Experiment set9S481 for Escherichia coli BL21

Compare to:

Bas18

200 most important genes:

  gene name fitness t score description  
ECD_03119 -3.4 -2.3 global DNA-binding transcriptional dual regulator compare
ECD_04024 -3.2 -2.4 fumarate reductase (anaerobic), membrane anchor subunit compare
ECD_03797 -3.0 -5.4 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_03731 -3.0 -3.9 TatABCE protein translocation system subunit compare
ECD_02508 -2.3 -2.2 tmRNA-binding trans-translation protein compare
ECD_03036 -2.2 -3.7 transcription termination/antitermination L factor compare
ECD_01250 -2.2 -2.2 DNA topoisomerase I, omega subunit compare
ECD_02765 -2.1 -3.7 transketolase 1, thiamine triphosphate-binding compare
ECD_01681 -2.0 -1.9 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03005 -2.0 -3.6 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_03199 -2.0 -2.9 phi X174 lysis protein compare
ECD_02889 -2.0 -5.3 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_00867 -1.9 -2.5 arginine ABC transporter permease compare
ECD_03692 -1.9 -6.5 magnesium/nickel/cobalt transporter compare
ECD_00634 -1.9 -2.6 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02507 -1.8 -1.2 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_03238 -1.7 -3.2 D-ribulose-5-phosphate 3-epimerase compare
ECD_00807 -1.7 -1.7 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_02132 -1.6 -1.7 ferredoxin-type protein compare
ECD_01814 -1.5 -2.2 C-N hydrolase family protein compare
ECD_03257 -1.5 -2.0 response regulator in two-component regulatory system with EnvZ compare
ECD_00492 -1.5 -1.5 hypothetical protein compare
ECD_03571 -1.5 -1.3 DUF1375 family outer membrane protein compare
ECD_02220 -1.5 -1.7 UPF0208 family inner membrane protein compare
ECD_01080 -1.4 -2.4 endoribonuclease; RNA-binding protein compare
ECD_02280 -1.4 -2.5 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_01787 -1.4 -2.1 fused mannose-specific PTS enzymes: IIA component/IIB component compare
ECD_02726 -1.4 -2.9 site-specific tyrosine recombinase compare
ECD_02207 -1.4 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_02710 -1.4 -2.2 CTP:molybdopterin cytidylyltransferase compare
ECD_00501 -1.3 -2.4 uncharacterized protein, DLP12 prophage compare
ECD_03067 -1.3 -1.0 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_00423 -1.3 -3.4 gap repair protein compare
ECD_01210 -1.3 -2.2 putative patatin-like family phospholipase compare
ECD_01851 -1.3 -3.3 flagellin export apparatus, substrate specificity protein compare
ECD_03017 -1.3 -1.5 outer membrane lipoprotein compare
ECD_04107 -1.2 -1.4 trehalose-6-P hydrolase compare
ECD_01033 -1.2 -2.7 DUF1097 family inner membrane protein compare
ECD_02724 -1.2 -6.6 ssDNA exonuclease, 5 compare
ECD_02907 -1.2 -4.1 transport channel compare
ECD_00933 -1.2 -2.3 outer membrane porin 1a (Ia compare
ECD_00496 -1.2 -1.1 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_02742 -1.2 -3.3 FtsZ stabilizer compare
ECD_02549 -1.2 -5.4 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03583 -1.2 -6.6 gap repair protein compare
ECD_t00011 -1.2 -1.8 tRNA-Gln compare
ECD_02177 -1.1 -1.7 nucleoside triphosphatase compare
ECD_01928 -1.1 -1.5 phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase compare
ECD_01878 -1.1 -3.4 excinuclease UvrABC, endonuclease subunit compare
ECD_01667 -1.1 -2.0 putative electron transfer flavoprotein, FAD-binding subunit compare
ECD_03684 -1.1 -3.4 putative lipoprotein compare
ECD_01571 -1.1 -2.1 pyridine nucleotide transhydrogenase, beta subunit compare
ECD_03509 -1.1 -3.4 ATP-dependent DNA helicase compare
ECD_00142 -1.1 -3.2 poly(A) polymerase compare
ECD_00802 -1.1 -1.9 ribosomal protein S12 methylthiotransferase compare
ECD_02667 -1.0 -5.1 exonuclease V (RecBCD complex), alpha chain compare
ECD_02258 -1.0 -1.8 putative fimbrial-like adhesin protein compare
ECD_01434 -1.0 -1.6 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_03075 -1.0 -2.9 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02548 -1.0 -2.4 regulatory protein for RecA compare
ECD_04070 -1.0 -1.8 50S ribosomal subunit protein L9 compare
ECD_00442 -1.0 -1.3 iron export ABC transporter permease; peroxide resistance protein compare
ECD_04193 -1.0 -1.5 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_03480 -0.9 -2.9 putative beta1,3-glucosyltransferase compare
ECD_03256 -0.9 -3.6 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_00006 -0.9 -3.0 peroxide resistance protein, lowers intracellular iron compare
ECD_01263 -0.9 -2.5 ribonuclease II compare
ECD_03817 -0.9 -1.8 peptidase component of the HslUV protease compare
ECD_01826 -0.9 -1.2 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03816 -0.9 -2.4 molecular chaperone and ATPase component of HslUV protease compare
ECD_04038 -0.9 -1.0 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_04142 -0.9 -2.3 GFO/IDH/MOCA family putative oxidoreductase NAD(P)-dependent compare
ECD_02130 -0.9 -1.6 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_03625 -0.9 -2.1 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02331 -0.9 -1.5 porphyrinogen oxidase, cytoplasmic compare
ECD_03242 -0.9 -1.3 shikimate kinase I compare
ECD_03669 -0.9 -2.5 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_02345 -0.9 -2.1 ethanolamine utilization protein, HSP70/actin superfamily protein compare
ECD_03093 -0.9 -1.2 DUF1043 family inner membrane-anchored protein compare
ECD_01645 -0.9 -1.3 pyruvate kinase I compare
ECD_02318 -0.9 -1.7 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase compare
ECD_00834 -0.8 -1.1 putative capsid scaffolding protein compare
ECD_03535 -0.8 -2.5 putative IS protein compare
ECD_03507 -0.8 -1.9 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_01277 -0.8 -1.5 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase compare
ECD_03064 -0.8 -1.6 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_00667 -0.8 -1.4 DUF1722 family protein compare
ECD_01489 -0.8 -1.7 transcriptional repressor of multiple antibiotic resistance compare
ECD_02423 -0.8 -3.0 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_01763 -0.8 -1.4 diguanylate cyclase compare
ECD_00925 -0.8 -1.1 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_03086 -0.8 -2.4 sialic acid-inducible nan operon repressor compare
ECD_00406 -0.8 -1.4 excision repair protein, alkyltransferase-like protein ATL compare
ECD_02242 -0.8 -2.7 DedA family inner membrane protein compare
ECD_01601 -0.8 -0.9 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare
ECD_01565 -0.8 -0.7 putative arabinose efflux transporter compare
ECD_00434 -0.8 -1.0 putative DNA-binding transcriptional regulator compare
ECD_01445 -0.8 -1.5 D,D-dipeptide ABC transporter periplasmic binding protein compare
ECD_03730 -0.8 -2.4 TatABCE protein translocation system subunit compare
ECD_01162 -0.8 -1.2 fatty acid metabolism regulon transcriptional regulator compare
ECD_01726 -0.8 -1.8 molybdopterin synthase sulfurtransferase compare
ECD_00333 -0.8 -3.2 pyrroline-5-carboxylate reductase, NAD(P)-binding compare
ECD_00053 -0.7 -1.5 diadenosine tetraphosphatase compare
ECD_01930 -0.7 -4.6 UDP-glucose 6-dehydrogenase compare
ECD_03983 -0.7 -5.2 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_01175 -0.7 -2.2 dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit compare
ECD_03249 -0.7 -1.9 adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase compare
ECD_01760 -0.7 -2.0 putative MFS transporter, inner membrane protein compare
ECD_01854 -0.7 -1.2 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA compare
ECD_00459 -0.7 -1.9 tartronate semialdehyde reductase, NADH-dependent compare
ECD_00896 -0.7 -2.0 recombination intermediate processing DNA-dependent ATPase compare
ECD_00574 -0.7 -2.2 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01906 -0.7 -1.0 hypothetical protein compare
ECD_03590 -0.7 -0.8 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03352 -0.7 -2.2 arsenate reductase compare
ECD_02853 -0.7 -1.7 hypothetical protein compare
ECD_04102 -0.7 -2.5 ribosome-associated UPF0307 family protein compare
ECD_02201 -0.7 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_02179 -0.7 -4.4 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent compare
ECD_03314 -0.7 -1.8 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_04195 -0.7 -1.7 RpoS stabilzer after DNA damage, anti-RssB factor compare
ECD_01426 -0.7 -1.4 nitrate reductase 2 (NRZ), alpha subunit compare
ECD_00081 -0.7 -2.1 transcriptional repressor-activator for carbon metabolism compare
ECD_02792 -0.7 -1.2 oxidative damage protective factor for iron-sulfur proteins compare
ECD_00960 -0.7 -1.4 Ter macrodomain organizer matS-binding protein compare
ECD_01234 -0.7 -0.7 tryptophan synthase, alpha subunit compare
ECD_03212 -0.7 -1.5 stationary phase-induced protein, putative toxin compare
ECD_03407 -0.7 -1.7 toxic polypeptide, small compare
ECD_02618 -0.7 -1.4 putative SDR family oxidoreductase compare
ECD_02183 -0.7 -3.6 4-amino-4-deoxy-L-arabinose transferase compare
ECD_00950 -0.7 -1.2 FtsZ stabilizer compare
ECD_01755 -0.7 -1.4 putative diguanylate cyclase compare
ECD_02254 -0.7 -1.8 chorismate synthase compare
ECD_01479 -0.7 -1.3 putative membrane-bound diguanylate cyclase compare
ECD_00420 -0.7 -0.8 adenine phosphoribosyltransferase compare
ECD_03187 -0.7 -2.6 bacterioferritin, iron storage and detoxification protein compare
ECD_00124 -0.7 -1.7 hypoxanthine phosphoribosyltransferase compare
ECD_02238 -0.7 -0.7 colicin V production protein compare
ECD_03056 -0.7 -2.5 ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component compare
ECD_00552 -0.7 -1.0 stimulator of EntF adenylation activity, MbtH-like compare
ECD_03070 -0.6 -2.0 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_01591 -0.6 -0.9 PLP-dependent beta-cystathionase and maltose regulon regulator compare
ECD_02180 -0.6 -3.3 undecaprenyl phosphate-L-Ara4FN transferase compare
ECD_00194 -0.6 -2.4 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase, SAM-dependent compare
ECD_03225 -0.6 -3.9 putative DNA-binding transcriptional regulator compare
ECD_02089 -0.6 -2.3 putative kinase compare
ECD_00746 -0.6 -3.2 exision nuclease of nucleotide excision repair, DNA damage recognition component compare
ECD_01857 -0.6 -1.5 methyl-accepting chemotaxis protein II compare
ECD_01695 -0.6 -0.9 putative inner membrane protein compare
ECD_02401 -0.6 -2.1 exonuclease VII, large subunit compare
ECD_00326 -0.6 -0.8 DUF2755 family inner membrane protein compare
ECD_02228 -0.6 -2.1 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase compare
ECD_01276 -0.6 -2.3 repressor for the divergent puu operons, putrescine inducible compare
ECD_02110 -0.6 -1.9 microcin C ABC transporter ATPase compare
ECD_00861 -0.6 -2.1 putrescine ABC transporter permease compare
ECD_02038 -0.6 -1.0 hypothetical protein compare
ECD_03357 -0.6 -0.8 acid-resistance protein compare
ECD_02181 -0.6 -3.3 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase compare
ECD_03498 -0.6 -2.7 nucleoid occlusion factor, anti-FtsZ division inhibitor compare
ECD_01713 -0.6 -1.1 succinylglutamate desuccinylase compare
ECD_01812 -0.6 -1.0 CopC family protein compare
ECD_03678 -0.6 -2.6 putative uroporphyrinogen III methyltransferase compare
ECD_03848 -0.6 -3.3 transcriptional repressor of fabA and fabB compare
ECD_00502 -0.6 -0.9 DLP12 prophage; putative antitermination protein compare
ECD_03727 -0.6 -0.8 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_02659 -0.6 -3.3 glycine cleavage system transcriptional activator; autorepressor compare
ECD_00868 -0.6 -1.9 arginine transporter subunit compare
ECD_02056 -0.6 -1.5 transcriptional activator of csgD and csgBA compare
ECD_02088 -0.6 -1.7 endonuclease IV with intrinsic 3'-5' exonuclease activity compare
ECD_00632 -0.6 -3.1 UMP phosphatase compare
ECD_02101 -0.6 -1.7 elongation factor P-like protein compare
ECD_00670 -0.6 -1.3 NIF3 family metal-binding protein compare
ECD_03729 -0.6 -1.2 TatABCE protein translocation system subunit compare
ECD_01694 -0.6 -1.1 fructosamine kinase family protein compare
ECD_00156 -0.6 -1.9 UPF0126 family inner membrane protein compare
ECD_02672 -0.6 -2.3 DUF2509 family protein compare
ECD_01606 -0.6 -0.9 pyridoxamine kinase compare
ECD_01737 -0.6 -1.3 nicotinamidase/pyrazinamidase compare
ECD_01104 -0.6 -0.6 putative UPF0227 family esterase compare
ECD_01133 -0.6 -2.0 23S rRNA pseudouridine(2457) synthase compare
ECD_02334 -0.5 -1.6 GNAT family putative N-acetyltransferase compare
ECD_02470 -0.5 -1.7 ATP-dependent RNA helicase compare
ECD_01614 -0.5 -1.4 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_02324 -0.5 -1.8 sulfate/thiosulfate ABC transporter permease compare
ECD_04308 -0.5 -1.5 uncharacterized protein compare
ECD_00671 -0.5 -1.4 putative allophanate hydrolase, subunit 1 compare
ECD_03752 -0.5 -3.1 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_01102 -0.5 -1.5 thiamine kinase compare
ECD_00104 -0.5 -2.6 GMP reductase compare
ECD_01444 -0.5 -1.0 D,D-dipeptide ABC transporter permease compare
ECD_01159 -0.5 -0.7 translesion error-prone DNA polymerase V subunit; DNA polymerase activity compare
ECD_02058 -0.5 -0.7 putative ABC transporter permease compare
ECD_00673 -0.5 -1.2 UPF0271 family protein compare
ECD_03801 -0.5 -2.8 6-phosphofructokinase I compare
ECD_02039 -0.5 -0.8 hypothetical protein compare
ECD_00994 -0.5 -1.0 putative phosphatidylethanolamine synthesis regulator compare
ECD_00455 -0.5 -1.2 ureidoglycolate lyase, releasing urea compare
ECD_03425 -0.5 -0.9 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_04111 -0.5 -1.7 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_00889 -0.5 -0.9 leucyl/phenylalanyl-tRNA-protein transferase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms