Experiment set9S576 for Escherichia coli BL21

Compare to:

Control_TnN

200 most important genes:

  gene name fitness t score description  
ECD_t00077 -4.0 -2.1 tRNA-Thr compare
ECD_03797 -2.9 -5.2 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_00634 -2.8 -2.7 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_00054 -2.8 -3.1 protein associated with Co2+ and Mg2+ efflux compare
ECD_00053 -2.8 -3.7 diadenosine tetraphosphatase compare
ECD_04038 -2.8 -1.9 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00933 -2.6 -4.2 outer membrane porin 1a (Ia compare
ECD_03257 -2.5 -2.9 response regulator in two-component regulatory system with EnvZ compare
ECD_03242 -2.4 -2.4 shikimate kinase I compare
ECD_02549 -2.1 -8.1 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03731 -2.1 -3.7 TatABCE protein translocation system subunit compare
ECD_01234 -2.1 -1.5 tryptophan synthase, alpha subunit compare
ECD_02607 -2.0 -1.7 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02507 -1.9 -1.3 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_04070 -1.9 -2.6 50S ribosomal subunit protein L9 compare
ECD_00380 -1.9 -1.6 cytochrome o ubiquinol oxidase subunit IV compare
ECD_03692 -1.8 -6.4 magnesium/nickel/cobalt transporter compare
ECD_03037 -1.8 -2.9 ribosome maturation factor for 30S subunits compare
ECD_03727 -1.7 -2.9 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_02726 -1.6 -3.4 site-specific tyrosine recombinase compare
ECD_01498 -1.6 -2.3 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_02765 -1.5 -3.2 transketolase 1, thiamine triphosphate-binding compare
ECD_02404 -1.5 -1.8 BamABCDE complex OM biogenesis lipoprotein compare
ECD_10005 -1.5 -2.3 Excisionase compare
ECD_03238 -1.4 -2.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_02097 -1.4 -3.5 fructose-1-phosphate kinase compare
ECD_01755 -1.4 -1.9 putative diguanylate cyclase compare
ECD_00209 -1.4 -2.0 lipoprotein compare
ECD_02207 -1.4 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_01030 -1.4 -1.6 glyoxylate/hydroxypyruvate reductase A compare
ECD_01818 -1.4 -1.6 extracellular Colicin M immunity family protein compare
ECD_02463 -1.3 -2.9 back-translocating elongation factor EF4, GTPase compare
ECD_00322 -1.3 -1.7 putative transcriptional regulator compare
ECD_03897 -1.3 -3.8 glucosephosphate isomerase compare
ECD_02470 -1.3 -3.7 ATP-dependent RNA helicase compare
ECD_04030 -1.2 -1.4 phosphatidylserine decarboxylase compare
ECD_02351 -1.2 -2.5 RmlC-like cupin domain protein compare
ECD_00994 -1.2 -2.0 putative phosphatidylethanolamine synthesis regulator compare
ECD_00807 -1.2 -1.5 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_03590 -1.2 -1.4 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_01225 -1.2 -1.5 putative DGPF domain-containing enzyme compare
ECD_00014 -1.2 -2.5 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01263 -1.2 -3.4 ribonuclease II compare
ECD_04049 -1.2 -1.6 PspA/IM30 family protein compare
ECD_02951 -1.2 -1.4 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_02204 -1.2 -1.0 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_01250 -1.1 -1.9 DNA topoisomerase I, omega subunit compare
ECD_03801 -1.1 -5.6 6-phosphofructokinase I compare
ECD_02058 -1.1 -1.6 putative ABC transporter permease compare
ECD_t00011 -1.1 -1.8 tRNA-Gln compare
ECD_03735 -1.1 -4.4 NAD(P)H-flavin reductase compare
ECD_02254 -1.1 -2.7 chorismate synthase compare
ECD_03040 -1.1 -2.8 preprotein translocase membrane subunit compare
ECD_01435 -1.1 -1.8 putative DNA-binding transcriptional regulator compare
ECD_00585 -1.1 -1.5 citrate lyase, acyl carrier (gamma) subunit compare
ECD_01162 -1.1 -1.6 fatty acid metabolism regulon transcriptional regulator compare
ECD_01928 -1.0 -2.1 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_03556 -1.0 -1.9 ilvB operon leader peptide compare
ECD_03687 -1.0 -1.3 site-specific tyrosine recombinase compare
ECD_00500 -1.0 -1.2 DLP12 prophage; endonuclease RUS compare
ECD_01033 -1.0 -2.5 DUF1097 family inner membrane protein compare
ECD_03645 -1.0 -1.7 ilvG operon leader peptide compare
ECD_03075 -1.0 -2.9 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_03798 -1.0 -1.7 response regulator in two-component regulatory system with CpxA compare
ECD_01775 -1.0 -1.7 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_01721 -0.9 -1.7 TVP38/TMEM64 family inner membrane protein compare
