Experiment set9TCH417 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS04960 -2.9 -4.2 thymidylate synthase compare
DDA3937_RS13060 -2.7 -5.1 penicillin-binding protein activator LpoB compare
DDA3937_RS00135 -2.5 -2.9 glutamate--ammonia ligase compare
DDA3937_RS09575 -2.4 -2.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS01065 -2.0 -2.0 elongation factor Tu compare
DDA3937_RS22035 -1.8 -3.1 immunity protein RhsIC compare
DDA3937_RS18680 -1.7 -4.1 GDP-L-fucose synthase compare
DDA3937_RS13555 -1.7 -10.8 flagellar motor stator protein MotA compare
DDA3937_RS00980 -1.6 -10.6 HTH-type transcriptional repressor FabR compare
DDA3937_RS13550 -1.5 -10.1 flagellar motor protein MotB compare
DDA3937_RS12450 -1.5 -3.1 peptide ABC transporter permease SapC compare
DDA3937_RS12445 -1.4 -2.3 peptide ABC transporter permease SapB compare
DDA3937_RS11970 -1.4 -4.4 RNA chaperone ProQ compare
DDA3937_RS11965 -1.4 -10.2 carboxy terminal-processing peptidase compare
DDA3937_RS14475 -1.4 -5.3 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS11210 -1.4 -4.3 septum site-determining protein MinD compare
DDA3937_RS10540 -1.4 -2.6 HTH-type transcriptional regulator CysB compare
DDA3937_RS15720 -1.4 -5.3 pyridoxine 5'-phosphate synthase compare
DDA3937_RS06735 -1.2 -6.5 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS05105 -1.2 -4.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS21605 -1.2 -5.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS21965 -1.2 -1.9 helix-turn-helix domain-containing protein compare
DDA3937_RS11365 -1.2 -1.9 oligogalacturonate-specific porin KdgM compare
DDA3937_RS14465 -1.2 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS13435 -1.2 -9.7 flagellar hook-associated protein FlgK compare
DDA3937_RS09115 -1.2 -5.3 DUF3413 domain-containing protein compare
DDA3937_RS13330 -1.2 -10.3 methyltransferase regulatory domain-containing protein compare
DDA3937_RS15780 -1.1 -3.7 ATP-dependent RNA helicase SrmB compare
DDA3937_RS13320 -1.1 -8.1 ATP-grasp domain-containing protein compare
DDA3937_RS12620 -1.1 -3.5 HTH-type transcriptional repressor PurR compare
DDA3937_RS13325 -1.1 -6.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS06480 -1.1 -2.7 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS13340 -1.1 -5.1 flagellin FliC compare
DDA3937_RS21310 -1.1 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS06350 -1.1 -4.5 replication initiation negative regulator SeqA compare
DDA3937_RS13430 -1.1 -6.7 flagellar hook-associated protein FlgL compare
DDA3937_RS01550 -1.1 -4.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS10675 -1.1 -1.5 ROK family transcriptional regulator compare
DDA3937_RS11035 -1.0 -3.5 redox-regulated ATPase YchF compare
DDA3937_RS09585 -1.0 -2.1 thioredoxin-disulfide reductase compare
DDA3937_RS13300 -1.0 -6.4 RNA polymerase sigma factor FliA compare
DDA3937_RS13360 -1.0 -3.6 flagellar hook-basal body complex protein FliE compare
DDA3937_RS02685 -1.0 -2.3 hypothetical protein compare
DDA3937_RS13345 -1.0 -5.1 flagellar filament capping protein FliD compare
DDA3937_RS13475 -1.0 -4.2 flagellar basal body rod protein FlgC compare
DDA3937_RS13315 -1.0 -6.5 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS18685 -1.0 -6.3 WbeA compare
DDA3937_RS01530 -1.0 -3.0 RNA polymerase factor sigma-54 compare
DDA3937_RS19880 -1.0 -4.5 DNA helicase II compare
DDA3937_RS17665 -1.0 -3.5 PAAR domain-containing protein compare
DDA3937_RS20885 -1.0 -1.9 MarR family transcriptional regulator compare
DDA3937_RS19140 -0.9 -4.4 Trk system potassium transporter TrkA compare
DDA3937_RS01505 -0.9 -2.0 nucleoside diphosphate kinase regulator compare
DDA3937_RS00125 -0.9 -2.0 nitrogen regulation protein NR(I) compare
DDA3937_RS13220 -0.9 -3.0 glucan biosynthesis protein G compare
DDA3937_RS18610 -0.9 -6.1 RNA chaperone Hfq compare
DDA3937_RS05150 -0.9 -4.3 sigma E protease regulator RseP compare
DDA3937_RS12460 -0.9 -3.9 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS12440 -0.9 -3.8 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS10985 -0.9 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS13505 -0.9 -7.3 flagellar biosynthesis protein FlhA compare
DDA3937_RS18665 -0.9 -7.4 GDP-mannose 4,6-dehydratase compare
DDA3937_RS13565 -0.9 -5.9 flagellar transcriptional regulator FlhD compare
DDA3937_RS13160 -0.9 -2.0 ribonuclease E compare
DDA3937_RS06700 -0.9 -5.4 outer membrane assembly protein AsmA compare
DDA3937_RS10310 -0.9 -4.2 exodeoxyribonuclease III compare
DDA3937_RS13560 -0.8 -5.6 flagellar transcriptional regulator FlhC compare
DDA3937_RS13400 -0.8 -5.9 flagellar motor switch protein FliM compare
DDA3937_RS12800 -0.8 -2.5 AI-2E family transporter YdiK compare
DDA3937_RS13465 -0.8 -7.2 flagellar hook protein FlgE compare
DDA3937_RS13485 -0.8 -4.8 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS13390 -0.8 -4.8 flagellar hook-length control protein FliK compare
DDA3937_RS05465 -0.8 -3.9 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
DDA3937_RS20465 -0.8 -3.4 O-antigen ligase family protein compare
DDA3937_RS22040 -0.8 -1.7 hypothetical protein compare
DDA3937_RS13350 -0.8 -3.0 flagellar export chaperone FliS compare
DDA3937_RS06685 -0.8 -2.1 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS09590 -0.8 -3.5 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS11220 -0.8 -2.8 ribonuclease D compare
DDA3937_RS04945 -0.8 -4.2 RNA pyrophosphohydrolase compare
DDA3937_RS13385 -0.8 -3.5 flagella biosynthesis chaperone FliJ compare
DDA3937_RS13450 -0.8 -6.1 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13405 -0.8 -5.6 flagellar motor switch protein FliN compare
DDA3937_RS10315 -0.8 -2.2 trimeric intracellular cation channel family protein compare
DDA3937_RS11460 -0.8 -3.0 protease HtpX compare
DDA3937_RS17600 -0.8 -1.9 IS110 family transposase compare
DDA3937_RS03420 -0.8 -2.8 sugar transferase compare
DDA3937_RS05595 -0.8 -1.5 protoheme IX farnesyltransferase compare
DDA3937_RS22125 -0.8 -2.0 conjugal transfer protein TrbI compare
DDA3937_RS13370 -0.8 -5.5 flagellar motor switch protein FliG compare
DDA3937_RS20560 -0.8 -1.4 L-Ala-D/L-Glu epimerase compare
DDA3937_RS13460 -0.8 -4.9 flagellar basal body rod protein FlgF compare
DDA3937_RS06040 -0.7 -1.4 DnaA inactivator Hda compare
DDA3937_RS13495 -0.7 -2.7 flagellar export chaperone FlgN compare
DDA3937_RS18560 -0.7 -1.9 glutathione synthase compare
DDA3937_RS12170 -0.7 -1.8 hypothetical protein compare
DDA3937_RS13380 -0.7 -6.0 flagellum-specific ATP synthase FliI compare
DDA3937_RS15705 -0.7 -4.7 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS14630 -0.7 -2.3 tRNA-Arg compare
