0.7 -4.2 single-stranded-DNA-specific exonuclease RecJ compare
DDA3937_RS10440 -0.7 -2.3 UPF0259 family protein compare
DDA3937_RS20975 -0.7 -4.2 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS13445 -0.7 -4.3 flagellar basal body P-ring protein FlgI compare
DDA3937_RS13425 -0.7 -4.9 flagellar type III secretion system protein FliR compare
DDA3937_RS06305 -0.6 -3.7 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS12620 -0.6 -2.6 HTH-type transcriptional repressor PurR compare
DDA3937_RS20305 -0.6 -2.9 Sec-independent protein translocase subunit TatC compare
DDA3937_RS19930 -0.6 -2.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS20415 -0.6 -1.8 rhodanese-like domain-containing protein compare
DDA3937_RS23420 -0.6 -2.6 hypothetical protein compare
DDA3937_RS02610 -0.6 -4.2 hypothetical protein compare
DDA3937_RS09520 -0.6 -2.0 heavy metal-binding domain-containing protein compare
DDA3937_RS16095 -0.6 -2.2 16S ribosomal RNA compare
DDA3937_RS14905 -0.6 -1.8 PTS transporter subunit EIIB compare
DDA3937_RS09580 -0.6 -1.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS05640 -0.6 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS19615 -0.6 -2.0 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS22040 -0.6 -2.4 hypothetical protein compare
DDA3937_RS12425 -0.6 -1.2 phage shock protein PspA compare
DDA3937_RS15705 -0.6 -4.0 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS15715 -0.6 -1.6 holo-ACP synthase compare
DDA3937_RS16005 -0.6 -1.9 YacC family pilotin-like protein compare
DDA3937_RS01000 -0.6 -1.7 glutamate racemase compare
DDA3937_RS04480 -0.6 -3.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS18600 -0.6 -0.9 FtsH protease activity modulator HflK compare
DDA3937_RS01605 -0.6 -2.5 serine endoprotease DegQ compare
DDA3937_RS16840 -0.6 -1.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS15255 -0.6 -2.5 NupC/NupG family nucleoside CNT transporter compare
DDA3937_RS13490 -0.6 -1.4 anti-sigma-28 factor FlgM compare
DDA3937_RS13350 -0.6 -2.7 flagellar export chaperone FliS compare
DDA3937_RS13375 -0.6 -2.0 flagellar assembly protein FliH compare
DDA3937_RS11715 -0.6 -2.7 hypothetical protein compare
DDA3937_RS05595 -0.6 -1.2 protoheme IX farnesyltransferase compare
DDA3937_RS17180 -0.6 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS12500 -0.6 -1.3 carbon starvation protein A compare
DDA3937_RS07465 -0.6 -2.2 respiratory chain complex I subunit 1 family protein compare
DDA3937_RS10405 -0.6 -0.9 cardiolipin synthase compare
DDA3937_RS13990 -0.6 -2.2 TIGR04141 family sporadically distributed protein compare
DDA3937_RS00975 -0.6 -1.4 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS01695 -0.6 -1.8 divisome-associated lipoprotein YraP compare
DDA3937_RS21285 -0.5 -2.5 DNA replication/repair protein RecF compare
DDA3937_RS14470 -0.5 -1.5 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS06700 -0.5 -3.5 outer membrane assembly protein AsmA compare
DDA3937_RS10850 -0.5 -4.6 virulence factor compare
DDA3937_RS06695 -0.5 -2.2 dCTP deaminase compare
DDA3937_RS00420 -0.5 -2.6 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS13175 -0.5 -1.9 DNA damage-inducible protein I compare
DDA3937_RS05150 -0.5 -1.9 sigma E protease regulator RseP compare
DDA3937_RS04195 -0.5 -2.7 GPO family capsid scaffolding protein compare
DDA3937_RS05105 -0.5 -2.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS17150 -0.5 -1.7 gamma-glutamylcyclotransferase compare
DDA3937_RS13500 -0.5 -2.5 flagellar protein FlhE compare
DDA3937_RS18755 -0.5 -1.4 organic hydroperoxide resistance protein compare
DDA3937_RS06715 -0.5 -1.2 protein-tyrosine-phosphatase compare
DDA3937_RS10445 -0.5 -1.7 hypothetical protein compare
DDA3937_RS00125 -0.5 -1.2 nitrogen regulation protein NR(I) compare
DDA3937_RS00900 -0.5 -2.9 cell division protein ZapB compare
DDA3937_RS09945 -0.5 -1.8 LysR family transcriptional regulator compare
DDA3937_RS12520 -0.5 -2.1 stress response translation initiation inhibitor YciH compare
DDA3937_RS21605 -0.5 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS03250 -0.5 -1.3 glycine cleavage system protein GcvH compare
DDA3937_RS05030 -0.5 -2.8 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
DDA3937_RS11465 -0.5 -4.3 EAL domain-containing protein compare
DDA3937_RS16965 -0.5 -2.2 6-carboxytetrahydropterin synthase QueD compare
DDA3937_RS13360 -0.5 -2.2 flagellar hook-basal body complex protein FliE compare
DDA3937_RS13310 -0.5 -2.9 FkbM family methyltransferase compare
DDA3937_RS04125 -0.5 -2.2 acetyltransferase compare
DDA3937_RS11220 -0.5 -2.3 ribonuclease D compare
DDA3937_RS20085 -0.5 -2.0 exopolyphosphatase compare
DDA3937_RS04310 -0.5 -1.2 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS18265 -0.5 -1.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
DDA3937_RS23075 -0.5 -1.9 hypothetical protein compare
DDA3937_RS13110 -0.5 -2.7 beta-ketoacyl-ACP synthase II compare
DDA3937_RS08885 -0.5 -1.4 hypothetical protein compare
DDA3937_RS11080 -0.5 -1.5 exodeoxyribonuclease V subunit beta compare
DDA3937_RS00385 -0.5 -2.0 DUF1471 domain-containing protein compare
DDA3937_RS18670 -0.5 -1.2 ABC transporter permease compare
DDA3937_RS06690 -0.5 -3.5 uridine kinase compare
DDA3937_RS15060 -0.5 -1.1 imidazolonepropionase compare
DDA3937_RS00970 -0.5 -1.3 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS10540 -0.5 -1.1 HTH-type transcriptional regulator CysB compare
DDA3937_RS09670 -0.5 -3.0 3-phosphoserine/phosphohydroxythreonine transaminase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in control experiments