Experiment set9S537 for Escherichia coli BL21

Compare to:

Ox4

200 most important genes:

  gene name fitness t score description  
ECD_00781 -5.8 -6.7 outer membrane protein X compare
ECD_03848 -5.4 -9.5 transcriptional repressor of fabA and fabB compare
ECD_03840 -4.9 -22.9 LPS heptose I phosphoethanolamine transferase compare
ECD_03818 -4.7 -3.3 essential cell division protein compare
ECD_00392 -4.6 -6.9 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_02162 -4.5 -1.6 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_02889 -4.4 -6.7 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_03797 -4.3 -3.0 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_t00083 -4.3 -2.2 tRNA-Leu compare
ECD_00142 -3.9 -3.8 poly(A) polymerase compare
ECD_02423 -3.8 -4.0 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_01774 -3.6 -1.7 ribonuclease D compare
ECD_01629 -3.4 -1.7 transcriptional repressor, hypoxanthine-binding compare
ECD_00896 -3.4 -4.6 recombination intermediate processing DNA-dependent ATPase compare
ECD_01681 -3.3 -2.1 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_02335 -3.3 -4.5 N-acetylmuramoyl-l-alanine amidase I compare
ECD_03256 -3.3 -3.9 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_02826 -3.2 -1.6 hypothetical protein compare
ECD_03731 -3.2 -4.4 TatABCE protein translocation system subunit compare
ECD_00633 -3.2 -4.3 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_00053 -3.0 -2.1 diadenosine tetraphosphatase compare
ECD_03257 -2.9 -2.0 response regulator in two-component regulatory system with EnvZ compare
ECD_02302 -2.8 -6.5 nucleoside (except guanosine) transporter compare
ECD_02765 -2.7 -4.1 transketolase 1, thiamine triphosphate-binding compare
ECD_01565 -2.7 -1.7 putative arabinose efflux transporter compare
ECD_02393 -2.6 -3.8 polyphosphate kinase, component of RNA degradosome compare
ECD_r00015 -2.5 -5.6 23S ribosomal RNA compare
ECD_00081 -2.5 -4.7 transcriptional repressor-activator for carbon metabolism compare
ECD_01802 -2.5 -7.2 RNA chaperone, putative ProP translation regulator compare
ECD_03752 -2.4 -9.4 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_t00019 -2.4 -1.2 tRNA-Lys compare
ECD_00342 -2.4 -4.9 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_03238 -2.3 -3.1 D-ribulose-5-phosphate 3-epimerase compare
ECD_03687 -2.3 -1.5 site-specific tyrosine recombinase compare
ECD_00626 -2.3 -4.4 putative ion transport compare
ECD_02548 -2.2 -3.6 regulatory protein for RecA compare
ECD_01084 -2.2 -5.1 DUF177 family protein compare
ECD_02694 -2.2 -1.5 putative LuxR family transcriptional regulator compare
ECD_00933 -2.1 -2.9 outer membrane porin 1a (Ia compare
ECD_00786 -2.1 -5.6 L,D-transpeptidase linking Lpp to murein compare
ECD_01444 -2.1 -1.7 D,D-dipeptide ABC transporter permease compare
ECD_01107 -2.1 -3.1 repressor for bhsA(ycfR) compare
ECD_00434 -2.0 -1.3 putative DNA-binding transcriptional regulator compare
ECD_03817 -2.0 -3.8 peptidase component of the HslUV protease compare
ECD_03119 -2.0 -1.7 global DNA-binding transcriptional dual regulator compare
ECD_01124 -2.0 -1.5 spermidine/putrescine ABC transporter ATPase compare
ECD_02097 -1.9 -3.2 fructose-1-phosphate kinase compare
ECD_03016 -1.9 -4.1 DnaA initiator-associating factor for replication initiation compare
ECD_02465 -1.9 -9.1 anti-sigma E factor, binds RseA compare
