Experiment set9IT085 for Pseudomonas simiae WCS417

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Growth on radish seeds for 72 hours

200 most important genes:

  gene name fitness t score description  
PS417_18595 -4.1 -3.8 3-isopropylmalate dehydratase compare
PS417_14065 -4.1 -5.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27040 -3.7 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_22565 -3.4 -1.1 formyltetrahydrofolate deformylase compare
PS417_08125 -3.3 -1.1 prephenate dehydratase compare
PS417_27795 -3.1 -1.0 orotate phosphoribosyltransferase compare
PS417_11060 -3.1 -2.9 transporter compare
PS417_23545 -3.1 -2.9 gamma-glutamyl kinase compare
PS417_22840 -3.0 -1.4 tRNA-Met compare
PS417_24710 -3.0 -6.4 lipoprotein compare
PS417_24085 -3.0 -2.3 protein RnfH compare
PS417_01145 -3.0 -1.0 taurine transporter ATP-binding subunit compare
PS417_01560 -2.9 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_28040 -2.9 -3.9 histidine kinase compare
PS417_07620 -2.9 -1.3 beta-hexosaminidase compare
PS417_22520 -2.8 -1.8 histidine kinase compare
PS417_24745 -2.8 -1.8 gamma-glutamyl phosphate reductase compare
PS417_01565 -2.8 -3.2 imidazole glycerol phosphate synthase compare
PS417_05595 -2.7 -9.6 ornithine carbamoyltransferase compare
PS417_23810 -2.7 -9.8 acetolactate synthase 3 catalytic subunit compare
PS417_01915 -2.7 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00185 -2.7 -2.6 tryptophan synthase subunit beta compare
PS417_14515 -2.6 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_20025 -2.6 -1.2 alpha-ribazole phosphatase compare
PS417_00650 -2.5 -0.8 LysR family transcriptional regulator compare
PS417_02415 -2.5 -4.1 phosphoserine phosphatase compare
PS417_08730 -2.5 -1.9 cytochrome C compare
PS417_03145 -2.4 -2.2 acetyl-CoA acetyltransferase compare
PS417_02005 -2.4 -7.7 glutamate synthase compare
PS417_25725 -2.4 -10.9 anthranilate synthase component I compare
PS417_23995 -2.4 -0.8 preprotein translocase subunit SecG compare
PS417_00550 -2.4 -0.8 hypothetical protein compare
PS417_08135 -2.4 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21480 -2.4 -1.3 23S rRNA pseudouridylate synthase compare
PS417_07305 -2.4 -2.2 3-beta hydroxysteroid dehydrogenase compare
PS417_08150 -2.3 -2.4 hypothetical protein compare
PS417_25710 -2.3 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_01850 -2.3 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19425 -2.3 -0.7 allantoicase compare
PS417_24800 -2.3 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_13140 -2.3 -1.7 oxidoreductase compare
PS417_18560 -2.3 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_13710 -2.3 -2.3 hypothetical protein compare
PS417_09210 -2.3 -1.2 TetR family transcriptional regulator compare
PS417_28220 -2.2 -2.1 LysR family transcriptional regulator compare
PS417_04375 -2.2 -1.5 ABC transporter ATP-binding protein compare
PS417_03385 -2.2 -1.0 flavin reductase compare
PS417_03560 -2.2 -1.4 GTP-binding protein compare
PS417_01795 -2.2 -10.7 glucosyltransferase MdoH compare
PS417_02720 -2.2 -0.7 TetR family transcriptional regulator compare
PS417_15745 -2.2 -1.7 lipid carrier protein compare
PS417_16005 -2.2 -2.7 ATPase compare
PS417_08155 -2.2 -1.1 integration host factor subunit beta compare
PS417_00180 -2.2 -2.0 tryptophan synthase subunit alpha compare
PS417_03260 -2.1 -1.4 5S ribosomal RNA compare
PS417_18585 -2.1 -3.8 3-isopropylmalate dehydrogenase compare
PS417_07875 -2.1 -1.0 hypothetical protein compare
PS417_14940 -2.1 -1.5 LysR family transcriptional regulator compare
PS417_26120 -2.1 -1.6 hypothetical protein compare
PS417_23315 -2.1 -0.9 transcriptional regulator compare
PS417_14395 -2.1 -2.2 fe2+ zn2+ uptake regulation protein compare
PS417_17405 -2.1 -1.6 AraC family transcriptional regulator compare
PS417_26740 -2.1 -6.8 homoserine acetyltransferase compare
PS417_23800 -2.1 -7.7 ketol-acid reductoisomerase compare
PS417_06100 -2.0 -1.6 SAM-dependent methyltransferase compare
PS417_08245 -2.0 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18530 -2.0 -3.6 O-succinylhomoserine sulfhydrylase compare
PS417_01605 -2.0 -1.3 phosphoglycerate mutase compare
PS417_02000 -2.0 -7.7 glutamate synthase compare
PS417_22000 -2.0 -3.4 glutathione S-transferase compare
PS417_28035 -2.0 -5.1 transcriptional regulator PhoB compare
PS417_16490 -2.0 -1.7 cell division protein FtsK compare
PS417_13305 -2.0 -0.9 hypothetical protein compare
PS417_06075 -1.9 -1.2 hypothetical protein compare
PS417_01580 -1.9 -1.2 imidazole glycerol phosphate synthase compare
PS417_18090 -1.9 -3.4 iron ABC transporter compare
PS417_01645 -1.9 -2.1 cupin compare
PS417_04275 -1.9 -7.9 hypothetical protein compare
PS417_21430 -1.9 -1.7 3-oxoacyl-ACP synthase compare
PS417_21595 -1.9 -3.5 flagellar biosynthesis protein FlgN compare
PS417_21570 -1.9 -2.9 flagellar basal body rod protein FlgB compare
PS417_25270 -1.9 -2.4 NrdR family transcriptional regulator compare
PS417_06330 -1.9 -2.4 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_13195 -1.9 -2.0 RND transporter MFP subunit compare
PS417_01575 -1.9 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27870 -1.9 -2.1 ATP-dependent DNA helicase RecG compare
PS417_24500 -1.9 -3.0 DEAD/DEAH box helicase compare
PS417_08185 -1.8 -2.7 glycosyl transferase compare
PS417_01790 -1.8 -6.4 glucan biosynthesis protein G compare
PS417_02630 -1.8 -2.1 NAD synthetase compare
PS417_04650 -1.8 -0.8 D-alanine--D-alanine ligase compare
PS417_22445 -1.8 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_22330 -1.8 -2.7 arginine deiminase compare
PS417_26890 -1.8 -4.7 dihydroxy-acid dehydratase compare
PS417_21655 -1.8 -0.8 aspartate kinase compare
PS417_19415 -1.8 -1.7 allantoinase compare
PS417_17565 -1.8 -2.1 branched-chain amino acid aminotransferase compare
PS417_02980 -1.8 -0.8 chemotaxis protein compare
PS417_23375 -1.8 -1.4 cytochrome C oxidase compare
PS417_10100 -1.8 -3.2 hypothetical protein compare
PS417_01855 -1.8 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_23390 -1.8 -4.4 ubiquinol oxidase subunit II compare
PS417_16195 -1.8 -0.8 AraC family transcriptional regulator compare
PS417_07085 -1.8 -2.8 transcriptional regulator compare
PS417_02510 -1.7 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23805 -1.7 -3.0 acetolactate synthase 3 regulatory subunit compare
PS417_27300 -1.7 -0.8 cell division protein ZapA compare
PS417_25720 -1.7 -4.5 anthranilate synthase component II compare
PS417_16475 -1.7 -1.9 camphor resistance protein CrcB compare
PS417_19515 -1.7 -3.1 histidine kinase compare
PS417_18570 -1.7 -2.5 peptidoglycan-binding protein compare
PS417_14200 -1.7 -1.9 hypothetical protein compare
PS417_18600 -1.7 -2.3 isopropylmalate isomerase compare
PS417_01635 -1.7 -6.2 nitrogen regulation protein NR(I) compare
PS417_23910 -1.7 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_05445 -1.7 -1.1 DNA mismatch repair protein MutT compare
PS417_21070 -1.7 -1.8 aconitate hydratase compare
PS417_04410 -1.7 -1.6 hypothetical protein compare
PS417_15710 -1.7 -1.9 nitrate reductase compare
PS417_05100 -1.7 -1.8 RNA polymerase sigma factor compare
PS417_04585 -1.7 -1.3 hypothetical protein compare
PS417_27585 -1.7 -1.6 diaminopimelate epimerase compare
PS417_27100 -1.7 -3.6 phosphohydrolase compare
PS417_14855 -1.7 -3.0 gluconolactonase compare
PS417_00045 -1.7 -1.6 glycerol acyltransferase compare
PS417_27290 -1.7 -1.3 hypothetical protein compare
PS417_23110 -1.6 -5.8 2-isopropylmalate synthase compare
PS417_06245 -1.6 -1.9 zinc metallopeptidase RseP compare
PS417_08170 -1.6 -7.4 capsular biosynthesis protein compare
PS417_19955 -1.6 -1.2 hypothetical protein compare
PS417_17240 -1.6 -2.4 trigger factor compare
PS417_19755 -1.6 -1.0 flagellar motor switch protein FliM compare
PS417_23210 -1.6 -1.4 serine acetyltransferase compare
PS417_28230 -1.6 -1.5 transcriptional regulator compare
PS417_07640 -1.6 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17125 -1.6 -3.2 transcriptional regulator compare
PS417_18690 -1.6 -2.1 aromatic amino acid aminotransferase compare
PS417_27195 -1.6 -0.6 N-acetylglutamate synthase compare
PS417_21125 -1.6 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_19840 -1.6 -6.3 flagellar cap protein FliD compare
PS417_05815 -1.6 -2.8 recombinase RecA compare
PS417_28070 -1.6 -3.9 phosphate ABC transporter ATP-binding protein compare
PS417_25180 -1.6 -3.3 hypothetical protein compare
PS417_15885 -1.6 -1.1 GCN5 family acetyltransferase compare
PS417_01640 -1.5 -3.8 histidine kinase compare
PS417_01095 -1.5 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_17490 -1.5 -1.6 ABC transporter ATP-binding protein compare
PS417_07170 -1.5 -3.9 hypothetical protein compare
PS417_13205 -1.5 -1.3 isochorismate-pyruvate lyase compare
PS417_10015 -1.5 -0.8 hypothetical protein compare
PS417_21085 -1.5 -3.9 GntR family transcriptional regulator compare
PS417_16990 -1.5 -3.9 acyl-CoA dehydrogenase compare
PS417_06745 -1.5 -1.2 polysaccharide deacetylase compare
PS417_28200 -1.5 -3.3 hypothetical protein compare
PS417_21355 -1.5 -1.8 hypothetical protein compare
PS417_15820 -1.5 -2.9 universal stress protein UspA compare
PS417_11950 -1.5 -1.0 hypothetical protein compare
PS417_14980 -1.5 -0.8 universal stress protein UspA compare
PS417_18540 -1.5 -2.3 colicin V production CvpA compare
PS417_02280 -1.5 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_15325 -1.5 -0.9 type VI secretion protein compare
PS417_22640 -1.4 -2.9 cytochrome C biogenesis protein CcmE compare
PS417_04420 -1.4 -5.3 histidinol dehydrogenase compare
PS417_25225 -1.4 -1.6 MFS transporter compare
PS417_07710 -1.4 -4.5 membrane protein compare
PS417_01570 -1.4 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27750 -1.4 -3.9 transcriptional regulator compare
PS417_27800 -1.4 -3.8 exodeoxyribonuclease III compare
PS417_23715 -1.4 -2.2 cupin compare
PS417_02485 -1.4 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07000 -1.4 -3.1 hypothetical protein compare
PS417_26365 -1.4 -2.2 EmrB/QacA subfamily drug resistance transporter compare
PS417_20340 -1.4 -1.5 hypothetical protein compare
PS417_09440 -1.4 -1.0 MerR family transcriptional regulator compare
PS417_24775 -1.4 -2.1 dehydratase compare
PS417_23095 -1.4 -0.8 exodeoxyribonuclease compare
PS417_15365 -1.4 -1.8 diaminopimelate epimerase compare
PS417_07120 -1.4 -4.8 RNA polymerase sigma-H factor compare
PS417_12355 -1.4 -1.3 magnesium chelatase compare
PS417_04810 -1.4 -2.2 poly(beta-D-mannuronate) lyase compare
PS417_19805 -1.4 -2.0 flagellar M-ring protein FliF compare
PS417_01630 -1.4 -1.1 hypothetical protein compare
PS417_04390 -1.4 -2.1 toluene tolerance protein compare
PS417_08365 -1.4 -0.7 hypothetical protein compare
PS417_04965 -1.4 -1.8 hypothetical protein compare
PS417_12005 -1.4 -2.2 hypothetical protein compare
PS417_09930 -1.4 -1.1 hypothetical protein compare
PS417_05985 -1.4 -1.8 chemotaxis protein CheY compare
PS417_23380 -1.4 -1.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_23385 -1.4 -4.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_16080 -1.3 -1.6 AraC family transcriptional regulator compare
PS417_22450 -1.3 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_11375 -1.3 -1.9 hypothetical protein compare
PS417_01780 -1.3 -3.4 proline iminopeptidase compare
PS417_02110 -1.3 -1.0 acyl carrier protein compare
PS417_06680 -1.3 -5.1 nuclease PIN compare
PS417_00705 -1.3 -0.9 MarR family transcriptional regulator compare
PS417_22345 -1.3 -2.9 acetyl-CoA carboxylase compare
PS417_23915 -1.3 -2.5 pantoate--beta-alanine ligase compare
PS417_02950 -1.3 -2.0 tRNA-dihydrouridine synthase B compare


Specific Phenotypes

For 1 genes in this experiment