DDA3937_RS13415 -0.7 -4.4 flagellar type III secretion system pore protein FliP compare
DDA3937_RS13410 -0.7 -4.2 flagellar biosynthetic protein FliO compare
DDA3937_RS18600 -0.7 -1.5 FtsH protease activity modulator HflK compare
DDA3937_RS13470 -0.7 -5.2 flagellar hook assembly protein FlgD compare
DDA3937_RS00140 -0.7 -3.4 ribosome-dependent GTPase TypA compare
DDA3937_RS13365 -0.7 -6.0 flagellar M-ring protein FliF compare
DDA3937_RS16245 -0.7 -1.6 recombinase RecA compare
DDA3937_RS15420 -0.7 -3.3 IMP dehydrogenase compare
DDA3937_RS04420 -0.7 -3.4 Dyp-type peroxidase compare
DDA3937_RS13215 -0.7 -3.0 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS00925 -0.7 -3.2 cell division protein FtsN compare
DDA3937_RS19915 -0.7 -1.1 class I adenylate cyclase compare
DDA3937_RS00900 -0.7 -3.6 cell division protein ZapB compare
DDA3937_RS13310 -0.7 -4.1 FkbM family methyltransferase compare
DDA3937_RS18080 -0.7 -1.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS00750 -0.7 -1.1 DUF2756 domain-containing protein compare
DDA3937_RS13455 -0.7 -4.4 flagellar basal-body rod protein FlgG compare
DDA3937_RS18095 -0.7 -1.9 catabolite repressor/activator compare
DDA3937_RS13510 -0.7 -5.8 flagellar type III secretion system protein FlhB compare
DDA3937_RS02395 -0.7 -0.9 Xaa-Pro aminopeptidase compare
DDA3937_RS14470 -0.7 -1.9 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS05775 -0.7 -1.7 adenine phosphoribosyltransferase compare
DDA3937_RS00645 -0.7 -3.1 cell division protein FtsX compare
DDA3937_RS04480 -0.7 -3.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS20235 -0.7 -3.4 Trk system potassium transporter TrkH compare
DDA3937_RS02610 -0.7 -4.7 hypothetical protein compare
DDA3937_RS12425 -0.7 -1.2 phage shock protein PspA compare
DDA3937_RS20085 -0.7 -2.3 exopolyphosphatase compare
DDA3937_RS01460 -0.7 -3.8 metalloprotease TldD compare
DDA3937_RS13440 -0.7 -4.6 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS06740 -0.7 -3.0 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS01000 -0.6 -1.8 glutamate racemase compare
DDA3937_RS19930 -0.6 -2.3 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS15255 -0.6 -3.1 NupC/NupG family nucleoside CNT transporter compare
DDA3937_RS10440 -0.6 -2.2 UPF0259 family protein compare
DDA3937_RS18275 -0.6 -4.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS07135 -0.6 -1.6 DUF1272 domain-containing protein compare
DDA3937_RS10500 -0.6 -3.2 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS05615 -0.6 -1.3 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS20975 -0.6 -3.8 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS05640 -0.6 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS08140 -0.6 -2.3 metal ABC transporter permease compare
DDA3937_RS05790 -0.6 -2.5 recombination protein RecR compare
DDA3937_RS14775 -0.6 -1.3 type II secretion system minor pseudopilin GspI compare
DDA3937_RS13425 -0.6 -4.4 flagellar type III secretion system protein FliR compare
DDA3937_RS03150 -0.6 -3.5 purine-nucleoside phosphorylase compare
DDA3937_RS22235 -0.6 -2.1 immunity 8 family protein compare
DDA3937_RS05470 -0.6 -1.7 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS13615 -0.6 -1.6 phage holin family protein compare
DDA3937_RS15635 -0.6 -2.3 nitrogen regulatory protein P-II compare