ECD_03005 -1.9 -2.4 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01928 -1.9 -2.1 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_01014 -1.9 -2.0 ureidoacrylate amidohydrolase compare
ECD_00354 -1.9 -4.6 tRNA-guanine transglycosylase compare
ECD_00006 -1.9 -4.5 peroxide resistance protein, lowers intracellular iron compare
ECD_00634 -1.9 -2.2 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_00018 -1.8 -2.9 sodium-proton antiporter compare
ECD_01211 -1.8 -3.7 PcnB-degradosome interaction factor; response regulator compare
ECD_00442 -1.8 -1.3 iron export ABC transporter permease; peroxide resistance protein compare
ECD_03729 -1.7 -1.7 TatABCE protein translocation system subunit compare
ECD_03134 -1.7 -6.3 ssDNA-binding protein, function unknown compare
ECD_02557 -1.7 -8.0 sorbitol-inducible srl operon transcriptional repressor compare
ECD_02907 -1.7 -4.5 transport channel compare
ECD_02459 -1.6 -2.4 gap repair protein compare
ECD_03105 -1.6 -10.9 DUF3971-AsmA2 domains protein conserved
ECD_04265 -1.6 -5.0 DNA repair protein compare
ECD_00423 -1.6 -3.9 gap repair protein compare
ECD_01122 -1.6 -1.8 spermidine/putrescine ABC transporter permease compare
ECD_03040 -1.6 -2.2 preprotein translocase membrane subunit compare
ECD_03816 -1.6 -2.1 molecular chaperone and ATPase component of HslUV protease compare
ECD_04259 -1.5 -4.0 phosphopentomutase compare
ECD_03590 -1.5 -1.0 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_04121 -1.5 -2.8 protein inhibitor of RNase E compare
ECD_00450 -1.5 -1.1 conserved protein, rhs-like protein compare
ECD_02401 -1.5 -2.7 exonuclease VII, large subunit compare
ECD_03846 -1.5 -7.3 oxidative and nitrosative stress transcriptional regulator compare
ECD_01039 -1.4 -1.4 curlin subunit, amyloid curli fibers, cryptic compare
ECD_01915 -1.4 -2.0 putative TusA family sulfurtransferase compare
ECD_00438 -1.4 -1.0 copper-responsive regulon transcriptional regulator compare
ECD_02858 -1.4 -5.2 hypothetical protein compare
ECD_00753 -1.4 -2.8 putative acetate transporter; BAX Inhibitor-1 family inner membrane protein compare
ECD_01886 -1.4 -2.1 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_00574 -1.4 -3.0 alkyl hydroperoxide reductase, C22 subunit compare
ECD_03659 -1.4 -0.9 thioredoxin 1 compare
ECD_00338 -1.3 -3.3 UPF0345 family protein compare
ECD_03031 -1.3 -4.9 polynucleotide phosphorylase/polyadenylase compare
ECD_03086 -1.3 -2.9 sialic acid-inducible nan operon repressor compare
ECD_02825 -1.3 -1.8 Pyrophosphorylase compare
ECD_02039 -1.3 -1.0 hypothetical protein compare
ECD_01793 -1.3 -2.7 stress protein, member of the CspA-family compare
ECD_01624 -1.3 -1.3 glutaredoxin-4 compare
ECD_00963 -1.3 -3.4 CRP-S-dependent promoter expression factor compare
ECD_t00077 -1.3 -0.8 tRNA-Thr compare
ECD_03624 -1.3 -6.1 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein compare
ECD_10005 -1.3 -1.4 Excisionase compare
ECD_00792 -1.3 -2.6 fructose-6-phosphate aldolase 1 compare
ECD_02116 -1.3 -3.5 spermidine nucleoid-associated protein compare
ECD_00882 -1.2 -4.2 DUF535 family protein compare
ECD_04193 -1.2 -1.3 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_00950 -1.2 -1.2 FtsZ stabilizer compare
ECD_00947 -1.2 -3.1 putative fimbrial-like adhesin protein compare