ECD_02825 -0.9 -1.7 Pyrophosphorylase compare
ECD_00811 -0.9 -1.6 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_00540 -0.9 -1.6 DUF419 family protein compare
ECD_01894 -0.9 -1.9 AMP nucleosidase compare
ECD_00185 -0.9 -2.5 putative lyase compare
ECD_02203 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_00333 -0.9 -3.5 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_03746 -0.9 -3.6 periplasmic protein disulfide isomerase I compare
ECD_03132 -0.9 -1.4 dehydroshikimate reductase, NAD(P)-binding compare
ECD_01124 -0.8 -1.6 spermidine/putrescine ABC transporter ATPase compare
ECD_02109 -0.8 -2.5 microcin C ABC transporter permease compare
ECD_00925 -0.8 -1.6 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_00378 -0.8 -1.4 hypothetical protein compare
ECD_02098 -0.8 -2.1 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_00904 -0.8 -1.6 LysR family putative transcriptional regulator compare
ECD_02397 -0.8 -1.8 outer membrane integrity lipoprotein compare
ECD_03031 -0.8 -3.2 polynucleotide phosphorylase/polyadenylase compare
ECD_01218 -0.8 -2.3 oligopeptide ABC transporter permease compare
ECD_01601 -0.8 -1.0 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_00450 -0.8 -1.3 conserved protein, rhs-like protein compare
ECD_03277 -0.8 -3.2 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_00326 -0.8 -1.0 DUF2755 family inner membrane protein compare
ECD_03669 -0.8 -2.2 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_00492 -0.8 -1.0 hypothetical protein compare
ECD_03119 -0.8 -1.1 global DNA-binding transcriptional dual regulator compare
ECD_02128 -0.8 -1.7 heme export ABC transporter ATPase compare
ECD_01084 -0.8 -2.9 DUF177 family protein compare
ECD_02205 -0.8 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_01966 -0.8 -2.1 colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase compare
ECD_01042 -0.8 -1.5 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit compare
ECD_03500 -0.7 -2.7 ribonuclease PH compare
ECD_00792 -0.7 -2.3 fructose-6-phosphate aldolase 1 compare
ECD_00681 -0.7 -1.0 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_02869 -0.7 -2.4 maturation protease for hydrogenase 2 compare
ECD_02132 -0.7 -1.1 ferredoxin-type protein compare
ECD_00870 -0.7 -1.8 lipoprotein compare
ECD_00318 -0.7 -3.0 taurine dioxygenase, 2-oxoglutarate-dependent compare
ECD_02209 -0.7 -1.8 NADH:ubiquinone oxidoreductase, chain F compare
ECD_01655 -0.7 -1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_03611 -0.7 -2.8 phosphate ABC transporter permease compare
ECD_02777 -0.7 -3.0 glutathione synthetase compare
ECD_03508 -0.7 -1.7 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_02081 -0.7 -2.4 DUF418 family putative inner membrane protein compare
ECD_01593 -0.7 -1.1 putative oxidoreductase compare
ECD_01424 -0.7 -1.4 nitrate reductase 2 (NRZ), delta subunit (assembly subunit) compare
ECD_01368 -0.7 -1.7 putative ATP-dependent helicase compare
ECD_01957 -0.7 -0.8 GDP-mannose mannosyl hydrolase compare
ECD_01349 -0.7 -1.7 pyruvate-flavodoxin oxidoreductase compare
ECD_03625 -0.7 -1.7 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_01972 -0.7 -1.9 uridine/cytidine kinase compare
ECD_02272 -0.7 -2.9 ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component compare
ECD_01125 -0.7 -1.7 peptidase T compare
ECD_00752 -0.7 -0.8 molybdopterin synthase, large subunit compare
ECD_01737 -0.7 -1.6 nicotinamidase/pyrazinamidase compare
ECD_01104 -0.7 -0.8 putative UPF0227 family esterase compare
ECD_03036 -0.7 -1.6 transcription termination/antitermination L factor compare
ECD_01897 -0.6 -1.2 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01445 -0.6 -1.4 D,D-dipeptide ABC transporter periplasmic binding protein compare
ECD_04018 -0.6 -0.9 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_02228 -0.6 -2.2 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase compare
ECD_01911 -0.6 -2.1 putative transporter, FUSC family inner membrane protein compare
ECD_00863 -0.6 -1.5 DUF2593 family inner membrane protein compare
ECD_00970 -0.6 -2.2 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01081 -0.6 -1.9 uncharacterized protein compare
ECD_00269 -0.6 -1.7 choline-inducible betIBA-betT divergent operon transcriptional repressor compare
ECD_02212 -0.6 -2.2 NADH:ubiquinone oxidoreductase, chain B compare
ECD_01620 -0.6 -1.5 chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme compare
ECD_02202 -0.6 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_02746 -0.6 -1.3 hypothetical protein compare
ECD_01034 -0.6 -1.0 curli production assembly/transport outer membrane lipoprotein compare
ECD_02201 -0.6 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_01561 -0.6 -1.3 H(+)/Cl(-) exchange transporter compare
ECD_01404 -0.6 -1.3 DUF606 family inner membrane protein compare
ECD_00136 -0.6 -1.3 putative fimbrial-like adhesin protein compare
ECD_03488 -0.6 -1.2 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_00867 -0.6 -1.5 arginine ABC transporter permease compare
ECD_02039 -0.6 -0.9 hypothetical protein compare
ECD_02401 -0.6 -2.1 exonuclease VII, large subunit compare
ECD_00501 -0.6 -1.8 uncharacterized protein, DLP12 prophage compare
ECD_02224 -0.6 -2.0 putative NUDIX hydrolase compare
ECD_03813 -0.6 -1.3 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_r00015 -0.6 -2.5 23S ribosomal RNA compare
ECD_01160 -0.6 -2.1 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_01952 -0.6 -2.2 putative colanic acid exporter compare
ECD_02220 -0.6 -1.0 UPF0208 family inner membrane protein compare
ECD_02064 -0.6 -2.0 D-alanyl-D-alanine endopeptidase compare
ECD_01668 -0.6 -1.2 putative oxidoreductase compare
ECD_01749 -0.6 -0.9 D-hexose-6-phosphate epimerase-like protein compare
ECD_02229 -0.6 -1.9 putative NAD-dependent nucleotide-sugar epimerase compare
ECD_01679 -0.6 -1.2 glutathione peroxidase compare
ECD_03817 -0.6 -1.3 peptidase component of the HslUV protease compare
ECD_03070 -0.6 -2.4 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_02208 -0.6 -2.3 NADH:ubiquinone oxidoreductase, chain G compare
ECD_01305 -0.6 -1.2 S9-like protein non-peptidase family protein compare
ECD_01003 -0.6 -1.7 DnaK co-chaperone; curved DNA-binding protein compare
ECD_02771 -0.6 -2.4 putative inner membrane protein compare
ECD_02305 -0.5 -1.3 DUF1323 family putative DNA-binding protein compare
ECD_03121 -0.5 -0.7 putative membrane protein compare
ECD_02767 -0.5 -2.9 agmatinase compare
ECD_03489 -0.5 -2.9 lipopolysaccharide core biosynthesis protein compare
ECD_00487 -0.5 -0.9 Excisionase compare
ECD_03357 -0.5 -0.7 acid-resistance protein compare
ECD_00420 -0.5 -1.0 adenine phosphoribosyltransferase compare
ECD_02194 -0.5 -1.6 GNAT family putative N-acetyltransferase compare
ECD_00423 -0.5 -1.7 gap repair protein compare
ECD_00018 -0.5 -1.3 sodium-proton antiporter compare
ECD_04137 -0.5 -1.5 hypothetical protein compare
ECD_02729 -0.5 -1.7 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_03612 -0.5 -3.3 phosphate ABC transporter periplasmic binding protein compare
ECD_02276 -0.5 -2.8 D-serine dehydratase compare
ECD_02447 -0.5 -2.4 putative outer membrane protein modulating the QseEF response compare
ECD_03506 -0.5 -1.1 RNA polymerase, omega subunit compare
ECD_01960 -0.5 -1.3 putative acyl transferase compare
ECD_03046 -0.5 -1.5 transcript cleavage factor compare
ECD_01746 -0.5 -1.7 DUF1315 family protein compare
ECD_03530 -0.5 -0.7 hypothetical protein compare
ECD_02907 -0.5 -2.2 transport channel compare
ECD_04165 -0.5 -3.1 putative DNA-binding transcriptional regulator compare
ECD_01064 -0.5 -1.4 putative oxidoreductase compare
ECD_01195 -0.5 -0.6 cation transport regulator compare
ECD_02055 -0.5 -1.6 inner membrane putative sensory kinase in two-component system with YehT compare
ECD_03733 -0.5 -2.9 transcription antitermination protein compare
ECD_01964 -0.5 -1.3 putative acyl transferase compare
ECD_00556 -0.5 -0.7 iron-enterobactin ABC transporter permease compare
ECD_00389 -0.5 -1.8 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00953 -0.5 -1.7 replication regulatory ABC-F family DNA-binding ATPase compare
ECD_02111 -0.5 -1.6 uncharacterized protein compare
ECD_02940 -0.5 -2.3 PadR family putative transcriptional regulator compare
ECD_00469 -0.5 -1.6 hypothetical protein compare
ECD_00612 -0.5 -1.0 DUF1451 family protein compare
ECD_03877 -0.5 -1.1 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_00181 -0.5 -1.7 ribonuclease HII compare
ECD_02206 -0.5 -0.9 NADH:ubiquinone oxidoreductase, chain I compare
ECD_03067 -0.5 -0.6 RNA polymerase, sigma 54 (sigma N) factor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in no phage control experiments