Experiment set9S559 for Escherichia coli BL21

Compare to:

HSDP3

200 most detrimental genes:

  gene name fitness t score description  
ECD_03659 +1.2 1.4 thioredoxin 1 compare
ECD_01230 +1.0 2.4 outer membrane protein W compare
ECD_00956 +0.9 2.1 DUF330 family putative lipoprotein compare
ECD_01954 +0.9 2.2 phosphomannomutase compare
ECD_01221 +0.9 3.1 oligopeptide ABC transporter ATPase compare
ECD_03696 +0.9 1.6 DUF2628 family putative inner membrane protein compare
ECD_02365 +0.8 1.5 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_02163 +0.8 1.9 acid-inducible Kdo/WaaP family putative kinase compare
ECD_00849 +0.8 1.4 putative DNA-invertase compare
ECD_02820 +0.8 1.4 hypothetical protein compare
ECD_02320 +0.7 1.4 WGR domain protein compare
ECD_00651 +0.7 2.4 response regulator in two-component regulatory system with KdpD compare
ECD_03213 +0.7 1.7 putative antitoxin for Fic compare
ECD_01897 +0.7 2.0 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_00540 +0.7 1.3 DUF419 family protein compare
ECD_02377 +0.7 2.1 hydrogenase 4, membrane subunit compare
ECD_01852 +0.7 1.9 chemotaxis regulator, protein phosphatase for CheY compare
ECD_00380 +0.7 1.2 cytochrome o ubiquinol oxidase subunit IV compare
ECD_01167 +0.7 1.3 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_04051 +0.7 1.8 UPF0719 family inner membrane protein compare
ECD_01293 +0.7 3.1 putative family 65 glycosyl hydrolase compare
ECD_01812 +0.7 2.2 CopC family protein compare
ECD_01565 +0.7 0.7 putative arabinose efflux transporter compare
ECD_02238 +0.7 1.3 colicin V production protein compare
ECD_01792 +0.7 2.2 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_01365 +0.7 1.8 putative esterase compare
ECD_00831 +0.6 1.6 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_01586 +0.6 1.0 beta-D-glucuronidase compare
ECD_00623 +0.6 3.6 glutamate/aspartate periplasmic binding protein compare
ECD_02173 +0.6 2.2 L-rhamnonate dehydratase compare
ECD_01879 +0.6 1.2 response regulator in two-component regulatory system with BarA compare
ECD_02840 +0.6 1.2 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_03350 +0.6 1.1 arsenical resistance operon transcriptional repressor; autorepressor compare
ECD_01109 +0.6 1.5 L,D-transpeptidase linking Lpp to murein compare
ECD_00329 +0.6 1.1 anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein compare
ECD_01556 +0.6 1.0 putative selenate reductase, periplasmic compare
ECD_00469 +0.6 3.0 hypothetical protein compare
ECD_01681 +0.6 1.1 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01983 +0.6 1.7 sensory histidine kinase in two-component regulatory system with BaeR compare
ECD_00418 +0.6 2.8 primosomal replication protein N'' compare
ECD_00848 +0.6 1.3 bacteriophage tail fiber protein compare
ECD_00594 +0.6 2.1 fluoride efflux channel, dual topology membrane protein compare
ECD_03022 +0.6 2.6 GIY-YIG nuclease superfamily protein compare
ECD_03217 +0.6 2.2 nitrite reductase (NADH) small subunit compare
ECD_04384 +0.6 2.6 small predicted membrane protein compare
ECD_02233 +0.6 2.8 histidine ABC transporter permease compare
ECD_03798 +0.6 1.6 response regulator in two-component regulatory system with CpxA compare
ECD_02024 +0.6 2.2 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit compare
ECD_03357 +0.6 1.1 acid-resistance protein compare