DDA3937_RS23190 -0.6 -0.7 hypothetical protein compare
DDA3937_RS17265 -0.6 -2.7 nitric oxide-sensing transcriptional repressor NsrR compare
DDA3937_RS23075 -0.6 -1.9 hypothetical protein compare
DDA3937_RS02455 -0.6 -1.8 stress response protein compare
DDA3937_RS13490 -0.5 -1.3 anti-sigma-28 factor FlgM compare
DDA3937_RS13355 -0.5 -2.1 flagellar protein FliT compare
DDA3937_RS17545 -0.5 -2.0 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS03020 -0.5 -1.2 ribosome assembly RNA-binding protein YhbY compare
DDA3937_RS00185 -0.5 -1.5 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS19615 -0.5 -1.7 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06535 -0.5 -1.1 tRNA-Lys compare
DDA3937_RS01250 -0.5 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS06695 -0.5 -1.7 dCTP deaminase compare
DDA3937_RS00175 -0.5 -3.2 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
DDA3937_RS20455 -0.5 -1.4 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS16935 -0.5 -1.8 phosphoadenylyl-sulfate reductase compare
DDA3937_RS16645 -0.5 -2.6 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS11465 -0.5 -4.5 EAL domain-containing protein compare
DDA3937_RS07785 -0.5 -1.2 OsmC family protein compare
DDA3937_RS08365 -0.5 -1.8 hypothetical protein compare
DDA3937_RS02265 -0.5 -1.2 AAA family ATPase compare
DDA3937_RS13205 -0.5 -2.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS22355 -0.5 -1.8 mobilization protein mobC compare
DDA3937_RS13445 -0.5 -3.1 flagellar basal body P-ring protein FlgI compare
DDA3937_RS16050 -0.5 -1.4 ribonuclease HI compare
DDA3937_RS11630 -0.5 -2.7 serine kinase compare
DDA3937_RS23320 -0.5 -1.9 hypothetical protein compare
DDA3937_RS00420 -0.5 -2.2 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS02150 -0.5 -0.9 AAA family ATPase compare
DDA3937_RS04130 -0.5 -1.3 hypothetical protein compare
DDA3937_RS03310 -0.5 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
DDA3937_RS22980 -0.5 -1.1 IS3 family transposase compare
DDA3937_RS06475 -0.5 -1.1 succinate--CoA ligase subunit alpha compare
DDA3937_RS04125 -0.5 -1.9 acetyltransferase compare
DDA3937_RS19360 -0.5 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS10435 -0.5 -1.0 septation protein A compare
DDA3937_RS09670 -0.5 -3.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS14575 -0.5 -1.8 penicillin-insensitive murein endopeptidase compare
DDA3937_RS03480 -0.5 -4.3 acetate--CoA ligase compare
DDA3937_RS06215 -0.5 -2.0 glutamate/aspartate ABC transporter permease GltK compare
DDA3937_RS08400 -0.5 -0.9 H-NS histone family protein compare
DDA3937_RS08440 -0.5 -2.2 DUF3168 domain-containing protein compare
DDA3937_RS14380 -0.5 -1.4 acetate kinase compare
DDA3937_RS13795 -0.5 -1.3 helix-turn-helix domain-containing protein compare
DDA3937_RS20020 -0.5 -3.3 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
DDA3937_RS00115 -0.5 -2.1 Der GTPase-activating protein YihI compare
DDA3937_RS07490 -0.5 -2.7 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS12280 -0.5 -0.8 YnbE family lipoprotein compare
DDA3937_RS14945 -0.5 -1.1 hypothetical protein compare
DDA3937_RS11300 -0.5 -2.3 manganese efflux pump MntP compare
DDA3937_RS17515 -0.5 -0.9 DUF1471 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in control experiments