Experiment set9S542 for Escherichia coli BL21

Compare to:

Bas33

200 most important genes:

  gene name fitness t score description  
ECD_03692 -3.0 -7.8 magnesium/nickel/cobalt transporter compare
ECD_03797 -2.6 -5.6 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_00933 -2.4 -4.2 outer membrane porin 1a (Ia compare
ECD_03119 -2.2 -1.9 global DNA-binding transcriptional dual regulator compare
ECD_03590 -2.2 -1.5 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03238 -2.1 -3.7 D-ribulose-5-phosphate 3-epimerase compare
ECD_02507 -2.0 -1.3 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02765 -1.9 -4.3 transketolase 1, thiamine triphosphate-binding compare
ECD_02463 -1.9 -4.1 back-translocating elongation factor EF4, GTPase compare
ECD_02204 -1.9 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_04070 -1.9 -2.8 50S ribosomal subunit protein L9 compare
ECD_02549 -1.9 -7.8 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03037 -1.7 -2.8 ribosome maturation factor for 30S subunits compare
ECD_03731 -1.7 -2.8 TatABCE protein translocation system subunit compare
ECD_01162 -1.6 -2.4 fatty acid metabolism regulon transcriptional regulator compare
ECD_02351 -1.6 -2.8 RmlC-like cupin domain protein compare
ECD_04107 -1.6 -1.5 trehalose-6-P hydrolase compare
ECD_02826 -1.5 -1.6 hypothetical protein compare
ECD_04119 -1.5 -1.6 SopA-central-domain-like hexapeptide repeat protein compare
ECD_04024 -1.5 -1.9 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_03017 -1.5 -1.9 outer membrane lipoprotein compare
ECD_00634 -1.5 -2.5 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_01906 -1.5 -2.0 hypothetical protein compare
ECD_04051 -1.4 -2.3 UPF0719 family inner membrane protein compare
ECD_04038 -1.4 -1.5 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00053 -1.4 -2.8 diadenosine tetraphosphatase compare
ECD_02832 -1.4 -1.4 putative type II secretion protein GspJ compare
ECD_01080 -1.3 -4.1 endoribonuclease; RNA-binding protein compare
ECD_00925 -1.3 -1.5 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_00018 -1.3 -2.7 sodium-proton antiporter compare
ECD_03625 -1.3 -2.4 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02209 -1.3 -3.4 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02210 -1.2 -2.6 NADH:ubiquinone oxidoreductase, chain E compare
ECD_01172 -1.2 -1.4 periplasmic trehalase compare
ECD_03242 -1.2 -1.6 shikimate kinase I compare
ECD_01250 -1.2 -2.1 DNA topoisomerase I, omega subunit compare
ECD_00843 -1.2 -2.7 phage baseplate assembly protein compare
ECD_03897 -1.2 -3.6 glucosephosphate isomerase compare
ECD_02470 -1.2 -3.9 ATP-dependent RNA helicase compare
ECD_01011 -1.2 -1.7 putative malonic semialdehyde reductase compare
ECD_01084 -1.2 -4.0 DUF177 family protein compare
ECD_00142 -1.2 -3.8 poly(A) polymerase compare
ECD_01234 -1.2 -1.2 tryptophan synthase, alpha subunit compare
ECD_03425 -1.1 -1.3 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_03818 -1.1 -1.7 essential cell division protein compare
ECD_t00011 -1.1 -1.9 tRNA-Gln compare
ECD_01814 -1.1 -2.0 C-N hydrolase family protein compare
ECD_03144 -1.0 -1.1 DUF1992 family protein compare
ECD_01957 -1.0 -1.6 GDP-mannose mannosyl hydrolase compare
ECD_03067 -1.0 -1.4 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_02726 -1.0 -2.6 site-specific tyrosine recombinase compare
ECD_t00059 -1.0 -1.3 tRNA-Thr compare
ECD_03798 -0.9 -1.8 response regulator in two-component regulatory system with CpxA compare
ECD_01424 -0.9 -1.8 nitrate reductase 2 (NRZ), delta subunit (assembly subunit) compare
ECD_01763 -0.9 -1.5 diguanylate cyclase compare
ECD_02130 -0.9 -1.9 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_01105 -0.9 -3.4 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_03132 -0.9 -1.8 dehydroshikimate reductase, NAD(P)-binding compare
ECD_03801 -0.9 -4.6 6-phosphofructokinase I compare
ECD_02208 -0.9 -3.8 NADH:ubiquinone oxidoreductase, chain G compare
ECD_02202 -0.9 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_03571 -0.9 -1.0 DUF1375 family outer membrane protein compare
ECD_00434 -0.9 -1.3 putative DNA-binding transcriptional regulator compare
ECD_01263 -0.9 -3.0 ribonuclease II compare
ECD_01248 -0.9 -2.5 inner membrane protein, S49 peptidase family protein compare
ECD_02239 -0.9 -1.3 membrane-anchored periplasmic protein involved in septation compare
ECD_03556 -0.9 -1.8 ilvB operon leader peptide compare
ECD_03277 -0.8 -3.4 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_02287 -0.8 -2.1 DUF2545 family putative inner membrane protein compare
ECD_01160 -0.8 -2.5 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_00333 -0.8 -2.9 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_04041 -0.8 -1.5 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_04019 -0.8 -1.8 entericidin B membrane lipoprotein compare
ECD_01245 -0.8 -2.2 23S rRNA pseudouridine(2605) synthase compare
ECD_03488 -0.8 -1.6 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03266 -0.8 -3.6 Fe/S biogenesis protein, putative scaffold/chaperone protein compare
ECD_00165 -0.8 -2.4 uridylyltransferase compare
ECD_04373 -0.8 -2.0 UV-inducible membrane toxin, DinQ-AgrB type I toxin-antitoxin system compare
ECD_00014 -0.8 -1.9 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01067 -0.8 -1.4 anti-sigma factor for FliA (sigma 28) compare
ECD_00978 -0.8 -2.4 hydrogenase 1 maturation protease compare
ECD_00960 -0.8 -1.4 Ter macrodomain organizer matS-binding protein compare
ECD_00442 -0.8 -1.2 iron export ABC transporter permease; peroxide resistance protein compare
ECD_02201 -0.7 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_03093 -0.7 -1.5 DUF1043 family inner membrane-anchored protein compare
ECD_02732 -0.7 -1.5 UPF0267 family protein compare
ECD_02909 -0.7 -1.9 DUF1190 family protein compare
ECD_03353 -0.7 -2.0 hypothetical protein compare
ECD_01434 -0.7 -0.9 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_01122 -0.7 -1.3 spermidine/putrescine ABC transporter permease compare
ECD_01478 -0.7 -1.5 altronate oxidoreductase, NAD-dependent compare
ECD_02098 -0.7 -2.0 fused fructose-specific PTS enzymes: IIA component/HPr component compare
ECD_03031 -0.7 -3.0 polynucleotide phosphorylase/polyadenylase compare
ECD_02628 -0.7 -2.1 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_00612 -0.7 -1.5 DUF1451 family protein compare
ECD_t00083 -0.7 -0.8 tRNA-Leu compare
ECD_02203 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_00423 -0.7 -2.5 gap repair protein compare
ECD_04133 -0.7 -3.6 L-idonate 5-dehydrogenase, NAD-binding compare
ECD_01772 -0.7 -1.7 putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster compare
ECD_02416 -0.7 -1.4 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_03813 -0.7 -1.6 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_03998 -0.7 -1.3 GNAT family putative N-acetyltransferase compare
ECD_02331 -0.7 -1.7 porphyrinogen oxidase, cytoplasmic compare
ECD_01498 -0.7 -1.2 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_00271 -0.7 -2.9 c-di-GMP-specific phosphodiesterase compare
ECD_03308 -0.6 -1.3 PanD autocleavage accelerator, panothenate synthesis compare
ECD_00552 -0.6 -1.2 stimulator of EntF adenylation activity, MbtH-like compare
ECD_00889 -0.6 -0.9 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_03612 -0.6 -3.6 phosphate ABC transporter periplasmic binding protein compare
ECD_04134 -0.6 -2.2 D-gluconate kinase, thermosensitive compare
ECD_02301 -0.6 -1.9 manganese/divalent cation transporter compare
ECD_00464 -0.6 -1.3 glycerate kinase II compare
ECD_01125 -0.6 -1.8 peptidase T compare
ECD_03729 -0.6 -1.4 TatABCE protein translocation system subunit compare
ECD_03005 -0.6 -1.1 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_03507 -0.6 -1.7 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_02076 -0.6 -0.7 dihydropyrimidine dehydrogenase, NADH-dependent, subunit C compare
ECD_03756 -0.6 -3.8 GTP-binding protein compare
ECD_00001 -0.6 -2.0 thr operon leader peptide compare
ECD_02066 -0.6 -2.0 DedA family inner membrane protein compare
ECD_01703 -0.6 -1.9 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare
ECD_03143 -0.6 -2.2 zntA gene transcriptional activator compare
ECD_02907 -0.6 -2.5 transport channel compare
ECD_00793 -0.6 -1.4 molybdopterin synthase sulfurylase compare
ECD_00883 -0.6 -2.2 macrolide transporter membrane fusion protein (MFP) component compare
ECD_01928 -0.6 -1.3 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_r00015 -0.6 -2.1 23S ribosomal RNA compare
ECD_02254 -0.6 -0.9 chorismate synthase compare
ECD_00635 -0.6 -2.2 glucosamine-6-phosphate deaminase compare
ECD_01352 -0.6 -1.9 fermentative D-lactate dehydrogenase, NAD-dependent compare
ECD_00130 -0.6 -1.4 aspartate 1-decarboxylase compare
ECD_02132 -0.6 -1.4 ferredoxin-type protein compare
ECD_00660 -0.6 -1.8 conserved protein, rhs-like protein compare
