Experiment set9S518 for Escherichia coli BL21

Compare to:

Bas26

200 most detrimental genes:

  gene name fitness t score description  
ECD_00496 +1.2 2.8 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_02155 +1.1 2.7 DUF1175 family protein, putative host defense protein compare
ECD_01977 +1.0 2.6 ser/thr phosphatase-related protein compare
ECD_01897 +1.0 2.9 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_00438 +0.9 2.0 copper-responsive regulon transcriptional regulator compare
ECD_01441 +0.9 1.2 D,D-dipeptide ABC transporter ATPase compare
ECD_03017 +0.9 1.4 outer membrane lipoprotein compare
ECD_00477 +0.8 3.5 DUF457 family inner membrane protein compare
ECD_02473 +0.8 1.4 autonomous glycyl radical cofactor compare
ECD_01706 +0.8 1.7 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_02286 +0.8 1.5 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_01488 +0.8 2.0 putative phage protein compare
ECD_02320 +0.8 3.2 WGR domain protein compare
ECD_00532 +0.8 1.2 response regulator in two-component regulatory system with CusS compare
ECD_02036 +0.8 1.6 hypothetical protein compare
ECD_01396 +0.8 2.2 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_02069 +0.8 2.2 tRNA-dihydrouridine synthase C compare
ECD_01425 +0.8 2.4 nitrate reductase 2 (NRZ), beta subunit compare
ECD_01779 +0.8 0.8 putative reactive intermediate deaminase compare
ECD_00941 +0.7 2.3 NAD(P)H-dependent FMN reductase compare
ECD_01657 +0.7 2.1 UPF0118 family inner membrane protein compare
ECD_02206 +0.7 1.4 NADH:ubiquinone oxidoreductase, chain I compare
ECD_02820 +0.7 1.2 hypothetical protein compare
ECD_01058 +0.7 1.2 dihydro-orotase compare
ECD_00238 +0.7 2.8 outer membrane phosphoporin protein E compare
ECD_02292 +0.6 2.8 putative DNA-binding protein compare
ECD_00492 +0.6 1.3 hypothetical protein compare
ECD_01022 +0.6 1.3 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_03121 +0.6 1.2 putative membrane protein compare
ECD_02104 +0.6 2.2 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase compare
ECD_00940 +0.6 1.6 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_01405 +0.6 1.1 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_00982 +0.6 1.8 cytochrome bd-II oxidase, subunit II compare
ECD_01200 +0.6 2.7 sensory histidine kinase in two-component regulatory system with NarL compare
ECD_04086 +0.6 2.2 3'(2'),5'-bisphosphate nucleotidase compare
ECD_01954 +0.6 1.3 phosphomannomutase compare
ECD_00490 +0.6 2.8 putative DNA N-6-adenine-methyltransferase of bacteriophage compare
ECD_01970 +0.6 2.0 suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein compare
ECD_00315 +0.6 2.6 taurine ABC transporter periplasmic binding protein compare
ECD_03556 +0.6 1.7 ilvB operon leader peptide compare
ECD_04235 +0.6 2.0 L-galactonate oxidoreductase; L-gulonate oxidoreductase compare
ECD_01863 +0.6 1.2 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_01221 +0.6 1.3 oligopeptide ABC transporter ATPase compare
ECD_01478 +0.6 1.6 altronate oxidoreductase, NAD-dependent compare
ECD_03818 +0.6 1.0 essential cell division protein compare
ECD_02710 +0.6 1.5 CTP:molybdopterin cytidylyltransferase compare
ECD_03766 +0.6 1.8 6-deoxy-6-sulfofructose-1-phosphate aldolase compare
ECD_01404 +0.6 2.0 DUF606 family inner membrane protein compare
ECD_00956 +0.6 1.2 DUF330 family putative lipoprotein compare
ECD_03357 +0.5 1.0 acid-resistance protein compare
ECD_01126 +0.5 2.2 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase compare
ECD_03998 +0.5 1.7 GNAT family putative N-acetyltransferase compare
ECD_02456 +0.5 0.9 putative 4Fe-4S cluster-containing protein compare
ECD_00969 +0.5 1.8 putative CoA-binding protein compare
ECD_01854 +0.5 2.1 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_02322 +0.5 1.8 sulfate/thiosulfate transporter subunit compare
ECD_01976 +0.5 2.4 protein kinase-related putative non-specific DNA-binding protein compare
ECD_00032 +0.5 0.8 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_03180 +0.5 1.7 putative general secretory pathway component, cryptic compare
ECD_01879 +0.5 1.0 response regulator in two-component regulatory system with BarA compare
ECD_01048 +0.5 1.3 multicopy suppressor of secY and secA compare
ECD_01828 +0.5 1.7 zinc ABC transporter periplasmic binding protein compare
ECD_01300 +0.5 1.5 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_00667 +0.5 1.2 DUF1722 family protein compare
ECD_00500 +0.5 1.0 DLP12 prophage; endonuclease RUS compare
ECD_01599 +0.5 1.1 SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex compare
ECD_01681 +0.5 0.9 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01481 +0.5 1.3 glutaminase 2 compare
ECD_04139 +0.5 1.9 uncharacterized protein compare
ECD_02792 +0.5 1.4 oxidative damage protective factor for iron-sulfur proteins compare
ECD_02080 +0.5 1.1 galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor compare
ECD_01238 +0.5 2.2 component I of anthranilate synthase compare
ECD_00293 +0.5 1.9 carbonic anhydrase compare
ECD_02048 +0.5 2.0 putative hexameric AAA+ MoxR family ATPase compare
ECD_01770 +0.5 1.1 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_00502 +0.5 1.0 DLP12 prophage; putative antitermination protein compare
ECD_04213 +0.5 1.6 toxic peptide regulated by antisense sRNA symR compare
ECD_00434 +0.5 0.9 putative DNA-binding transcriptional regulator compare
ECD_00296 +0.5 1.3 thiogalactoside acetyltransferase compare
ECD_01918 +0.5 1.6 LysR family putative transcriptional regulator compare
ECD_02172 +0.5 1.2 putative L-rhamnonate transporter compare
ECD_01368 +0.4 1.1 putative ATP-dependent helicase compare
ECD_02075 +0.4 1.5 dihydropyrimidine dehydrogenase, NADH-dependent, subunit N compare
ECD_01189 +0.4 1.6 transglutaminase-like TPR-repeat protein compare
ECD_01901 +0.4 1.8 cobalamin synthase compare
ECD_03486 +0.4 2.1 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_00464 +0.4 1.0 glycerate kinase II compare
ECD_02149 +0.4 1.4 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit compare
ECD_04362 +0.4 1.0 hypothetical protein compare
ECD_02153 +0.4 2.7 tandem DUF2300 domain protein, putative host defense protein compare
ECD_01319 +0.4 2.0 putative Zn(II) transporter compare
ECD_02828 +0.4 2.1 Polysialic acid transport protein kpsM compare
ECD_00857 +0.4 2.1 ribosomal protein S6 modification protein compare
ECD_01001 +0.4 1.4 TorA-maturation chaperone compare
ECD_01375 +0.4 1.0 putative periplasmic protein compare
ECD_03760 +0.4 1.3 outer membrane porin L; putative sulfolipid porin compare
ECD_01168 +0.4 0.9 lytic murein endotransglycosylase E compare
ECD_00288 +0.4 2.3 2-methylcitrate dehydratase compare
ECD_02330 +0.4 1.3 penicillin binding protein PBP4B; weak DD-carboxypeptidase activity compare
ECD_02811 +0.4 1.9 hypothetical protein compare
ECD_02443 +0.4 1.5 serine hydroxymethyltransferase compare
ECD_02135 +0.4 1.6 ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA compare
ECD_00622 +0.4 2.4 glutamate/aspartate ABC transporter permease compare
ECD_02176 +0.4 1.7 outer membrane protein, putative porin compare
ECD_01101 +0.4 1.3 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_00706 +0.4 1.1 putative periplasmic protein compare
ECD_00244 +0.4 1.5 PaoABC aldehyde oxidoreductase, FAD-containing subunit compare
ECD_01443 +0.4 1.2 D,D-dipeptide ABC transporter permease compare
ECD_00877 +0.4 2.2 HCP oxidoreductase, NADH-dependent compare
ECD_00405 +0.4 1.3 outer membrane lipoprotein compare
ECD_01713 +0.4 1.0 succinylglutamate desuccinylase compare
ECD_02321 +0.4 1.3 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_01907 +0.4 1.6 hypothetical protein compare
ECD_00380 +0.4 0.6 cytochrome o ubiquinol oxidase subunit IV compare
ECD_01671 +0.4 1.8 phosphoenolpyruvate synthase compare
ECD_00192 +0.4 1.3 putative lipoprotein compare
ECD_00859 +0.4 1.3 putrescine ABC transporter periplasmic binding protein compare
ECD_04194 +0.4 1.1 uncharacterized protein compare
ECD_01293 +0.4 0.9 putative family 65 glycosyl hydrolase compare
ECD_04147 +0.4 1.2 hypothetical protein compare
ECD_02521 +0.4 1.7 uncharacterized protein compare
ECD_01281 +0.4 1.6 regulatory protein for phage-shock-protein operon compare
ECD_03073 +0.4 2.0 biosynthetic peptidoglycan transglycosylase compare
ECD_00233 +0.4 1.1 xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase compare
ECD_01896 +0.4 0.9 putative multdrug exporter, MATE family compare
ECD_00593 +0.4 1.3 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein compare
ECD_01852 +0.4 0.9 chemotaxis regulator, protein phosphatase for CheY compare
ECD_02405 +0.4 1.2 ancillary SecYEG translocon subunit; putative anti-RcsB factor compare
ECD_04251 +0.4 1.8 salt-inducible putative ABC transporter periplasmic binding protein compare
ECD_02741 +0.4 2.1 UPF0149 family protein compare
ECD_00803 +0.4 0.5 repressor of biofilm formation by indole transport regulation compare
ECD_01075 +0.4 2.2 flagellar protein of basal-body outer-membrane L ring compare
ECD_01459 +0.4 1.4 putative oxidoreductase compare
ECD_03532 +0.4 1.7 hypothetical protein compare
ECD_03352 +0.4 1.6 arsenate reductase compare
ECD_01590 +0.4 1.4 maltose and glucose-specific PTS enzyme IIB component and IIC component compare
ECD_02345 +0.4 1.3 ethanolamine utilization protein, HSP70/actin superfamily protein compare
ECD_02278 +0.4 1.0 multidrug resistance efflux pump membrane fusion protein compare
ECD_03917 +0.4 1.9 stress-induced protein, UPF0337 family compare
ECD_02032 +0.4 1.3 hydoxyethylthiazole kinase compare
ECD_02998 +0.4 1.1 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01747 +0.4 1.1 methionine sulfoxide reductase B compare
ECD_00450 +0.3 0.7 conserved protein, rhs-like protein compare
ECD_03338 +0.3 1.3 DUF4049 family protein compare
ECD_03696 +0.3 0.5 DUF2628 family putative inner membrane protein compare
ECD_01589 +0.3 0.6 transcriptional repressor of Mal regulon compare
ECD_00054 +0.3 0.9 protein associated with Co2+ and Mg2+ efflux compare
ECD_02059 +0.3 1.2 putative ABC transporter ATPase compare
ECD_04084 +0.3 1.1 DUF24 family HxlR-type putative transcriptional regulator compare
ECD_01064 +0.3 1.2 putative oxidoreductase compare
ECD_02175 +0.3 1.0 inactive PncC family protein compare
ECD_00997 +0.3 0.8 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_02093 +0.3 1.2 putative nucleoside transporter compare
ECD_01614 +0.3 1.0 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_04123 +0.3 1.1 DUF898 family inner membrane protein compare
ECD_02972 +0.3 1.2 DUF805 family inner membrane protein compare
ECD_01130 +0.3 1.2 putative lysogenization regulator compare
ECD_01842 +0.3 0.7 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_02100 +0.3 1.1 UPF0153 cysteine cluster protein compare
ECD_01012 +0.3 0.9 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_02396 +0.3 1.0 uncharacterized protein compare
ECD_01104 +0.3 0.7 putative UPF0227 family esterase compare
ECD_00432 +0.3 0.7 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_00552 +0.3 0.6 stimulator of EntF adenylation activity, MbtH-like compare
ECD_01390 +0.3 0.8 IS609 transposase B compare
ECD_00777 +0.3 1.6 glutamine transporter subunit compare
ECD_04212 +0.3 0.9 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_01838 +0.3 1.4 isochorismatase family protein compare
ECD_01060 +0.3 1.6 glutaredoxin 2 (Grx2) compare
ECD_03479 +0.3 1.7 Lipid A-core, surface polymer ligase compare
ECD_01632 +0.3 1.5 cyclopropane fatty acyl phospholipid synthase, SAM-dependent compare
ECD_02365 +0.3 0.6 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_01248 +0.3 0.8 inner membrane protein, S49 peptidase family protein compare
ECD_01003 +0.3 1.2 DnaK co-chaperone; curved DNA-binding protein compare
ECD_03083 +0.3 1.6 putative N-acetylmannosamine-6-P epimerase compare
ECD_03817 +0.3 1.2 peptidase component of the HslUV protease compare
ECD_00801 +0.3 1.0 putative membrane-anchored diguanylate cyclase compare
ECD_00300 +0.3 1.8 mhp operon transcriptional activator compare
ECD_01816 +0.3 1.5 protease II compare
ECD_01792 +0.3 0.8 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_03956 +0.3 1.7 D-allose kinase compare
ECD_01611 +0.3 1.4 outer membrane lipoprotein compare
ECD_03653 +0.3 0.9 peptidyl-prolyl cis-trans isomerase C (rotamase C) compare
ECD_00843 +0.3 0.7 phage baseplate assembly protein compare
ECD_00531 +0.3 1.6 copper-sensing histidine kinase in two-component regulatory system with CusR compare
ECD_00205 +0.3 1.3 hydroxyacylglutathione hydrolase compare
ECD_02116 +0.3 1.4 spermidine nucleoid-associated protein compare
ECD_01577 +0.3 0.3 response regulator of RstAB two-component system compare
ECD_00246 +0.3 1.0 DUF1440 family inner membrane acid resistance protein compare
ECD_04357 +0.3 1.0 small predicted membrane protein compare
ECD_02385 +0.3 1.8 putative UPF0118 family inner membrane permease compare
ECD_00569 +0.3 1.3 Spo0J family protein, ParB-like nuclease domain compare
ECD_01408 +0.3 1.5 putative iron outer membrane transporter compare
ECD_00802 +0.3 0.5 ribosomal protein S12 methylthiotransferase compare
ECD_00601 +0.3 1.9 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) compare
ECD_01717 +0.3 1.4 succinylornithine transaminase, PLP-dependent compare
ECD_01983 +0.3 0.6 sensory histidine kinase in two-component regulatory system with BaeR compare
ECD_02173 +0.3 1.3 L-rhamnonate dehydratase compare
ECD_01573 +0.3 1.4 DUF1471 family periplasmic protein compare
ECD_01974 +0.3 1.3 3-methyl-adenine DNA glycosylase II compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms