Experiment set9IT096 for Pseudomonas simiae WCS417

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Growth on radish seeds for 72 hours

200 most important genes:

  gene name fitness t score description  
PS417_01575 -4.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_24710 -4.5 -7.4 lipoprotein compare
PS417_14065 -4.4 -6.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18560 -4.4 -6.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18600 -4.0 -3.5 isopropylmalate isomerase compare
PS417_18595 -3.9 -3.2 3-isopropylmalate dehydratase compare
PS417_27040 -3.6 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_18585 -3.5 -3.4 3-isopropylmalate dehydrogenase compare
PS417_02005 -3.5 -7.0 glutamate synthase compare
PS417_23805 -3.5 -3.3 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -3.4 -12.4 anthranilate synthase component I compare
PS417_27870 -3.3 -2.3 ATP-dependent DNA helicase RecG compare
PS417_23810 -3.3 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_28035 -3.3 -5.8 transcriptional regulator PhoB compare
PS417_05595 -3.2 -9.0 ornithine carbamoyltransferase compare
PS417_15285 -3.2 -1.2 type VI secretion protein compare
PS417_26740 -3.1 -6.6 homoserine acetyltransferase compare
PS417_00185 -3.1 -2.2 tryptophan synthase subunit beta compare
PS417_27795 -3.0 -1.1 orotate phosphoribosyltransferase compare
PS417_23800 -3.0 -8.5 ketol-acid reductoisomerase compare
PS417_01570 -3.0 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_24500 -2.9 -3.3 DEAD/DEAH box helicase compare
PS417_23545 -2.9 -2.5 gamma-glutamyl kinase compare
PS417_16005 -2.9 -3.3 ATPase compare
PS417_02415 -2.8 -3.8 phosphoserine phosphatase compare
PS417_23375 -2.8 -1.4 cytochrome C oxidase compare
PS417_24745 -2.8 -2.7 gamma-glutamyl phosphate reductase compare
PS417_02000 -2.8 -6.4 glutamate synthase compare
PS417_27135 -2.7 -1.0 glutamine synthetase compare
PS417_00180 -2.7 -1.8 tryptophan synthase subunit alpha compare
PS417_25225 -2.7 -2.4 MFS transporter compare
PS417_16990 -2.7 -5.4 acyl-CoA dehydrogenase compare
PS417_01915 -2.6 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01850 -2.6 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26890 -2.6 -4.6 dihydroxy-acid dehydratase compare
PS417_25720 -2.6 -6.1 anthranilate synthase component II compare
PS417_05815 -2.6 -3.4 recombinase RecA compare
PS417_26745 -2.6 -4.8 methionine biosynthesis protein MetW compare
PS417_01565 -2.5 -4.2 imidazole glycerol phosphate synthase compare
PS417_23110 -2.5 -7.0 2-isopropylmalate synthase compare
PS417_04420 -2.5 -7.6 histidinol dehydrogenase compare
PS417_00650 -2.5 -0.9 LysR family transcriptional regulator compare
PS417_22570 -2.4 -0.9 H-NS histone compare
PS417_22060 -2.4 -1.2 hypothetical protein compare
PS417_12935 -2.4 -2.3 RNA polymerase sigma factor compare
PS417_22520 -2.4 -1.9 histidine kinase compare
PS417_28040 -2.4 -3.9 histidine kinase compare
PS417_06200 -2.3 -4.9 protein-PII uridylyltransferase compare
PS417_25710 -2.3 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_16490 -2.3 -1.9 cell division protein FtsK compare
PS417_02225 -2.2 -2.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_12855 -2.2 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26370 -2.1 -3.2 RNA helicase compare
PS417_17215 -2.1 -3.0 peptidylprolyl isomerase compare
PS417_06355 -2.1 -2.1 protein-L-isoaspartate O-methyltransferase compare
PS417_01795 -2.1 -9.0 glucosyltransferase MdoH compare
PS417_23385 -2.1 -5.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_22565 -2.1 -1.1 formyltetrahydrofolate deformylase compare
PS417_04410 -2.1 -1.9 hypothetical protein compare
PS417_01635 -2.1 -4.4 nitrogen regulation protein NR(I) compare
PS417_19605 -2.0 -1.1 hypothetical protein compare
PS417_09470 -2.0 -1.5 hypothetical protein compare
PS417_08125 -2.0 -1.0 prephenate dehydratase compare
PS417_16475 -2.0 -1.8 camphor resistance protein CrcB compare
PS417_18530 -2.0 -4.2 O-succinylhomoserine sulfhydrylase compare
PS417_01605 -2.0 -1.3 phosphoglycerate mutase compare
PS417_07305 -1.9 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_24030 -1.9 -1.8 MFS transporter compare
PS417_01855 -1.9 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_28030 -1.8 -2.4 hypothetical protein compare
PS417_01580 -1.8 -1.3 imidazole glycerol phosphate synthase compare
PS417_21760 -1.8 -1.4 hypothetical protein compare
PS417_07165 -1.8 -5.4 dihydrodipicolinate synthase compare
PS417_26730 -1.8 -0.9 pyrroline-5-carboxylate reductase compare
PS417_08730 -1.8 -1.8 cytochrome C compare
PS417_01790 -1.7 -6.0 glucan biosynthesis protein G compare
PS417_05445 -1.7 -1.2 DNA mismatch repair protein MutT compare
PS417_21655 -1.7 -0.8 aspartate kinase compare
PS417_21595 -1.7 -3.4 flagellar biosynthesis protein FlgN compare
PS417_03260 -1.7 -1.5 5S ribosomal RNA compare
PS417_08155 -1.7 -1.1 integration host factor subunit beta compare
PS417_04440 -1.7 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_14655 -1.7 -1.0 lysine transporter LysE compare
PS417_04915 -1.7 -1.4 glutamine ABC transporter ATP-binding protein compare
PS417_04275 -1.6 -7.4 hypothetical protein compare
PS417_20985 -1.6 -1.1 porin compare
PS417_04415 -1.6 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -1.6 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_10275 -1.6 -2.2 histidine kinase compare
PS417_17930 -1.6 -1.5 aldehyde dehydrogenase compare
PS417_10910 -1.6 -1.7 FAD-dependent oxidoreductase compare
PS417_07795 -1.6 -2.6 hypothetical protein compare
PS417_09915 -1.6 -1.3 hypothetical protein compare
PS417_19675 -1.6 -4.4 chemotaxis protein CheY compare
PS417_19690 -1.5 -3.7 histidine kinase compare
PS417_08545 -1.5 -1.4 aromatic ring-opening dioxygenase LigB compare
PS417_18690 -1.5 -2.5 aromatic amino acid aminotransferase compare
PS417_08135 -1.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09210 -1.5 -1.2 TetR family transcriptional regulator compare
PS417_21510 -1.5 -1.4 histidine kinase compare
PS417_05860 -1.5 -2.0 hypothetical protein compare
PS417_01640 -1.5 -3.7 histidine kinase compare
PS417_24570 -1.5 -3.6 AsnC family transcriptional regulator compare
PS417_20170 -1.5 -2.1 hypothetical protein compare
PS417_27195 -1.5 -0.7 N-acetylglutamate synthase compare
PS417_02575 -1.5 -2.4 membrane protein compare
PS417_25715 -1.5 -2.3 anthranilate phosphoribosyltransferase compare
PS417_20030 -1.5 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_03100 -1.4 -0.7 pilus assembly protein compare
PS417_25645 -1.4 -3.8 peptidase M23 compare
PS417_09865 -1.4 -1.2 hypothetical protein compare
PS417_27425 -1.4 -5.0 exopolyphosphatase compare
PS417_15820 -1.4 -3.1 universal stress protein UspA compare
PS417_09465 -1.4 -3.7 FMN reductase compare
PS417_25650 -1.4 -2.3 anhydro-N-acetylmuramic acid kinase compare
PS417_20725 -1.4 -1.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_04380 -1.4 -0.9 ABC transporter permease compare
PS417_17855 -1.4 -3.0 major facilitator transporter compare
PS417_23045 -1.4 -1.8 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_03560 -1.4 -1.3 GTP-binding protein compare
PS417_01955 -1.4 -4.1 peptidase compare
PS417_21705 -1.4 -2.9 arginine N-succinyltransferase compare
PS417_17945 -1.4 -0.7 hypothetical protein compare
PS417_23380 -1.4 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_06335 -1.4 -1.7 S-formylglutathione hydrolase compare
PS417_11000 -1.4 -3.2 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_21900 -1.4 -3.0 allophanate hydrolase compare
PS417_13140 -1.4 -1.5 oxidoreductase compare
PS417_02555 -1.4 -9.3 exoribonuclease R compare
PS417_08170 -1.4 -6.4 capsular biosynthesis protein compare
PS417_17035 -1.4 -0.9 Cro/Cl family transcriptional regulator compare
PS417_28185 -1.4 -2.0 homocysteine methyltransferase compare
PS417_22450 -1.4 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_23775 -1.4 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_19800 -1.4 -1.5 flagellar motor switch protein FliG compare
PS417_21065 -1.4 -1.6 3-methylitaconate isomerase compare
PS417_24650 -1.3 -1.1 membrane protein compare
PS417_08685 -1.3 -0.9 flagellar hook-length control protein FliK compare
PS417_21140 -1.3 -2.7 LysR family transcriptional regulator compare
PS417_04060 -1.3 -2.4 dipeptide ABC transporter, permease component (from data) compare
PS417_11305 -1.3 -2.8 general secretion pathway protein GspF compare
PS417_00355 -1.3 -1.9 metal ABC transporter permease compare
PS417_26240 -1.3 -1.2 N-methylproline demethylase compare
PS417_17125 -1.3 -2.8 transcriptional regulator compare
PS417_15505 -1.3 -2.7 glutaminase compare
PS417_22085 -1.3 -1.8 aldehyde dehydrogenase compare
PS417_12805 -1.3 -5.3 glycogen branching protein compare
PS417_04800 -1.3 -1.5 alginate O-acetyltransferase compare
PS417_03200 -1.3 -2.0 ArsR family transcriptional regulator compare
PS417_07640 -1.3 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18545 -1.3 -2.4 cell division protein compare
PS417_16845 -1.3 -1.6 monovalent cation/H+ antiporter subunit E compare
PS417_14425 -1.3 -2.3 alkylhydroperoxidase compare
PS417_09460 -1.3 -1.9 alkanesulfonate monooxygenase compare
PS417_08515 -1.3 -2.8 hypothetical protein compare
PS417_19835 -1.3 -0.8 flagellar biosynthesis protein FliS compare
PS417_07170 -1.3 -2.9 hypothetical protein compare
PS417_06530 -1.3 -1.5 membrane protein compare
PS417_14940 -1.2 -1.2 LysR family transcriptional regulator compare
PS417_18235 -1.2 -2.2 nitrile hydratase compare
PS417_14605 -1.2 -2.3 adenylate kinase compare
PS417_09680 -1.2 -1.2 hydrolase compare
PS417_01995 -1.2 -1.3 hypothetical protein compare
PS417_15035 -1.2 -1.0 alkylhydroperoxidase compare
PS417_00925 -1.2 -1.2 hypothetical protein compare
PS417_06395 -1.2 -1.1 amino acid transporter compare
PS417_04365 -1.2 -0.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_11950 -1.2 -1.0 hypothetical protein compare
PS417_05235 -1.2 -1.2 peptidase inhibitor I42 compare
PS417_00660 -1.2 -1.8 DSBA oxidoreductase compare
PS417_15705 -1.2 -1.6 nitrate reductase compare
PS417_23315 -1.2 -0.7 transcriptional regulator compare
PS417_23330 -1.2 -1.8 hypothetical protein compare
PS417_18940 -1.2 -2.9 LysR family transcriptional regulator compare
PS417_02800 -1.2 -1.2 acetyltransferase compare
PS417_19735 -1.2 -2.3 flagellar biosynthesis protein FliQ compare
PS417_10320 -1.2 -1.9 hypothetical protein compare
PS417_13795 -1.2 -3.9 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07315 -1.2 -3.2 LysR family transcriptional regulator compare
PS417_01340 -1.2 -4.5 agmatine deiminase compare
PS417_26985 -1.2 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27835 -1.2 -4.2 endoribonuclease compare
PS417_18710 -1.2 -3.3 hypothetical protein compare
PS417_18460 -1.2 -2.8 transcriptional regulator compare
PS417_12035 -1.2 -1.6 dihydroxyacetone kinase compare
PS417_00045 -1.2 -1.5 glycerol acyltransferase compare
PS417_22445 -1.2 -1.3 ATP-dependent DNA helicase RuvB compare
PS417_04375 -1.2 -1.8 ABC transporter ATP-binding protein compare
PS417_27340 -1.2 -1.9 NADPH:quinone oxidoreductase compare
PS417_18540 -1.2 -2.5 colicin V production CvpA compare
PS417_05365 -1.2 -1.3 FAD-binding protein compare
PS417_02280 -1.2 -1.3 GlcNAc-PI de-N-acetylase compare
PS417_25360 -1.2 -3.6 Isochorismatase compare
PS417_19505 -1.2 -1.4 2,4-diaminobutyrate 4-aminotransferase compare
PS417_16760 -1.2 -1.7 membrane protein compare
PS417_12780 -1.2 -2.6 (Fe-S)-binding protein compare
PS417_02160 -1.2 -0.7 hypothetical protein compare
PS417_06680 -1.2 -4.5 nuclease PIN compare
PS417_19520 -1.2 -1.5 transcriptional regulator compare
PS417_28080 -1.2 -7.2 phosphate ABC transporter permease compare


Specific Phenotypes

For 3 genes in this experiment