ECD_02297 +0.6 1.3 putative enzyme IIB component of PTS compare
ECD_01003 +0.6 1.6 DnaK co-chaperone; curved DNA-binding protein compare
ECD_01623 +0.6 2.4 putative ATP-dependent helicase compare
ECD_02915 +0.5 1.5 putative fimbrial-like adhesin protein compare
ECD_04391 +0.5 1.7 hypothetical protein compare
ECD_00420 +0.5 0.6 adenine phosphoribosyltransferase compare
ECD_02286 +0.5 0.9 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_01103 +0.5 1.6 beta N-acetyl-glucosaminidase compare
ECD_01426 +0.5 2.3 nitrate reductase 2 (NRZ), alpha subunit compare
ECD_01529 +0.5 1.2 Qin prophage; uncharacterized protein compare
ECD_03352 +0.5 2.4 arsenate reductase compare
ECD_04346 +0.5 1.2 hypothetical protein compare
ECD_02028 +0.5 1.5 putative kinase compare
ECD_00188 +0.5 2.1 UPF0253 family protein compare
ECD_00230 +0.5 1.3 hypothetical protein compare
ECD_01479 +0.5 1.2 putative membrane-bound diguanylate cyclase compare
ECD_00859 +0.5 1.8 putrescine ABC transporter periplasmic binding protein compare
ECD_00677 +0.5 1.7 putative periplasmic pilin chaperone compare
ECD_01621 +0.5 0.7 glyoxalase I, Ni-dependent compare
ECD_01375 +0.5 1.2 putative periplasmic protein compare
ECD_01700 +0.5 1.1 cell division modulator compare
ECD_02998 +0.5 1.6 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02162 +0.5 0.9 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_00818 +0.5 1.5 hypothetical protein compare
ECD_01882 +0.5 2.4 glyoxalase III and Hsp31 molecular chaperone compare
ECD_00455 +0.5 1.5 ureidoglycolate lyase, releasing urea compare
ECD_01779 +0.5 1.3 putative reactive intermediate deaminase compare
ECD_02670 +0.5 1.7 exonuclease V (RecBCD complex), gamma chain compare
ECD_00843 +0.5 1.6 phage baseplate assembly protein compare
ECD_01472 +0.5 1.4 autoinducer 2 import system permease protein compare
ECD_01148 +0.5 1.7 hypothetical protein compare
ECD_00777 +0.5 2.6 glutamine transporter subunit compare
ECD_01865 +0.5 1.8 trehalose-6-phosphate synthase compare
ECD_01732 +0.5 1.9 DNA topoisomerase III compare
ECD_00434 +0.5 0.9 putative DNA-binding transcriptional regulator compare
ECD_00407 +0.5 0.9 DUF1428 family protein compare
ECD_01022 +0.4 1.0 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_02258 +0.4 1.3 putative fimbrial-like adhesin protein compare
ECD_03997 +0.4 1.6 putative 4Fe-4S mono-cluster protein compare
ECD_00252 +0.4 1.3 ECP pilin compare
ECD_01349 +0.4 1.5 pyruvate-flavodoxin oxidoreductase compare
ECD_01752 +0.4 1.3 protein kinase, endogenous substrate unidentified; autokinase compare
ECD_00658 +0.4 1.3 Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor compare
ECD_02397 +0.4 1.3 outer membrane integrity lipoprotein compare
ECD_00622 +0.4 2.5 glutamate/aspartate ABC transporter permease compare
ECD_01274 +0.4 2.0 glutamate--putrescine ligase compare
ECD_04030 +0.4 0.8 phosphatidylserine decarboxylase compare
ECD_01399 +0.4 1.2 putative ABC transporter permease compare
ECD_00985 +0.4 1.3 O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase compare
ECD_00453 +0.4 1.7 tRNA 2-selenouridine synthase, selenophosphate-dependent compare
ECD_03220 +0.4 1.3 small lipoprotein compare
ECD_02042 +0.4 1.0 DUF2574 family protein compare
ECD_02192 +0.4 1.0 isochorismate synthase 2 compare
ECD_00782 +0.4 2.1 OPG biosynthetic transmembrane phosphoethanolamine transferase compare
