Experiment set9S487 for Escherichia coli BL21

Compare to:

EV116

200 most important genes:

  gene name fitness t score description  
ECD_03983 -6.9 -4.8 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_03877 -6.4 -3.8 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_04384 -6.3 -3.9 small predicted membrane protein compare
ECD_00206 -6.2 -4.3 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_03985 -6.0 -4.1 lipid A phosphoethanolamine transferase compare
ECD_02181 -5.8 -4.0 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_02183 -5.8 -4.0 4-amino-4-deoxy-L-arabinose transferase compare
ECD_02179 -5.8 -4.0 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_03840 -5.7 -10.4 LPS heptose I phosphoethanolamine transferase compare
ECD_03984 -5.7 -5.5 response regulator in two-component regulatory system with BasS compare
ECD_04388 -5.6 -2.1 putative membrane-bound BasS regulator compare
ECD_00061 -5.6 -11.9 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_01930 -5.5 -5.3 UDP-glucose 6-dehydrogenase compare
ECD_00882 -5.4 -5.3 DUF535 family protein compare
ECD_02182 -5.4 -3.7 undecaprenyl phosphate-alpha-L-ara4FN deformylase compare
ECD_02180 -5.3 -3.7 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_00831 -5.3 -3.4 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_00015 -5.1 -3.5 chaperone Hsp40, DnaK co-chaperone compare
ECD_03240 -5.1 -9.8 cell division protein that binds to the septal ring compare
ECD_02523 -5.0 -5.5 tributyltin-inducible repressor of ygaVP compare
ECD_03473 -5.0 -9.6 LPS(HepIII)-glucuronic acid glycosyltransferase compare
ECD_02539 -5.0 -6.0 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_03671 -4.8 -3.3 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_01802 -4.8 -5.7 RNA chaperone, putative ProP translation regulator compare
ECD_02534 -4.7 -9.1 glycine betaine/proline ABC transporter permease compare
ECD_t00011 -4.6 -1.8 tRNA-Gln compare
ECD_00392 -4.5 -4.4 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_02186 -4.5 -4.4 inactive two-component system connector protein compare
ECD_03668 -4.5 -3.1 TDP-fucosamine acetyltransferase compare
ECD_02242 -4.5 -4.4 DedA family inner membrane protein compare
ECD_02927 -4.5 -3.1 undecaprenyl pyrophosphate phosphatase compare
ECD_02535 -4.3 -11.1 glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein compare
ECD_03046 -4.1 -2.8 transcript cleavage factor compare
ECD_00930 -4.1 -2.7 M15A protease-related family periplasmic protein compare
ECD_02443 -4.0 -2.8 serine hydroxymethyltransferase compare
ECD_02882 -4.0 -5.5 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter compare
ECD_03241 -3.8 -3.7 3-dehydroquinate synthase compare
ECD_01396 -3.8 -2.4 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_01645 -3.8 -2.5 pyruvate kinase I compare
ECD_03731 -3.8 -2.6 TatABCE protein translocation system subunit compare
ECD_01879 -3.8 -1.4 response regulator in two-component regulatory system with BarA compare
ECD_00808 -3.7 -2.9 undecaprenyl pyrophosphate phosphatase compare
ECD_00333 -3.7 -3.6 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_02533 -3.7 -9.6 glycine betaine/proline ABC transporter periplasmic binding protein conserved
ECD_03118 -3.7 -7.0 tRNA-dihydrouridine synthase B compare
ECD_02331 -3.7 -3.3 porphyrinogen oxidase, cytoplasmic compare
ECD_03349 -3.6 -5.0 glutathione oxidoreductase compare
ECD_03036 -3.6 -2.5 transcription termination/antitermination L factor compare
ECD_02540 -3.6 -13.0 multidrug efflux system compare
ECD_02445 -3.5 -4.2 regulatory protein P-II for glutamine synthetase compare
ECD_01601 -3.5 -1.3 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_03132 -3.5 -2.4 dehydroshikimate reductase, NAD(P)-binding compare
ECD_03070 -3.4 -2.4 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_00509 -3.4 -2.3 DLP12 prophage; putative lipoprotein compare
ECD_01084 -3.4 -4.1 DUF177 family protein compare
ECD_02857 -3.4 -1.3 hypothetical protein compare
ECD_00342 -3.3 -3.2 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_03797 -3.3 -2.3 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_02105 -3.2 -9.5 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_01162 -3.2 -2.1 fatty acid metabolism regulon transcriptional regulator compare
ECD_03756 -3.2 -6.5 GTP-binding protein compare
ECD_00124 -3.2 -3.8 hypoxanthine phosphoribosyltransferase compare
ECD_03040 -3.1 -2.3 preprotein translocase membrane subunit compare
ECD_03005 -3.1 -2.4 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_02423 -3.1 -4.6 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_02484 -3.1 -4.7 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_03093 -3.1 -1.4 DUF1043 family inner membrane-anchored protein compare
ECD_00899 -3.0 -2.3 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_02541 -3.0 -10.6 multidrug efflux system protein compare
ECD_03673 -3.0 -7.8 UDP-N-acetyl-D-mannosaminuronic acid transferase compare
ECD_01489 -3.0 -2.1 transcriptional repressor of multiple antibiotic resistance compare
ECD_00081 -3.0 -2.1 transcriptional repressor-activator for carbon metabolism compare
ECD_01081 -3.0 -2.3 uncharacterized protein compare
ECD_02659 -2.9 -8.9 glycine cleavage system transcriptional activator; autorepressor compare
ECD_01928 -2.9 -2.5 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_00830 -2.9 -2.7 hypothetical protein compare
ECD_03818 -2.9 -2.8 essential cell division protein compare
ECD_00601 -2.9 -7.0 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) compare
ECD_01250 -2.9 -1.6 DNA topoisomerase I, omega subunit compare
ECD_01624 -2.9 -2.2 glutaredoxin-4 compare
ECD_03669 -2.8 -3.9 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_01262 -2.8 -3.3 cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability compare
ECD_02964 -2.8 -6.6 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter conserved
ECD_03626 -2.8 -7.8 FMN-binding protein MioC compare
ECD_01130 -2.7 -3.6 putative lysogenization regulator compare
ECD_02740 -2.7 -5.8 proline aminopeptidase P II compare
ECD_02629 -2.7 -7.6 (p)ppGpp synthetase I/GTP pyrophosphokinase compare
ECD_00593 -2.6 -2.4 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein compare
ECD_03735 -2.6 -4.7 NAD(P)H-flavin reductase compare
ECD_00006 -2.6 -5.7 peroxide resistance protein, lowers intracellular iron compare
ECD_00413 -2.5 -7.0 multidrug efflux system protein compare
ECD_03687 -2.5 -1.6 site-specific tyrosine recombinase compare
ECD_00880 -2.5 -1.6 aquaporin Z compare
ECD_01300 -2.5 -2.9 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_02548 -2.4 -3.0 regulatory protein for RecA compare
ECD_01263 -2.4 -3.9 ribonuclease II compare
ECD_04193 -2.3 -2.0 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_02524 -2.3 -2.6 DUF2892 family inner membrane rhodanese compare
ECD_04070 -2.3 -1.6 50S ribosomal subunit protein L9 compare
ECD_03289 -2.3 -9.4 d-gluconate inducible gluconate regulon transcriptional repressor compare
ECD_00960 -2.3 -2.0 Ter macrodomain organizer matS-binding protein compare
ECD_02889 -2.3 -4.3 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_00393 -2.2 -2.1 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_02278 -2.2 -2.2 multidrug resistance efflux pump membrane fusion protein compare
ECD_01774 -2.2 -1.6 ribonuclease D compare
ECD_01946 -2.2 -1.4 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit compare
ECD_01273 -2.2 -1.8 putrescine importer compare
ECD_00142 -2.1 -3.3 poly(A) polymerase compare
ECD_02506 -2.1 -4.1 UPF0125 family protein compare
ECD_02464 -2.1 -4.0 SoxR iron-sulfur cluster reduction factor component compare
ECD_00354 -2.1 -4.1 tRNA-guanine transglycosylase compare
ECD_01561 -2.1 -1.8 H(+)/Cl(-) exchange transporter compare
ECD_01487 -2.1 -3.1 phage N15 gp48-like protein compare
ECD_01301 -2.1 -1.5 lipid hydroperoxide peroxidase compare
ECD_04265 -2.0 -5.8 DNA repair protein compare
ECD_01105 -2.0 -3.7 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_03509 -2.0 -4.8 ATP-dependent DNA helicase compare
ECD_03119 -2.0 -1.4 global DNA-binding transcriptional dual regulator compare
ECD_00950 -2.0 -1.3 FtsZ stabilizer compare
ECD_00269 -2.0 -3.7 choline-inducible betIBA-betT divergent operon transcriptional repressor compare
ECD_02114 -2.0 -3.2 putative ATP-dependent DNA or RNA helicase compare
ECD_00414 -2.0 -5.0 multidrug efflux system compare
ECD_03498 -2.0 -3.3 nucleoid occlusion factor, anti-FtsZ division inhibitor compare
ECD_00896 -2.0 -3.0 recombination intermediate processing DNA-dependent ATPase compare
ECD_02996 -2.0 -4.1 transcriptional repressor of the aga regulon compare
ECD_01486 -1.9 -1.7 UPF0056 family inner membrane protein compare
ECD_03659 -1.9 -1.0 thioredoxin 1 compare
ECD_00053 -1.9 -1.3 diadenosine tetraphosphatase compare
ECD_01827 -1.9 -3.6 murein DD-endopeptidase, space-maker hydrolase, septation protein compare
ECD_01565 -1.9 -1.2 putative arabinose efflux transporter compare
ECD_00959 -1.9 -4.0 putative peptidase compare
ECD_03583 -1.9 -8.2 gap repair protein compare
ECD_01032 -1.9 -1.7 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_01444 -1.8 -1.3 D,D-dipeptide ABC transporter permease compare
ECD_03037 -1.8 -1.2 ribosome maturation factor for 30S subunits compare
ECD_01878 -1.8 -3.4 excinuclease UvrABC, endonuclease subunit compare
ECD_00412 -1.8 -3.1 Hha toxicity attenuator; conjugation-related protein compare
ECD_03557 -1.8 -6.8 multidrug efflux system protein compare
ECD_00629 -1.8 -3.8 tRNA-i(6)A37 methylthiotransferase compare
ECD_01655 -1.8 -1.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_03033 -1.8 -8.0 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase compare
ECD_t00083 -1.8 -1.6 tRNA-Leu compare
ECD_02914 -1.7 -2.7 BMFP family putative fusogenic protein compare
ECD_04047 -1.7 -5.2 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent compare
ECD_01770 -1.7 -1.4 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_04248 -1.7 -3.4 ribosomal-protein-S18-alanine N-acetyltransferase compare
ECD_00574 -1.7 -3.6 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02738 -1.7 -1.1 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_03571 -1.7 -0.9 DUF1375 family outer membrane protein compare
ECD_03106 -1.7 -4.7 ribonuclease G compare
ECD_02677 -1.7 -10.7 PEP-protein phosphotransferase enzyme I; GAF domain containing protein compare
ECD_01787 -1.6 -2.1 fused mannose-specific PTS enzymes: IIA component/IIB component compare
ECD_01577 -1.6 -1.0 response regulator of RstAB two-component system compare
ECD_03375 -1.6 -7.7 putative periplasmic M16 family chaperone compare
ECD_01093 -1.6 -3.4 septation protein, ampicillin sensitivity compare
ECD_02774 -1.6 -2.1 Zn-dependent metalloprotease-related protein compare
ECD_02116 -1.6 -3.3 spermidine nucleoid-associated protein compare
ECD_03501 -1.6 -5.2 UPF0701 family protein compare
ECD_02776 -1.6 -5.2 16S rRNA m(3)U1498 methyltransferase, SAM-dependent compare
ECD_03876 -1.6 -4.2 DUF416 domain protein conserved
ECD_02726 -1.6 -1.5 site-specific tyrosine recombinase compare
ECD_00552 -1.6 -1.1 stimulator of EntF adenylation activity, MbtH-like compare
ECD_00533 -1.6 -2.4 copper/silver efflux system, outer membrane component compare
ECD_03643 -1.6 -4.3 UPF0438 family protein compare
ECD_04137 -1.6 -2.3 hypothetical protein compare
ECD_03456 -1.5 -2.1 mannitol operon repressor compare
ECD_02238 -1.5 -1.5 colicin V production protein compare
ECD_00442 -1.5 -1.0 iron export ABC transporter permease; peroxide resistance protein compare
ECD_01353 -1.5 -1.1 putative membrane-anchored protein, function unknown compare
ECD_02923 -1.5 -7.4 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase compare
ECD_04088 -1.5 -3.3 DUF1107 family protein compare
ECD_01649 -1.5 -1.7 cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent compare
ECD_00353 -1.5 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
ECD_02335 -1.5 -2.1 N-acetylmuramoyl-l-alanine amidase I compare
ECD_03096 -1.5 -1.7 malate dehydrogenase, NAD(P)-binding compare
ECD_00635 -1.5 -2.5 glucosamine-6-phosphate deaminase compare
ECD_00746 -1.5 -4.5 exision nuclease of nucleotide excision repair, DNA damage recognition component compare
ECD_02537 -1.5 -6.8 putative L-valine exporter, norvaline resistance protein compare
ECD_04049 -1.4 -1.1 PspA/IM30 family protein compare
ECD_00707 -1.4 -2.7 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible compare
ECD_01189 -1.4 -2.0 transglutaminase-like TPR-repeat protein compare
ECD_03667 -1.4 -3.7 glucose-1-phosphate thymidylyltransferase compare
ECD_02409 -1.4 -5.0 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_02973 -1.4 -1.0 DUF805 family inner membrane protein compare
ECD_00748 -1.4 -2.2 molybdopterin biosynthesis protein A compare
ECD_01635 -1.4 -1.7 autotransporter adhesin-related protein compare
ECD_02190 -1.4 -2.0 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
ECD_00654 -1.4 -1.8 potassium translocating ATPase, subunit B compare
ECD_04362 -1.4 -1.3 hypothetical protein compare
ECD_01793 -1.4 -2.1 stress protein, member of the CspA-family compare
ECD_00338 -1.4 -1.4 UPF0345 family protein compare
ECD_01012 -1.4 -1.5 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_02255 -1.4 -3.1 N5-glutamine methyltransferase compare
ECD_01405 -1.3 -1.1 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_02919 -1.3 -1.4 motility and biofilm regulator compare
ECD_01479 -1.3 -1.1 putative membrane-bound diguanylate cyclase compare
ECD_03016 -1.3 -3.2 DnaA initiator-associating factor for replication initiation compare
ECD_03911 -1.3 -1.3 chorismate--pyruvate lyase compare
ECD_02549 -1.3 -4.1 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_01703 -1.3 -2.4 phospho-chitobiase; general 6-phospho-beta-glucosidase activity compare


Specific Phenotypes

For 27 genes in this experiment

For phage MOI 10 in Escherichia coli BL21

For phage MOI 10 across organisms