ECD_04260 -1.2 -3.5 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_03625 -1.2 -0.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_01498 -1.2 -1.3 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_03036 -1.2 -2.3 transcription termination/antitermination L factor compare
ECD_00417 -1.2 -3.0 DUF2496 family protein compare
ECD_03509 -1.2 -3.6 ATP-dependent DNA helicase compare
ECD_01053 -1.2 -1.6 putative cytochrome b561 compare
ECD_02814 -1.2 -3.2 hypothetical protein compare
ECD_02549 -1.1 -4.9 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02405 -1.1 -2.5 ancillary SecYEG translocon subunit; putative anti-RcsB factor compare
ECD_02989 -1.1 -4.2 glycerate kinase I compare
ECD_03660 -1.1 -1.0 rho operon leader peptide compare
ECD_00393 -1.1 -2.3 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_02331 -1.1 -2.2 porphyrinogen oxidase, cytoplasmic compare
ECD_01794 -1.1 -3.8 DUF2527 family heat-induced protein compare
ECD_02034 -1.1 -1.3 hypothetical protein compare
ECD_02996 -1.1 -4.0 transcriptional repressor of the aga regulon compare
ECD_02659 -1.1 -2.7 glycine cleavage system transcriptional activator; autorepressor compare
ECD_01800 -1.1 -0.9 putative endopeptidase compare
ECD_00130 -1.1 -3.0 aspartate 1-decarboxylase compare
ECD_02898 -1.1 -4.5 quorum sensing sensory histidine kinase in two-component regulatory system with QseB compare
ECD_02736 -1.1 -2.1 glycine cleavage complex lipoylprotein compare
ECD_01080 -1.1 -2.1 endoribonuclease; RNA-binding protein compare
ECD_02869 -1.1 -2.7 maturation protease for hydrogenase 2 compare
ECD_03063 -1.1 -2.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
ECD_02811 -1.1 -4.5 hypothetical protein compare
ECD_02244 -1.1 -2.5 putative semialdehyde dehydrogenase compare
ECD_00509 -1.1 -1.7 DLP12 prophage; putative lipoprotein compare
ECD_02681 -1.1 -3.5 DUF903 family verified lipoprotein compare
ECD_00725 -1.0 -5.4 acyl-CoA thioesterase, lipoprotein conserved
ECD_02726 -1.0 -2.9 site-specific tyrosine recombinase compare
ECD_02857 -1.0 -0.9 hypothetical protein compare
ECD_00402 -1.0 -1.3 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_03999 -1.0 -1.0 antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA compare
ECD_00614 -1.0 -2.2 uncharacterized protein compare
ECD_00683 -1.0 -2.4 succinate dehydrogenase, flavoprotein subunit compare
ECD_00109 -1.0 -4.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_03001 -1.0 -1.4 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component) compare
ECD_02456 -1.0 -1.2 putative 4Fe-4S cluster-containing protein compare
ECD_01803 -1.0 -3.0 free methionine-(R)-sulfoxide reductase compare
ECD_01716 -1.0 -1.2 arginine succinyltransferase compare
ECD_02951 -1.0 -0.9 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_00405 -1.0 -1.7 outer membrane lipoprotein compare
ECD_04293 -1.0 -1.3 inhibitor of glucose uptake compare
ECD_01425 -0.9 -2.1 nitrate reductase 2 (NRZ), beta subunit compare
ECD_00938 -0.9 -1.9 aliphatic sulfonate ABC transporter permease compare
ECD_00682 -0.9 -2.2 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01589 -0.9 -0.8 transcriptional repressor of Mal regulon compare
ECD_03557 -0.9 -5.2 multidrug efflux system protein compare
ECD_02661 -0.9 -3.1 cysteine sulfinate desulfinase compare
ECD_00969 -0.9 -1.2 putative CoA-binding protein compare
ECD_01863 -0.9 -0.8 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_03583 -0.9 -5.3 gap repair protein compare
ECD_03098 -0.9 -1.1 cadmium and peroxide resistance protein, stress-induced compare
ECD_00501 -0.9 -1.5 uncharacterized protein, DLP12 prophage compare
ECD_01719 -0.9 -1.5 TVP38/TMEM64 family inner membrane protein compare
ECD_01167 -0.9 -0.9 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_04354 -0.9 -2.8 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor compare
ECD_01763 -0.9 -1.1 diguanylate cyclase compare
ECD_01121 -0.9 -1.8 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_00893 -0.9 -2.4 leucine-responsive global transcriptional regulator compare
ECD_02820 -0.9 -0.8 hypothetical protein compare
ECD_00202 -0.9 -3.6 endo/exonuclease/phosphatase family protein compare
ECD_02900 -0.9 -3.4 NADPH quinone reductase compare
ECD_02607 -0.9 -0.5 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_02622 -0.9 -2.2 7-carboxy-7-deazaguanine synthase; queosine biosynthesis compare
ECD_00502 -0.9 -0.8 DLP12 prophage; putative antitermination protein compare
ECD_03096 -0.9 -1.7 malate dehydrogenase, NAD(P)-binding compare
ECD_04038 -0.9 -0.9 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_02828 -0.9 -4.9 Polysialic acid transport protein kpsM compare
ECD_02132 -0.9 -1.0 ferredoxin-type protein compare
ECD_04088 -0.9 -3.5 DUF1107 family protein compare
ECD_03658 -0.9 -5.7 ATP-dependent RNA helicase compare
ECD_01368 -0.9 -1.6 putative ATP-dependent helicase compare
ECD_01584 -0.9 -1.5 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_00960 -0.9 -0.9 Ter macrodomain organizer matS-binding protein compare
ECD_01101 -0.9 -1.0 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_00681 -0.8 -0.5 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03623 -0.8 -1.7 ATP synthase, membrane-bound accessory factor compare
ECD_01173 -0.8 -2.3 putative dihydroxyacetone-specific PTS enzymes: HPr, EI components compare
ECD_02649 -0.8 -5.5 L-ribulokinase AraB-like protein compare
ECD_02737 -0.8 -3.5 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex compare
ECD_02140 -0.8 -1.9 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase compare
ECD_01111 -0.8 -1.9 inner membrane protein compare
ECD_02667 -0.8 -2.9 exonuclease V (RecBCD complex), alpha chain compare
ECD_04119 -0.8 -0.6 SopA-central-domain-like hexapeptide repeat protein compare
ECD_04049 -0.8 -0.9 PspA/IM30 family protein compare
ECD_03093 -0.8 -1.2 DUF1043 family inner membrane-anchored protein compare
ECD_01878 -0.8 -2.4 excinuclease UvrABC, endonuclease subunit compare
ECD_01621 -0.8 -1.0 glyoxalase I, Ni-dependent compare
ECD_01218 -0.8 -1.4 oligopeptide ABC transporter permease compare
ECD_02505 -0.8 -5.1 lipoprotein component of BamABCDE OM biogenesis complex compare
ECD_03611 -0.8 -2.9 phosphate ABC transporter permease compare
ECD_01164 -0.8 -2.7 D-amino acid dehydrogenase compare
ECD_01727 -0.8 -1.3 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_01225 -0.8 -1.2 putative DGPF domain-containing enzyme compare
ECD_02853 -0.8 -2.2 hypothetical protein compare
ECD_00982 -0.8 -1.5 cytochrome bd-II oxidase, subunit II compare
ECD_00646 -0.8 -2.4 lipoprotein compare
ECD_00441 -0.8 -1.0 iron export ABC transporter ATPase; peroxide resistance protein compare


Specific Phenotypes

For 6 genes in this experiment

For phage MOI 10 in Escherichia coli BL21

For phage MOI 10 across organisms