ECD_01921 +0.4 1.3 ATP phosphoribosyltransferase compare
ECD_03262 +0.4 1.9 putative DNA-binding transcriptional regulator compare
ECD_01403 +0.4 1.4 DUF2526 family protein compare
ECD_00982 +0.4 1.1 cytochrome bd-II oxidase, subunit II compare
ECD_00774 +0.4 1.2 23S rRNA m(6)A1618 methyltransferase, SAM-dependent compare
ECD_00936 +0.4 2.2 aminopeptidase N compare
ECD_00900 +0.4 1.2 dimethyl sulfoxide reductase, anaerobic, subunit C compare
ECD_02070 +0.4 0.8 UPF0299 family inner membrane protein compare
ECD_02188 +0.4 1.5 O-succinylbenzoyl-CoA synthase compare
ECD_03902 +0.4 1.7 phosphate starvation inducible protein compare
ECD_01379 +0.4 1.1 putative DNA-binding transcriptional regulator compare
ECD_00803 +0.4 1.0 repressor of biofilm formation by indole transport regulation compare
ECD_01068 +0.4 1.8 assembly protein for flagellar basal-body periplasmic P ring compare
ECD_00558 +0.4 2.2 enterobactin exporter, iron-regulated compare
ECD_02308 +0.4 1.8 transcriptional regulator of yefH compare
ECD_00988 +0.4 1.6 putative O-antigen capsule production periplasmic protein compare
ECD_02582 +0.4 1.6 uncharacterized protein compare
ECD_02167 +0.4 1.6 anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit compare
ECD_01869 +0.4 1.7 L-arabinose ABC transporter periplasmic binding protein compare
ECD_01015 +0.4 1.4 pyrimidine oxygenase, FMN-dependent compare
ECD_00929 +0.4 1.4 murein L,D-transpeptidase compare
ECD_01830 +0.4 1.3 zinc ABC transporter permease compare
ECD_02984 +0.4 1.3 L-threonine dehydratase, catabolic compare
ECD_04145 +0.4 1.8 IS911 protein compare
ECD_01912 +0.4 1.3 DNA gyrase inhibitor compare
ECD_03561 +0.4 1.6 inner membrane protein compare
ECD_02189 +0.4 0.8 dihydroxynaphthoic acid synthetase compare
ECD_00881 +0.4 1.4 putative OLD family ATP-dependent endonuclease; DUF2813 family protein compare
ECD_04142 +0.4 1.4 GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent compare
ECD_02257 +0.4 1.8 DUF2544 family putative outer membrane protein compare
ECD_01189 +0.4 1.4 transglutaminase-like TPR-repeat protein compare
ECD_04116 +0.4 1.9 c-di-GMP-binding biofilm dispersal mediator protein compare
ECD_01606 +0.4 0.6 pyridoxamine kinase compare
ECD_01876 +0.4 1.0 UPF0149 family protein compare
ECD_01486 +0.4 0.9 UPF0056 family inner membrane protein compare
ECD_00439 +0.4 1.0 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX compare
ECD_01656 +0.4 1.3 putative FAD-linked oxidoreductase compare
ECD_01918 +0.4 1.5 LysR family putative transcriptional regulator compare
ECD_00513 +0.4 1.8 hypothetical protein compare
ECD_01300 +0.4 1.1 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_00646 +0.4 1.2 lipoprotein compare
ECD_00860 +0.4 2.2 putrescine ABC transporter ATPase compare
ECD_02310 +0.4 0.8 DUF3820 family protein compare
ECD_03132 +0.4 0.6 dehydroshikimate reductase, NAD(P)-binding compare
ECD_02036 +0.4 0.7 hypothetical protein compare
ECD_04388 +0.4 1.2 putative membrane-bound BasS regulator compare
ECD_02198 +0.4 1.6 DUF1877 family protein compare
ECD_02423 +0.4 1.6 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_01970 +0.4 1.4 suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein compare
ECD_00857 +0.4 1.5 ribosomal protein S6 modification protein compare
ECD_01666 +0.4 0.7 putative electron transfer flavoprotein subunit compare
ECD_01313 +0.4 1.3 p-aminobenzoyl-glutamate transporter; membrane protein compare
ECD_03187 +0.4 1.8 bacterioferritin, iron storage and detoxification protein compare
ECD_00854 +0.4 1.2 glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) compare
ECD_02340 +0.4 2.2 ethanolamine ammonia-lyase, small subunit (light chain) compare
ECD_01488 +0.4 0.5 putative phage protein compare
ECD_01557 +0.4 1.0 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_00984 +0.3 1.6 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_00951 +0.3 1.3 6-N-hydroxylaminopurine detoxification oxidoreductase compare
ECD_02474 +0.3 1.7 uracil-DNA-glycosylase compare
ECD_02153 +0.3 1.8 tandem DUF2300 domain protein, putative host defense protein compare
ECD_00342 +0.3 1.5 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_01572 +0.3 1.2 pyridine nucleotide transhydrogenase, alpha subunit compare
ECD_01977 +0.3 0.9 ser/thr phosphatase-related protein compare
ECD_01174 +0.3 0.7 dihydroxyacetone kinase, C-terminal domain compare
ECD_01898 +0.3 0.7 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_00406 +0.3 0.7 excision repair protein, alkyltransferase-like protein ATL compare
ECD_04045 +0.3 1.4 nitric oxide-sensitive repressor for NO regulon compare
ECD_01575 +0.3 0.9 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_01703 +0.3 0.8 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_00863 +0.3 1.3 DUF2593 family inner membrane protein compare
ECD_02170 +0.3 1.6 transposase_31 family protein compare
ECD_03433 +0.3 1.9 3-keto-L-gulonate 6-phosphate decarboxylase compare
ECD_01314 +0.3 1.0 p-aminobenzoyl-glutamate hydrolase, B subunit compare
ECD_01590 +0.3 1.5 maltose and glucose-specific PTS enzyme IIB component and IIC component compare
ECD_02321 +0.3 0.9 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_01706 +0.3 0.6 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_03576 +0.3 1.1 2-oxo-3-deoxygalactonate 6-phosphate aldolase compare
ECD_02048 +0.3 1.1 putative hexameric AAA+ MoxR family ATPase compare
ECD_02061 +0.3 0.9 putative ABC transporter periplasmic binding protein compare
ECD_01301 +0.3 0.4 lipid hydroperoxide peroxidase compare
ECD_01279 +0.3 1.3 4-aminobutyrate aminotransferase, PLP-dependent compare
ECD_00238 +0.3 1.7 outer membrane phosphoporin protein E compare
ECD_01863 +0.3 0.6 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_03205 +0.3 1.0 UPF0270 family protein compare
ECD_00896 +0.3 1.0 recombination intermediate processing DNA-dependent ATPase compare
ECD_00748 +0.3 0.9 molybdopterin biosynthesis protein A compare
ECD_02071 +0.3 1.3 LrgB family inner membrane protein compare
ECD_01652 +0.3 1.3 component of SufBCD complex compare
ECD_03073 +0.3 1.7 biosynthetic peptidoglycan transglycosylase compare
ECD_04198 +0.3 1.3 SpmB family inner membrane protein compare
ECD_01926 +0.3 1.0 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase compare
ECD_00939 +0.3 1.1 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_03653 +0.3 1.0 peptidyl-prolyl cis-trans isomerase C (rotamase C) compare
ECD_00850 +0.3 1.1 putative regulator of late gene expression compare
ECD_02732 +0.3 0.7 UPF0267 family protein compare
ECD_00864 +0.3 1.0 23S rRNA m(5)U747 methyltransferase, SAM-dependent compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms