| | gene | name | fitness | t score | description | |
|---|
| b0929 | ompF | +4.7 | 16.4 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b1185 | dsbB | +4.4 | 9.6 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b4509 | ylcG | +4.1 | 7.0 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1831 | proQ | +4.0 | 8.9 | putative solute/DNA competence effector (NCBI) | compare |
| b3860 | dsbA | +4.0 | 28.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1855 | lpxM | +3.9 | 20.7 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b1111 | ycfQ | +3.8 | 11.6 | orf, hypothetical protein (VIMSS) | compare |
| b2188 | yejM | +3.7 | 24.3 | predicted hydrolase, inner membrane (NCBI) | compare |
| b1604 | ydgH | +3.7 | 9.9 | hypothetical protein (NCBI) | compare |
| b3181 | greA | +3.6 | 10.9 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3261 | fis | +3.6 | 6.2 | DNA-binding protein Fis (NCBI) | compare |
| b0147 | yadP | +3.5 | 13.9 | orf, hypothetical protein (VIMSS) | compare |
| b2064 | asmA | +3.5 | 12.0 | predicted assembly protein (NCBI) | compare |
| b0191 | yaeJ | +3.5 | 12.3 | hypothetical protein (NCBI) | compare |
| b0122 | yacC | +3.4 | 13.1 | orf, hypothetical protein (VIMSS) | compare |
| b2617 | smpA | +3.1 | 10.3 | small membrane protein A (VIMSS) | compare |
| b3405 | ompR | +3.0 | 15.9 | osmolarity response regulator (NCBI) | compare |
| b3035 | tolC | +2.9 | 17.1 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4603 | rseX | +2.7 | 1.3 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3404 | envZ | +2.7 | 9.4 | osmolarity sensor protein (NCBI) | compare |
| b0178 | hlpA | +2.7 | 8.7 | periplasmic chaperone (NCBI) | compare |
| b3780 | rhlB | +2.6 | 18.4 | ATP-dependent RNA helicase (NCBI) | conserved |
| b0393 | rdgC | +2.6 | 16.9 | recombination associated protein (NCBI) | compare |
| b2236 | yfaE | +2.6 | 5.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b0148 | hrpB | +2.6 | 8.8 | helicase, ATP-dependent (VIMSS) | compare |
| b2512 | yfgL | +2.6 | 10.6 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3281 | aroE | +2.5 | 19.1 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b0547 | ybcN | +2.5 | 3.2 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2571 | rseB | +2.5 | 11.5 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1530 | marR | +2.5 | 3.0 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3260 | dusB | +2.4 | 4.2 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b3620 | rfaF | +2.4 | 13.1 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1049 | mdoH | +2.4 | 17.6 | glucosyltransferase MdoH (NCBI) | compare |
| b3842 | rfaH | +2.4 | 13.4 | transcriptional activator RfaH (NCBI) | compare |
| b0819 | ybiS | +2.3 | 9.3 | hypothetical protein (NCBI) | compare |
| b0438 | clpX | +2.3 | 13.3 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b1693 | aroD | +2.3 | 11.9 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b0418 | pgpA | +2.3 | 10.1 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b3778 | rep | +2.3 | 13.8 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b0226 | dinJ | +2.3 | 6.6 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b1293 | sapB | +2.3 | 4.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1048 | mdoG | +2.2 | 12.4 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b2314 | dedD | +2.2 | 6.3 | putative lipoprotein (VIMSS) | compare |
| b1627 | rsxA | +2.2 | 4.4 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b3632 | rfaQ | +2.2 | 19.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2572 | rseA | +2.2 | 7.4 | anti-sigma factor (NCBI) | compare |
| b2904 | gcvH | +2.2 | 4.1 | glycine cleavage system protein H (NCBI) | compare |
| b3911 | cpxA | +2.1 | 11.5 | two-component sensor protein (NCBI) | compare |
| b3630 | rfaP | +2.1 | 16.7 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2912 | ygfA | +2.1 | 5.2 | putative ligase (VIMSS) | compare |
| b1438 | ydcQ | +2.1 | 3.5 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1865 | nudB | +2.1 | 3.2 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1676 | pykF | +2.0 | 6.3 | pyruvate kinase (NCBI) | compare |
| b3631 | rfaG | +2.0 | 17.8 | glucosyltransferase I (NCBI) | compare |
| b0683 | fur | +2.0 | 3.0 | ferric uptake regulator (NCBI) | compare |
| b3963 | fabR | +2.0 | 10.4 | DNA-binding transcriptional repressor (RefSeq) | compare |
| b0439 | lon | +2.0 | 9.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0462 | acrB | +2.0 | 16.1 | multidrug efflux system protein (NCBI) | compare |
| b2749 | ygbE | +2.0 | 9.1 | conserved inner membrane protein (NCBI) | conserved |
| b1278 | pgpB | +1.9 | 4.0 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b0463 | acrA | +1.9 | 11.2 | multidrug efflux system (NCBI) | compare |
| b4152 | frdC | +1.9 | 1.4 | fumarate reductase subunit C (NCBI) | compare |
| b0840 | deoR | +1.9 | 5.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3751 | rbsB | +1.9 | 6.7 | D-ribose transporter subunit (NCBI) | compare |
| b1291 | sapD | +1.9 | 2.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1290 | sapF | +1.8 | 4.2 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3389 | aroB | +1.8 | 10.1 | 3-dehydroquinate synthase (NCBI) | compare |
| b2688 | gshA | +1.8 | 8.5 | glutamate--cysteine ligase (NCBI) | compare |
| b2947 | gshB | +1.8 | 5.8 | glutathione synthetase (NCBI) | compare |
| b0548 | ninE | +1.8 | 2.4 | DLP12 prophage; conserved protein (NCBI) | compare |
| b0146 | sfsA | +1.8 | 4.6 | sugar fermentation stimulation protein A (NCBI) | compare |
| b0965 | b0965 | +1.7 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0437 | clpP | +1.7 | 8.9 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1235 | rssB | +1.7 | 9.3 | response regulator of RpoS (NCBI) | compare |
| b0015 | dnaJ | +1.7 | 8.0 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b3347 | fkpA | +1.7 | 11.4 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b3133 | agaV | +1.7 | 2.0 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b1236 | galU | +1.7 | 7.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b3673 | emrD | +1.7 | 11.4 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b3204 | ptsN | +1.7 | 6.7 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b2300 | yfcE | +1.7 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0928 | aspC | +1.7 | 3.7 | aspartate aminotransferase, PLP-dependent (NCBI) | compare |
| b3806 | cyaA | +1.7 | 7.5 | adenylate cyclase (NCBI) | compare |
| b2186 | yejK | +1.7 | 9.9 | nucleoid-associated protein NdpA (NCBI) | compare |
| b1594 | dgsA | +1.7 | 4.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0688 | pgm | +1.7 | 6.2 | phosphoglucomutase (NCBI) | compare |
| b0200 | gmhB | +1.6 | 2.7 | hypothetical protein (NCBI) | compare |
| b3009 | yghB | +1.6 | 7.7 | conserved inner membrane protein (NCBI) | conserved |
| b2038 | rfbC | +1.6 | 8.4 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b1143 | ymfI | +1.6 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b1221 | narL | +1.6 | 5.8 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b3238 | yhcN | +1.6 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1480 | sra | +1.6 | 1.6 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1292 | sapC | +1.5 | 3.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3250 | mreC | +1.5 | 1.6 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b3426 | glpD | +1.5 | 5.4 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b2214 | yojL | +1.5 | 5.1 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b4373 | rimI | +1.5 | 2.6 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1095 | fabF | +1.5 | 7.8 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3248 | yhdE | +1.5 | 6.4 | Maf-like protein (NCBI) | compare |
| b0065 | yabI | +1.5 | 6.7 | conserved inner membrane protein (NCBI) | compare |
| b2784 | relA | +1.5 | 9.6 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b1739 | osmE | +1.5 | 2.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b2340 | sixA | +1.5 | 6.2 | phosphohistidine phosphatase (NCBI) | compare |
| b3052 | rfaE | +1.4 | 6.8 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b4438 | cyaR | +1.4 | 3.2 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b3750 | rbsC | +1.4 | 5.9 | ribose ABC transporter permease protein (NCBI) | compare |
| b3198 | kdsC | +1.4 | 4.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3283 | yrdD | +1.4 | 8.2 | predicted DNA topoisomerase (NCBI) | compare |
| b2096 | gatY | +1.4 | 3.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b2570 | rseC | +1.4 | 6.2 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1753 | ynjA | +1.4 | 2.4 | hypothetical protein (NCBI) | compare |
| b2903 | gcvP | +1.4 | 9.6 | glycine dehydrogenase (NCBI) | compare |
| b4000 | hupA | +1.4 | 5.0 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0849 | grxA | +1.4 | 1.8 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b3621 | rfaC | +1.4 | 7.1 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3190 | yrbA | +1.4 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b1936 | intG | +1.4 | 1.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b0125 | hpt | +1.4 | 5.6 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b1424 | mdoD | +1.4 | 6.5 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b3644 | yicC | +1.3 | 6.2 | hypothetical protein (NCBI) | compare |
| b2189 | proL | +1.3 | 1.6 | tRNA-Pro (NCBI) | compare |
| b1238 | tdk | +1.3 | 5.7 | thymidine kinase (NCBI) | compare |
| b3129 | sohA | +1.3 | 3.3 | predicted regulator (NCBI) | compare |
| b3197 | kdsD | +1.3 | 3.4 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b2501 | ppk | +1.3 | 7.7 | polyphosphate kinase (NCBI) | compare |
| b0190 | yaeQ | +1.3 | 4.4 | hypothetical protein (NCBI) | compare |
| b0007 | yaaJ | +1.3 | 7.5 | predicted transporter (NCBI) | compare |
| b3398 | yrfF | +1.2 | 4.9 | predicted inner membrane protein (NCBI) | compare |
| b1294 | sapA | +1.2 | 5.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3119 | tdcR | +1.2 | 2.7 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b2301 | yfcF | +1.2 | 2.5 | predicted enzyme (NCBI) | compare |
| b1350 | recE | +1.2 | 3.6 | Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease (NCBI) | compare |
| b1841 | yobA | +1.2 | 1.9 | hypothetical protein (NCBI) | compare |
| b3749 | rbsA | +1.2 | 6.1 | fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0726 | sucA | +1.2 | 4.2 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3252 | yhdA | +1.2 | 7.7 | conserved inner membrane protein (NCBI) | compare |
| b0613 | citG | +1.2 | 1.7 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1823 | cspC | +1.2 | 2.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b1766 | sppA | +1.2 | 5.5 | protease IV (signal peptide peptidase) (NCBI) | compare |
| b1055 | yceA | +1.2 | 2.7 | hypothetical protein (NCBI) | compare |
| b0617 | citD | +1.2 | 1.8 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2204 | napH | +1.2 | 2.0 | quinol dehydrogenase membrane component (NCBI) | compare |
| b1632 | rsxE | +1.2 | 6.3 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b0222 | lpcA | +1.1 | 3.3 | phosphoheptose isomerase (NCBI) | compare |
| b3196 | yrbG | +1.1 | 4.0 | predicted calcium/sodium:proton antiporter (NCBI) | compare |
| b4699 | fnrS | +1.1 | 0.7 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b4410 | ecnA | +1.1 | 1.2 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b4215 | ytfI | +1.1 | 1.9 | hypothetical protein (NCBI) | compare |
| b0767 | ybhE | +1.1 | 2.9 | 6-phosphogluconolactonase (NCBI) | compare |
| b3264 | envR | +1.1 | 4.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4359 | mdoB | +1.1 | 8.2 | phosphoglycerol transferase I (VIMSS) | compare |
| b1709 | btuD | +1.1 | 0.7 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1418 | cybB | +1.1 | 2.0 | cytochrome b(561) (VIMSS) | compare |
| b1630 | rsxD | +1.1 | 3.3 | electron transport complex protein RnfD (NCBI) | compare |
| b2432 | yfeY | +1.0 | 1.3 | hypothetical protein (NCBI) | compare |
| b2905 | gcvT | +1.0 | 5.0 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1179 | ycgL | +1.0 | 1.7 | conserved protein (NCBI) | compare |
| b3465 | yhhF | +1.0 | 4.9 | predicted methyltransferase (NCBI) | compare |
| b0982 | yccY | +1.0 | 2.2 | putative phosphatase (VIMSS) | compare |
| b2480 | bcp | +1.0 | 2.3 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b2946 | yggJ | +1.0 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b2095 | gatZ | +1.0 | 3.6 | D-tagatose 1,6-bisphosphate aldolase 2, subunit (NCBI) | compare |
| b2057 | wcaC | +1.0 | 1.8 | predicted glycosyl transferase (NCBI) | compare |
| b1677 | lpp | +1.0 | 2.4 | murein lipoprotein (NCBI) | compare |
| b3849 | trkH | +1.0 | 6.6 | potassium transporter (NCBI) | compare |
| b2066 | udk | +1.0 | 3.4 | uridine/cytidine kinase (VIMSS) | compare |
| b0440 | hupB | +1.0 | 3.3 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1829 | htpX | +1.0 | 3.5 | heat shock protein HtpX (NCBI) | compare |
| b0537 | intD | +1.0 | 4.9 | DLP12 prophage; predicted integrase (NCBI) | compare |
| b4538 | yoeF | +1.0 | 0.5 | hypothetical protein (RefSeq) | compare |
| b2094 | gatA | +1.0 | 3.4 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b2911 | ssrS | +1.0 | 1.2 | 6S regulatory RNA (NCBI) | compare |
| b4484 | cpxP | +1.0 | 3.5 | periplasmic protein combats stress (NCBI) | compare |
| b1311 | ycjO | +0.9 | 3.7 | predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2426 | ucpA | +0.9 | 2.0 | putative oxidoreductase (VIMSS) | compare |
| b4646 | yrdE | +0.9 | 1.3 | no description | compare |
| b0435 | bolA | +0.9 | 3.0 | possible regulator of murein genes (VIMSS) | compare |
| b3057 | bacA | +0.9 | 3.7 | undecaprenyl pyrophosphate phosphatase (NCBI) | compare |
| b1427 | rimL | +0.9 | 2.2 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b4513 | kdpF | +0.9 | 2.5 | potassium ion accessory transporter subunit (NCBI) | compare |
| b3563 | yiaB | +0.9 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b0183 | rnhB | +0.9 | 1.5 | ribonuclease HII (NCBI) | compare |
| b0999 | cbpM | +0.9 | 2.0 | modulator of CbpA co-chaperone (NCBI) | compare |
| b0539 | ybcC | +0.9 | 3.0 | DLP12 prophage; predicted exonuclease (RefSeq) | compare |
| b1362 | rzpR | +0.9 | 1.6 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b2886 | ygfS | +0.9 | 2.3 | putative oxidoreductase, Fe-S subunit (VIMSS) | compare |
| b1446 | ydcY | +0.9 | 1.7 | hypothetical protein (NCBI) | compare |
| b1920 | fliY | +0.9 | 1.7 | cystine transporter subunit (NCBI) | compare |
| b1333 | uspE | +0.9 | 2.0 | stress-induced protein (NCBI) | compare |
| b3619 | rfaD | +0.9 | 3.4 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b2168 | fruK | +0.9 | 1.0 | 1-phosphofructokinase (NCBI) | compare |
| b3515 | gadW | +0.9 | 4.4 | DNA-binding transcriptional activator (NCBI) | compare |
| b4648 | ysaC | +0.9 | 1.8 | no description | compare |
| b2754 | ygbF | +0.9 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1830 | prc | +0.9 | 3.8 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0698 | kdpA | +0.9 | 3.4 | potassium-transporting ATPase subunit A (NCBI) | compare |
| b4207 | fklB | +0.9 | 2.8 | FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (VIMSS) | compare |
| b4177 | purA | +0.9 | 1.4 | adenylosuccinate synthetase (NCBI) | compare |
| b0880 | cspD | +0.9 | 1.1 | cold shock protein homolog (NCBI) | compare |