Experiment set9IT086 for Escherichia coli BW25113
LB Anaerobic with Trimethoprim 0.0000003125 mM
Group: stressMedia: LB + Trimethoprim (3.13E-04 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 3 genes in this experiment
For stress Trimethoprim in Escherichia coli BW25113
For stress Trimethoprim across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Galactose metabolism
- Inositol phosphate metabolism
- Nicotinate and nicotinamide metabolism
- Biosynthesis of ansamycins
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| GDP-D-glycero-α-D-manno-heptose biosynthesis | 4 | 1 | 1 |
| ADP-L-glycero-β-D-manno-heptose biosynthesis | 5 | 5 | 1 |
| NAD salvage pathway V (PNC V cycle) | 5 | 3 | 1 |
| NAD salvage pathway I (PNC VI cycle) | 7 | 5 | 1 |
| NAD salvage (plants) | 11 | 5 | 1 |
| superpathway of NAD biosynthesis in eukaryotes | 14 | 7 | 1 |