ECD_00633 -0.6 -1.8 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_01946 -0.6 -1.1 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_t00054 -0.6 -1.9 tRNA-Gly compare
ECD_02792 -0.6 -1.3 oxidative damage protective factor for iron-sulfur proteins compare
ECD_03774 -0.6 -1.6 CopG family putative transcriptional regulator compare
ECD_02767 -0.6 -2.5 agmatinase compare
ECD_02484 -0.6 -2.7 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_02302 -0.6 -2.0 nucleoside (except guanosine) transporter compare
ECD_02840 -0.6 -0.8 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_01737 -0.6 -1.3 nicotinamidase/pyrazinamidase compare
ECD_00081 -0.5 -1.9 transcriptional repressor-activator for carbon metabolism compare
ECD_00904 -0.5 -1.2 LysR family putative transcriptional regulator compare
ECD_00028 -0.5 -2.5 uncharacterized protein compare
ECD_01582 -0.5 -1.0 mannose-6-phosphate isomerase compare
ECD_00015 -0.5 -2.0 chaperone Hsp40, DnaK co-chaperone compare
ECD_01803 -0.5 -2.3 free methionine-(R)-sulfoxide reductase compare
ECD_03611 -0.5 -1.7 phosphate ABC transporter permease compare
ECD_01668 -0.5 -1.3 putative oxidoreductase compare
ECD_03256 -0.5 -2.1 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_02220 -0.5 -0.9 UPF0208 family inner membrane protein compare
ECD_03509 -0.5 -2.2 ATP-dependent DNA helicase compare
ECD_03534 -0.5 -1.2 hypothetical protein compare
ECD_00867 -0.5 -1.4 arginine ABC transporter permease compare
ECD_01445 -0.5 -1.0 D,D-dipeptide ABC transporter periplasmic binding protein compare
ECD_00120 -0.5 -3.0 spermidine synthase (putrescine aminopropyltransferase) compare
ECD_01859 -0.5 -1.7 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein compare
ECD_01655 -0.5 -1.3 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_02940 -0.5 -2.0 PadR family putative transcriptional regulator compare
ECD_02097 -0.5 -1.6 fructose-1-phosphate kinase compare
ECD_03405 -0.5 -2.0 HTH_CROC1 family putative transcriptional regulator compare
ECD_03022 -0.5 -1.6 GIY-YIG nuclease superfamily protein compare
ECD_01486 -0.5 -0.9 UPF0056 family inner membrane protein compare
ECD_02207 -0.5 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_03056 -0.5 -1.9 ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component compare
ECD_02058 -0.5 -1.1 putative ABC transporter permease compare
ECD_02996 -0.5 -2.2 transcriptional repressor of the aga regulon compare
ECD_01818 -0.5 -0.8 extracellular Colicin M immunity family protein compare
ECD_00670 -0.5 -1.7 NIF3 family metal-binding protein compare
ECD_04102 -0.5 -2.1 ribosome-associated UPF0307 family protein compare
ECD_00682 -0.5 -1.0 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03040 -0.5 -0.9 preprotein translocase membrane subunit compare
ECD_01629 -0.5 -0.8 transcriptional repressor, hypoxanthine-binding compare
ECD_03547 -0.5 -1.4 DUF1198 family protein compare
ECD_03554 -0.5 -2.5 acetolactate synthase 1 small subunit compare
ECD_04045 -0.5 -1.4 nitric oxide-sensitive repressor for NO regulon compare
ECD_02212 -0.5 -1.9 NADH:ubiquinone oxidoreductase, chain B compare
ECD_01907 -0.5 -1.9 hypothetical protein compare
ECD_03075 -0.5 -1.7 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_00257 -0.5 -1.1 putative DNA-binding transcriptional regulator compare
ECD_00579 -0.5 -2.5 ribonuclease I compare
ECD_02459 -0.5 -1.2 gap repair protein compare
ECD_00994 -0.5 -1.1 putative phosphatidylethanolamine synthesis regulator compare
ECD_01964 -0.5 -0.8 putative acyl transferase compare
ECD_00861 -0.5 -2.0 putrescine ABC transporter permease compare
ECD_01353 -0.5 -1.2 putative membrane-anchored protein, function unknown compare
ECD_00949 -0.5 -0.7 dihydro-orotate oxidase, FMN-linked compare
ECD_00954 -0.5 -1.4 paraquat-inducible, SoxRS-regulated inner membrane protein compare
ECD_03500 -0.5 -2.3 ribonuclease PH compare
ECD_02168 -0.5 -2.0 anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit compare
ECD_01258 -0.5 -1.0 orotidine-5'-phosphate decarboxylase compare
ECD_01063 -0.5 -1.3 UPF0502 family protein compare
ECD_01435 -0.5 -1.0 putative DNA-binding transcriptional regulator compare
ECD_00802 -0.5 -1.1 ribosomal protein S12 methylthiotransferase compare
ECD_02136 -0.5 -1.7 ecotin, a serine protease inhibitor compare
ECD_00436 -0.5 -3.1 glutaminase 1 compare
ECD_01481 -0.5 -1.4 glutaminase 2 compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms