Experiment set9IT089 for Pseudomonas simiae WCS417

Compare to:

Growth on radish seeds for 72 hours

200 most important genes:

  gene name fitness t score description  
PS417_18600 -5.2 -3.3 isopropylmalate isomerase compare
PS417_18595 -4.7 -3.2 3-isopropylmalate dehydratase compare
PS417_14065 -4.3 -4.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24710 -4.0 -7.2 lipoprotein compare
PS417_18585 -3.9 -2.7 3-isopropylmalate dehydrogenase compare
PS417_25720 -3.9 -5.9 anthranilate synthase component II compare
PS417_02005 -3.7 -6.5 glutamate synthase compare
PS417_27040 -3.6 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_23805 -3.6 -3.4 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -3.4 -11.3 anthranilate synthase component I compare
PS417_13510 -3.3 -1.2 polyketide cyclase compare
PS417_23800 -3.3 -7.3 ketol-acid reductoisomerase compare
PS417_07875 -3.2 -1.2 hypothetical protein compare
PS417_28040 -3.2 -3.7 histidine kinase compare
PS417_23810 -3.1 -8.0 acetolactate synthase 3 catalytic subunit compare
PS417_16005 -3.1 -2.9 ATPase compare
PS417_02415 -3.0 -2.9 phosphoserine phosphatase compare
PS417_02160 -3.0 -1.1 hypothetical protein compare
PS417_27795 -2.9 -1.1 orotate phosphoribosyltransferase compare
PS417_23545 -2.9 -2.8 gamma-glutamyl kinase compare
PS417_16195 -2.9 -1.0 AraC family transcriptional regulator compare
PS417_28035 -2.9 -4.9 transcriptional regulator PhoB compare
PS417_05595 -2.8 -8.3 ornithine carbamoyltransferase compare
PS417_18560 -2.8 -7.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_06685 -2.6 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_18530 -2.6 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_00180 -2.6 -1.8 tryptophan synthase subunit alpha compare
PS417_01640 -2.6 -4.3 histidine kinase compare
PS417_17705 -2.6 -2.3 LacI family transcriptional regulator compare
PS417_19705 -2.6 -1.7 flagellar biosynthesis regulator FlhF compare
PS417_12855 -2.6 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03260 -2.6 -1.2 5S ribosomal RNA compare
PS417_18540 -2.5 -3.8 colicin V production CvpA compare
PS417_01850 -2.5 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_17795 -2.5 -2.1 ABC transporter permease compare
PS417_24500 -2.5 -3.4 DEAD/DEAH box helicase compare
PS417_28050 -2.5 -2.6 hypothetical protein compare
PS417_04390 -2.5 -4.5 toluene tolerance protein compare
PS417_05535 -2.5 -1.6 Fis family transcriptional regulator compare
PS417_19675 -2.4 -4.8 chemotaxis protein CheY compare
PS417_08220 -2.4 -0.8 epimerase compare
PS417_00185 -2.4 -2.3 tryptophan synthase subunit beta compare
PS417_19620 -2.4 -2.0 hypothetical protein compare
PS417_02000 -2.3 -6.6 glutamate synthase compare
PS417_22060 -2.3 -1.2 hypothetical protein compare
PS417_01580 -2.3 -1.1 imidazole glycerol phosphate synthase compare
PS417_27585 -2.3 -1.3 diaminopimelate epimerase compare
PS417_23995 -2.3 -0.8 preprotein translocase subunit SecG compare
PS417_21480 -2.3 -1.4 23S rRNA pseudouridylate synthase compare
PS417_08620 -2.3 -0.8 hypothetical protein compare
PS417_08410 -2.2 -1.9 hypothetical protein compare
PS417_26890 -2.2 -4.1 dihydroxy-acid dehydratase compare
PS417_27935 -2.2 -1.2 type VI secretion protein compare
PS417_09210 -2.2 -1.3 TetR family transcriptional regulator compare
PS417_01565 -2.2 -4.3 imidazole glycerol phosphate synthase compare
PS417_26745 -2.2 -4.7 methionine biosynthesis protein MetW compare
PS417_21000 -2.2 -1.6 CrfX protein compare
PS417_20635 -2.1 -0.8 ABC transporter ATP-binding protein compare
PS417_03560 -2.1 -1.4 GTP-binding protein compare
PS417_26740 -2.1 -6.2 homoserine acetyltransferase compare
PS417_02510 -2.1 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_03385 -2.1 -1.1 flavin reductase compare
PS417_17215 -2.1 -3.0 peptidylprolyl isomerase compare
PS417_08155 -2.1 -1.2 integration host factor subunit beta compare
PS417_23110 -2.1 -6.8 2-isopropylmalate synthase compare
PS417_06375 -2.0 -0.7 deoxycytidine triphosphate deaminase compare
PS417_21595 -2.0 -2.3 flagellar biosynthesis protein FlgN compare
PS417_27870 -2.0 -1.9 ATP-dependent DNA helicase RecG compare
PS417_16990 -2.0 -4.4 acyl-CoA dehydrogenase compare
PS417_07465 -2.0 -2.8 LysR family transcriptional regulator compare
PS417_24765 -2.0 -3.4 membrane protein compare
PS417_22565 -2.0 -1.0 formyltetrahydrofolate deformylase compare
PS417_17405 -2.0 -1.8 AraC family transcriptional regulator compare
PS417_15780 -2.0 -2.2 membrane protein compare
PS417_06445 -1.9 -1.8 iron-siderophore ABC transporter permease compare
PS417_19885 -1.9 -1.8 flagellar basal body rod protein FlgG compare
PS417_01605 -1.9 -1.3 phosphoglycerate mutase compare
PS417_24745 -1.9 -3.1 gamma-glutamyl phosphate reductase compare
PS417_17560 -1.9 -3.0 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_01570 -1.9 -1.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22990 -1.9 -1.1 iron dicitrate transport regulator FecR compare
PS417_11440 -1.9 -1.5 hypothetical protein compare
PS417_26985 -1.8 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_12805 -1.8 -7.2 glycogen branching protein compare
PS417_23390 -1.8 -4.1 ubiquinol oxidase subunit II compare
PS417_26730 -1.8 -0.9 pyrroline-5-carboxylate reductase compare
PS417_11375 -1.8 -2.3 hypothetical protein compare
PS417_22870 -1.8 -1.9 lipoprotein compare
PS417_05560 -1.8 -1.6 ABC transporter compare
PS417_23370 -1.7 -2.6 protoheme IX farnesyltransferase compare
PS417_19850 -1.7 -6.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_21585 -1.7 -5.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_04650 -1.7 -0.8 D-alanine--D-alanine ligase compare
PS417_19880 -1.7 -5.3 flagellar basal body L-ring protein compare
PS417_21125 -1.7 -4.5 phosphoadenosine phosphosulfate reductase compare
PS417_06330 -1.7 -2.7 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_04375 -1.7 -1.6 ABC transporter ATP-binding protein compare
PS417_19690 -1.7 -5.1 histidine kinase compare
PS417_01575 -1.7 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_15225 -1.7 -2.8 alpha/beta hydrolase compare
PS417_07305 -1.7 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_16475 -1.7 -2.8 camphor resistance protein CrcB compare
PS417_22445 -1.7 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_21655 -1.7 -0.8 aspartate kinase compare
PS417_01790 -1.7 -5.8 glucan biosynthesis protein G compare
PS417_07710 -1.7 -4.5 membrane protein compare
PS417_06200 -1.7 -4.5 protein-PII uridylyltransferase compare
PS417_26220 -1.6 -1.9 Rieske (2Fe-2S) protein compare
PS417_21565 -1.6 -2.2 flagellar basal body rod protein FlgC compare
PS417_01795 -1.6 -8.0 glucosyltransferase MdoH compare
PS417_00085 -1.6 -2.4 16S rRNA methyltransferase compare
PS417_18690 -1.6 -2.7 aromatic amino acid aminotransferase compare
PS417_04090 -1.6 -2.8 hypothetical protein compare
PS417_01635 -1.6 -5.4 nitrogen regulation protein NR(I) compare
PS417_05985 -1.6 -2.7 chemotaxis protein CheY compare
PS417_04420 -1.6 -5.9 histidinol dehydrogenase compare
PS417_14935 -1.6 -1.3 transposase compare
PS417_07165 -1.6 -4.8 dihydrodipicolinate synthase compare
PS417_18105 -1.6 -1.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_06600 -1.6 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_25710 -1.6 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_00510 -1.6 -0.8 membrane protein compare
PS417_27425 -1.6 -6.4 exopolyphosphatase compare
PS417_25790 -1.6 -3.6 aminoglycoside phosphotransferase compare
PS417_24085 -1.5 -1.9 protein RnfH compare
PS417_28070 -1.5 -4.1 phosphate ABC transporter ATP-binding protein compare
PS417_14140 -1.5 -1.2 membrane protein compare
PS417_21135 -1.5 -3.4 Asp/Glu/hydantoin racemase compare
PS417_25715 -1.5 -2.4 anthranilate phosphoribosyltransferase compare
PS417_05710 -1.5 -2.5 hypothetical protein compare
PS417_23490 -1.5 -0.7 dihydrofolate reductase compare
PS417_15885 -1.5 -1.2 GCN5 family acetyltransferase compare
PS417_23910 -1.5 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_19735 -1.5 -3.1 flagellar biosynthesis protein FliQ compare
PS417_23385 -1.5 -4.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_27290 -1.5 -1.2 hypothetical protein compare
PS417_26995 -1.5 -4.6 phosphoserine phosphatase compare
PS417_20985 -1.5 -1.0 porin compare
PS417_04060 -1.5 -1.8 dipeptide ABC transporter, permease component (from data) compare
PS417_13800 -1.5 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08135 -1.5 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24935 -1.5 -0.7 hypothetical protein compare
PS417_27195 -1.5 -0.7 N-acetylglutamate synthase compare
PS417_11485 -1.5 -1.3 AraC family transcriptional regulator compare
PS417_24575 -1.5 -0.9 hypothetical protein compare
PS417_11380 -1.4 -2.5 peptidylprolyl isomerase compare
PS417_01285 -1.4 -1.1 haloacid dehalogenase compare
PS417_21695 -1.4 -1.5 succinylglutamate-semialdehyde dehydrogenase compare
PS417_03935 -1.4 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_02440 -1.4 -2.3 flagellar motor protein MotB compare
PS417_23210 -1.4 -1.4 serine acetyltransferase compare
PS417_02280 -1.4 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_19660 -1.4 -3.0 cobalamin biosynthesis protein CobQ compare
PS417_19730 -1.4 -1.4 flagellar biosynthesis protein FliR compare
PS417_09605 -1.4 -1.4 glycosyl transferase compare
PS417_19755 -1.4 -1.0 flagellar motor switch protein FliM compare
PS417_00355 -1.4 -1.9 metal ABC transporter permease compare
PS417_17490 -1.4 -1.7 ABC transporter ATP-binding protein compare
PS417_27135 -1.4 -0.7 glutamine synthetase compare
PS417_07170 -1.4 -3.0 hypothetical protein compare
PS417_14835 -1.4 -3.7 amidase compare
PS417_15745 -1.4 -1.5 lipid carrier protein compare
PS417_11000 -1.4 -2.6 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_00900 -1.3 -1.5 4-aminobutyrate aminotransferase compare
PS417_19840 -1.3 -5.3 flagellar cap protein FliD compare
PS417_19650 -1.3 -2.6 chemotaxis protein CheW compare
PS417_22935 -1.3 -1.9 hypothetical protein compare
PS417_19860 -1.3 -7.5 flagellar hook protein FlgL compare
PS417_12755 -1.3 -1.8 RND transporter compare
PS417_07565 -1.3 -1.7 hypothetical protein compare
PS417_07595 -1.3 -2.5 PasA protein compare
PS417_04385 -1.3 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_19795 -1.3 -5.1 flagellar assembly protein FliH compare
PS417_26470 -1.3 -1.1 cytochrome C compare
PS417_04275 -1.3 -6.0 hypothetical protein compare
PS417_23150 -1.3 -1.6 Cro/Cl family transcriptional regulator compare
PS417_11570 -1.3 -1.9 ABC transporter permease compare
PS417_26370 -1.3 -2.3 RNA helicase compare
PS417_14985 -1.3 -2.1 Fe-S protein compare
PS417_19335 -1.3 -2.0 isochorismatase compare
PS417_27945 -1.3 -1.1 type VI secretion protein ImpA compare
PS417_17855 -1.3 -2.7 major facilitator transporter compare
PS417_16490 -1.3 -1.4 cell division protein FtsK compare
PS417_11540 -1.3 -2.2 NAD synthetase compare
PS417_14555 -1.3 -1.7 AsnC family transcriptional regulator compare
PS417_12175 -1.3 -1.8 peptide ABC transporter permease compare
PS417_15710 -1.2 -1.7 nitrate reductase compare
PS417_24800 -1.2 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_11615 -1.2 -1.0 urea ABC transporter ATP-binding protein compare
PS417_19805 -1.2 -1.9 flagellar M-ring protein FliF compare
PS417_06490 -1.2 -2.9 hypothetical protein compare
PS417_20160 -1.2 -2.5 cysteine synthase compare
PS417_13755 -1.2 -1.8 oxidoreductase compare
PS417_02555 -1.2 -8.0 exoribonuclease R compare
PS417_21185 -1.2 -2.6 hypothetical protein compare
PS417_25290 -1.2 -1.9 hypothetical protein compare
PS417_03380 -1.2 -0.8 hypothetical protein compare
PS417_00705 -1.2 -0.9 MarR family transcriptional regulator compare
PS417_02800 -1.2 -1.1 acetyltransferase compare
PS417_26535 -1.2 -2.4 cytochrome B561 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in seeds experiments